Wall clock time and date at job start Tue Mar 31 2020 21:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42901 * 114.00264 * 2 1 4 4 C 1.52999 * 109.47402 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47313 * 65.00059 * 4 3 2 6 6 C 1.36943 * 120.00100 * 274.46934 * 5 4 3 7 7 H 1.07998 * 120.00110 * 146.16429 * 6 5 4 8 8 C 1.38814 * 119.99487 * 326.16663 * 6 5 4 9 9 N 1.31619 * 120.00294 * 335.31379 * 8 6 5 10 10 Si 1.86808 * 119.99628 * 155.31637 * 8 6 5 11 11 H 1.48493 * 109.47203 * 89.99867 * 10 8 6 12 12 H 1.48502 * 109.46816 * 209.99931 * 10 8 6 13 13 H 1.48496 * 109.46938 * 329.99343 * 10 8 6 14 14 C 1.46501 * 120.00119 * 94.46259 * 5 4 3 15 15 C 1.52993 * 109.47380 * 270.00464 * 14 5 4 16 16 N 1.46498 * 109.47118 * 179.97438 * 15 14 5 17 17 C 1.34780 * 119.99873 * 179.97438 * 16 15 14 18 18 O 1.21278 * 120.00057 * 0.02562 * 17 16 15 19 19 C 1.50700 * 119.99877 * 180.02562 * 17 16 15 20 20 H 1.08996 * 109.69104 * 59.45705 * 19 17 16 21 21 C 1.53429 * 109.69471 * 180.02562 * 19 17 16 22 22 C 1.53108 * 109.55865 * 169.47585 * 21 19 17 23 23 C 1.53427 * 109.57947 * 289.95113 * 22 21 19 24 24 C 1.50589 * 108.37000 * 49.80163 * 23 22 21 25 25 N 1.32853 * 129.20828 * 163.38611 * 24 23 22 26 26 N 1.29025 * 108.65676 * 180.18136 * 25 24 23 27 27 N 1.29106 * 110.25347 * 0.02562 * 26 25 24 28 28 H 0.97003 * 126.00049 * 179.97438 * 27 26 25 29 29 C 1.34394 * 107.99212 * 359.93304 * 27 26 25 30 30 H 1.08994 * 109.47361 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.46995 * 299.99784 * 1 2 3 32 32 H 1.09000 * 109.47693 * 59.99684 * 1 2 3 33 33 H 1.09000 * 109.46599 * 60.00253 * 3 2 1 34 34 H 1.09004 * 109.47365 * 300.00358 * 3 2 1 35 35 H 1.09002 * 109.46721 * 305.00174 * 4 3 2 36 36 H 1.08998 * 109.47301 * 185.00510 * 4 3 2 37 37 H 0.96997 * 119.99681 * 180.02562 * 9 8 6 38 38 H 1.08995 * 109.46862 * 150.00200 * 14 5 4 39 39 H 1.09007 * 109.46652 * 30.00684 * 14 5 4 40 40 H 1.09002 * 109.47338 * 59.99642 * 15 14 5 41 41 H 1.08999 * 109.47164 * 299.99952 * 15 14 5 42 42 H 0.96995 * 120.00098 * 0.02562 * 16 15 14 43 43 H 1.09005 * 109.45715 * 49.44846 * 21 19 17 44 44 H 1.09001 * 109.44778 * 289.49561 * 21 19 17 45 45 H 1.08997 * 109.45386 * 169.91445 * 22 21 19 46 46 H 1.08998 * 109.45368 * 49.97986 * 22 21 19 47 47 H 1.08998 * 109.68946 * 169.53589 * 23 22 21 48 48 H 1.09002 * 109.68714 * 290.06944 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.0092 -0.7999 -1.3663 7 1 3.7901 -1.2683 -2.3144 8 6 4.3247 -1.5806 -0.2628 9 7 5.0419 -1.0746 0.7180 10 14 3.7313 -3.3495 -0.1698 11 1 4.7457 -4.2447 -0.7818 12 1 3.5288 -3.7295 1.2514 13 1 2.4477 -3.4802 -0.9048 14 6 4.3800 1.4037 -2.3834 15 6 3.1611 1.7025 -3.2583 16 7 3.5653 2.5423 -4.3886 17 6 2.6511 2.9335 -5.2984 18 8 1.4937 2.5906 -5.1811 19 6 3.0670 3.7968 -6.4614 20 1 3.8261 3.2806 -7.0491 21 6 1.8480 4.0999 -7.3425 22 6 2.2106 5.1799 -8.3653 23 6 2.3959 6.5243 -7.6496 24 6 3.3205 6.3156 -6.4794 25 7 3.9917 7.2150 -5.7685 26 7 4.6680 6.6002 -4.8578 27 7 4.4710 5.3268 -4.9380 28 1 4.8669 4.6514 -4.3653 29 6 3.6205 5.1015 -5.9539 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.6886 1.8463 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8514 0.5681 0.8409 36 1 3.9785 2.1764 0.0890 37 1 5.2626 -1.6203 1.4889 38 1 5.1316 0.8800 -2.9740 39 1 4.7978 2.3389 -2.0105 40 1 2.4094 2.2262 -2.6676 41 1 2.7433 0.7674 -3.6312 42 1 4.4910 2.8162 -4.4826 43 1 1.0272 4.4523 -6.7178 44 1 1.5433 3.1930 -7.8647 45 1 1.4105 5.2672 -9.1002 46 1 3.1376 4.9062 -8.8691 47 1 2.8315 7.2494 -8.3371 48 1 1.4313 6.8878 -7.2953 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725756094.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:39 Heat of formation + Delta-G solvation = 31.083328 kcal Electronic energy + Delta-G solvation = -30157.330473 eV Core-core repulsion = 26057.205885 eV Total energy + Delta-G solvation = -4100.124587 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.79168 -39.98674 -37.43253 -37.05198 -35.86212 -34.61777 -33.97314 -31.57278 -30.91425 -30.40144 -29.46591 -27.56879 -25.66402 -25.09586 -23.99559 -23.38488 -22.88810 -21.78473 -21.11409 -20.30786 -19.83964 -18.48380 -17.33615 -16.86884 -16.44470 -15.99738 -15.77048 -15.61575 -15.05664 -14.86721 -14.66899 -14.31857 -14.18803 -14.10931 -14.03595 -13.74723 -13.50129 -13.29037 -12.72859 -12.50747 -12.06906 -11.90932 -11.84596 -11.68845 -11.59766 -11.38208 -11.28377 -10.96814 -10.93835 -10.82267 -10.73187 -10.65824 -10.63904 -10.16923 -10.06940 -9.98649 -9.78151 -9.15228 -9.07184 -8.76485 -8.47146 -6.71440 -5.79567 -3.32973 1.20249 2.19709 2.29322 2.53336 3.03058 3.40622 3.48596 3.56243 3.91473 4.06395 4.30460 4.42423 4.53659 4.54583 4.69139 4.85732 4.90631 4.95004 5.07249 5.24292 5.28128 5.45071 5.52891 5.58323 5.61452 5.66395 5.69478 5.71312 5.77353 5.84476 5.92841 5.98884 5.99327 6.11520 6.17466 6.19537 6.37499 6.47616 6.50270 6.51976 6.58031 6.75093 7.33781 7.59905 7.80961 8.04395 8.06597 8.16665 8.47847 9.12702 9.79304 10.28882 11.22190 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017016 B = 0.002761 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.084586 B =10138.328447 C =10377.149327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.351 6.351 3 C 0.047 3.953 4 C 0.136 3.864 5 N -0.569 5.569 6 C -0.250 4.250 7 H 0.058 0.942 8 C 0.025 3.975 9 N -0.889 5.889 10 Si 0.899 3.101 11 H -0.291 1.291 12 H -0.290 1.290 13 H -0.277 1.277 14 C 0.136 3.864 15 C 0.092 3.908 16 N -0.728 5.728 17 C 0.511 3.489 18 O -0.522 6.522 19 C -0.033 4.033 20 H 0.119 0.881 21 C -0.098 4.098 22 C -0.119 4.119 23 C -0.036 4.036 24 C -0.005 4.005 25 N -0.258 5.258 26 N -0.079 5.079 27 N -0.378 5.378 28 H 0.446 0.554 29 C -0.011 4.011 30 H 0.074 0.926 31 H 0.026 0.974 32 H 0.029 0.971 33 H 0.024 0.976 34 H 0.027 0.973 35 H 0.109 0.891 36 H 0.040 0.960 37 H 0.254 0.746 38 H 0.056 0.944 39 H 0.037 0.963 40 H 0.061 0.939 41 H 0.071 0.929 42 H 0.386 0.614 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.082 0.918 46 H 0.070 0.930 47 H 0.087 0.913 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.728 11.792 -14.824 19.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.269 6.269 3 C -0.032 4.032 4 C 0.010 3.990 5 N -0.288 5.288 6 C -0.379 4.379 7 H 0.076 0.924 8 C -0.175 4.175 9 N -0.531 5.531 10 Si 0.729 3.271 11 H -0.218 1.218 12 H -0.216 1.216 13 H -0.202 1.202 14 C 0.008 3.992 15 C -0.033 4.033 16 N -0.380 5.380 17 C 0.295 3.705 18 O -0.397 6.397 19 C -0.057 4.057 20 H 0.137 0.863 21 C -0.136 4.136 22 C -0.157 4.157 23 C -0.075 4.075 24 C -0.145 4.145 25 N -0.124 5.124 26 N -0.058 5.058 27 N -0.098 5.098 28 H 0.293 0.707 29 C -0.147 4.147 30 H 0.093 0.907 31 H 0.044 0.956 32 H 0.048 0.952 33 H 0.042 0.958 34 H 0.046 0.954 35 H 0.126 0.874 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.055 0.945 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.219 0.781 43 H 0.101 0.899 44 H 0.104 0.896 45 H 0.101 0.899 46 H 0.088 0.912 47 H 0.105 0.895 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.676 12.521 -13.821 19.008 hybrid contribution -0.399 -1.851 0.137 1.899 sum -4.075 10.670 -13.685 17.825 Atomic orbital electron populations 1.22641 0.84284 1.01495 0.98438 1.88231 1.16493 1.27345 1.94794 1.23440 0.98589 0.84370 0.96849 1.21176 0.87951 0.96548 0.93339 1.43572 1.74012 1.02384 1.08838 1.18794 1.41438 0.80597 0.97051 0.92386 1.24885 0.96686 0.97770 0.98169 1.69961 1.36024 1.36838 1.10306 0.86380 0.79073 0.84747 0.76932 1.21845 1.21644 1.20239 1.21014 0.92659 0.94841 0.90699 1.22630 1.00952 0.93804 0.85899 1.46299 1.10887 1.53546 1.27313 1.20347 0.86214 0.80800 0.83177 1.90738 1.18145 1.55794 1.74996 1.20094 1.00358 0.89406 0.95812 0.86332 1.21475 0.95457 1.00058 0.96637 1.21681 1.02732 0.93545 0.97767 1.20029 0.97027 0.98445 0.91987 1.21720 1.02886 0.88343 1.01587 1.74833 1.07642 1.26928 1.03016 1.78624 1.20588 0.87651 1.18933 1.44863 1.31939 1.09040 1.24007 0.70700 1.21499 0.99813 0.98586 0.94793 0.90733 0.95569 0.95221 0.95802 0.95448 0.87369 0.94135 0.93632 0.92533 0.94497 0.92072 0.91054 0.78092 0.89912 0.89632 0.89920 0.91159 0.89481 0.89593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.35 -7.83 9.96 -35.23 -0.35 -8.18 16 3 C 0.05 0.94 6.28 37.16 0.23 1.18 16 4 C 0.14 3.03 5.83 -4.04 -0.02 3.00 16 5 N -0.57 -13.03 2.45 -173.24 -0.43 -13.45 16 6 C -0.25 -6.52 8.75 -15.06 -0.13 -6.66 16 7 H 0.06 1.54 7.94 -52.49 -0.42 1.12 16 8 C 0.02 0.67 4.95 -17.43 -0.09 0.59 16 9 N -0.89 -24.84 11.36 55.49 0.63 -24.21 16 10 Si 0.90 21.92 29.62 -169.99 -5.04 16.89 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 13 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 14 C 0.14 2.44 5.82 -4.05 -0.02 2.42 16 15 C 0.09 1.52 6.00 -4.05 -0.02 1.49 16 16 N -0.73 -8.87 5.12 -60.30 -0.31 -9.18 16 17 C 0.51 6.53 7.14 -10.98 -0.08 6.45 16 18 O -0.52 -8.83 15.83 5.56 0.09 -8.74 16 19 C -0.03 -0.30 2.90 -92.78 -0.27 -0.57 16 20 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 21 C -0.10 -0.80 4.67 -26.45 -0.12 -0.92 16 22 C -0.12 -0.70 5.90 -26.45 -0.16 -0.86 16 23 C -0.04 -0.27 6.30 -27.72 -0.17 -0.44 16 24 C -0.01 -0.06 7.11 -83.13 -0.59 -0.65 16 25 N -0.26 -3.46 12.39 33.16 0.41 -3.05 16 26 N -0.08 -1.03 13.40 60.35 0.81 -0.22 16 27 N -0.38 -3.91 6.77 33.40 0.23 -3.69 16 28 H 0.45 3.58 6.90 -190.07 -1.31 2.27 16 29 C -0.01 -0.11 6.39 -82.48 -0.53 -0.64 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.03 0.40 8.14 -51.92 -0.42 -0.02 16 32 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.03 0.54 6.46 -51.93 -0.34 0.20 16 35 H 0.11 2.80 5.37 -51.93 -0.28 2.53 16 36 H 0.04 0.81 7.84 -51.93 -0.41 0.40 16 37 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 38 H 0.06 1.01 8.04 -51.93 -0.42 0.59 16 39 H 0.04 0.59 7.86 -51.92 -0.41 0.18 16 40 H 0.06 1.11 6.47 -51.93 -0.34 0.77 16 41 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 42 H 0.39 3.46 6.64 -40.82 -0.27 3.19 16 43 H 0.08 0.82 7.74 -51.93 -0.40 0.42 16 44 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.07 0.37 8.12 -51.93 -0.42 -0.06 16 47 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 48 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 386.37 15.07 5.82 5.82 Total: -1.00 -33.58 386.37 -7.36 -40.94 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -8.37 Total: 1.05 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: -0.86 Total: 6.02 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: 1.34 Total: -53.80 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: -0.26 Total: -16.93 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.04 Total: 16.89 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.58 -7.36 -40.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725756094.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.027 kcal (2) G-P(sol) polarization free energy of solvation -33.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds