Wall clock time and date at job start Tue Mar 31 2020 21:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42901 * 114.00264 * 2 1 4 4 C 1.52999 * 109.47402 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47313 * 65.00059 * 4 3 2 6 6 C 1.36943 * 120.00100 * 274.46934 * 5 4 3 7 7 H 1.07998 * 120.00110 * 146.16429 * 6 5 4 8 8 C 1.38814 * 119.99487 * 326.16663 * 6 5 4 9 9 N 1.31619 * 120.00294 * 335.31379 * 8 6 5 10 10 Si 1.86808 * 119.99628 * 155.31637 * 8 6 5 11 11 H 1.48493 * 109.47203 * 89.99867 * 10 8 6 12 12 H 1.48502 * 109.46816 * 209.99931 * 10 8 6 13 13 H 1.48496 * 109.46938 * 329.99343 * 10 8 6 14 14 C 1.46501 * 120.00119 * 94.46259 * 5 4 3 15 15 C 1.52993 * 109.47380 * 270.00464 * 14 5 4 16 16 N 1.46498 * 109.47118 * 179.97438 * 15 14 5 17 17 C 1.34780 * 119.99873 * 179.97438 * 16 15 14 18 18 O 1.21278 * 120.00057 * 0.02562 * 17 16 15 19 19 C 1.50700 * 119.99877 * 180.02562 * 17 16 15 20 20 H 1.08996 * 109.69104 * 59.45705 * 19 17 16 21 21 C 1.53429 * 109.69471 * 180.02562 * 19 17 16 22 22 C 1.53108 * 109.55865 * 169.47585 * 21 19 17 23 23 C 1.53427 * 109.57947 * 289.95113 * 22 21 19 24 24 C 1.50589 * 108.37000 * 49.80163 * 23 22 21 25 25 N 1.32853 * 129.20828 * 163.38611 * 24 23 22 26 26 N 1.29025 * 108.65676 * 180.18136 * 25 24 23 27 27 N 1.29106 * 110.25347 * 0.02562 * 26 25 24 28 28 H 0.97003 * 126.00049 * 179.97438 * 27 26 25 29 29 C 1.34394 * 107.99212 * 359.93304 * 27 26 25 30 30 H 1.08994 * 109.47361 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.46995 * 299.99784 * 1 2 3 32 32 H 1.09000 * 109.47693 * 59.99684 * 1 2 3 33 33 H 1.09000 * 109.46599 * 60.00253 * 3 2 1 34 34 H 1.09004 * 109.47365 * 300.00358 * 3 2 1 35 35 H 1.09002 * 109.46721 * 305.00174 * 4 3 2 36 36 H 1.08998 * 109.47301 * 185.00510 * 4 3 2 37 37 H 0.96997 * 119.99681 * 180.02562 * 9 8 6 38 38 H 1.08995 * 109.46862 * 150.00200 * 14 5 4 39 39 H 1.09007 * 109.46652 * 30.00684 * 14 5 4 40 40 H 1.09002 * 109.47338 * 59.99642 * 15 14 5 41 41 H 1.08999 * 109.47164 * 299.99952 * 15 14 5 42 42 H 0.96995 * 120.00098 * 0.02562 * 16 15 14 43 43 H 1.09005 * 109.45715 * 49.44846 * 21 19 17 44 44 H 1.09001 * 109.44778 * 289.49561 * 21 19 17 45 45 H 1.08997 * 109.45386 * 169.91445 * 22 21 19 46 46 H 1.08998 * 109.45368 * 49.97986 * 22 21 19 47 47 H 1.08998 * 109.68946 * 169.53589 * 23 22 21 48 48 H 1.09002 * 109.68714 * 290.06944 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.0092 -0.7999 -1.3663 7 1 3.7901 -1.2683 -2.3144 8 6 4.3247 -1.5806 -0.2628 9 7 5.0419 -1.0746 0.7180 10 14 3.7313 -3.3495 -0.1698 11 1 4.7457 -4.2447 -0.7818 12 1 3.5288 -3.7295 1.2514 13 1 2.4477 -3.4802 -0.9048 14 6 4.3800 1.4037 -2.3834 15 6 3.1611 1.7025 -3.2583 16 7 3.5653 2.5423 -4.3886 17 6 2.6511 2.9335 -5.2984 18 8 1.4937 2.5906 -5.1811 19 6 3.0670 3.7968 -6.4614 20 1 3.8261 3.2806 -7.0491 21 6 1.8480 4.0999 -7.3425 22 6 2.2106 5.1799 -8.3653 23 6 2.3959 6.5243 -7.6496 24 6 3.3205 6.3156 -6.4794 25 7 3.9917 7.2150 -5.7685 26 7 4.6680 6.6002 -4.8578 27 7 4.4710 5.3268 -4.9380 28 1 4.8669 4.6514 -4.3653 29 6 3.6205 5.1015 -5.9539 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.6886 1.8463 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8514 0.5681 0.8409 36 1 3.9785 2.1764 0.0890 37 1 5.2626 -1.6203 1.4889 38 1 5.1316 0.8800 -2.9740 39 1 4.7978 2.3389 -2.0105 40 1 2.4094 2.2262 -2.6676 41 1 2.7433 0.7674 -3.6312 42 1 4.4910 2.8162 -4.4826 43 1 1.0272 4.4523 -6.7178 44 1 1.5433 3.1930 -7.8647 45 1 1.4105 5.2672 -9.1002 46 1 3.1376 4.9062 -8.8691 47 1 2.8315 7.2494 -8.3371 48 1 1.4313 6.8878 -7.2953 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725756094.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:38 Heat of formation + Delta-G solvation = 6.536513 kcal Electronic energy + Delta-G solvation = -30158.394902 eV Core-core repulsion = 26057.205885 eV Total energy + Delta-G solvation = -4101.189017 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -44.63660 -41.05489 -38.99059 -37.91484 -37.34217 -35.92020 -34.96919 -33.36282 -31.83313 -31.16978 -30.91210 -29.12626 -27.19370 -26.20302 -25.35693 -24.35366 -23.72444 -23.14319 -22.34310 -21.81216 -20.54829 -19.39776 -18.70738 -18.22587 -17.56850 -17.30711 -16.97972 -16.77755 -16.57514 -16.43556 -15.89337 -15.65724 -15.34544 -15.19392 -14.97766 -14.85522 -14.76346 -14.52797 -14.11270 -13.64108 -13.45663 -13.18867 -13.06224 -12.71132 -12.70105 -12.50873 -12.44680 -12.42754 -12.34413 -12.24623 -12.01957 -11.95645 -11.78125 -11.66359 -11.57008 -11.38567 -11.09956 -10.47796 -10.41557 -10.18194 -9.98065 -8.61794 -7.78987 -5.33944 0.36288 1.29246 1.43097 1.44473 1.50127 1.59478 1.63953 1.99249 2.57805 3.16117 3.17465 3.27856 3.34852 3.52532 3.68204 3.77955 3.90582 4.14769 4.15878 4.24139 4.28241 4.32671 4.37861 4.45550 4.47751 4.52737 4.58640 4.66135 4.67882 4.77876 4.84991 4.91361 4.97665 4.99251 5.05127 5.10467 5.12310 5.19494 5.32619 5.35620 5.46236 5.70722 5.72346 5.80426 6.32039 6.42268 6.62777 7.02670 7.20347 7.29562 7.89738 8.35565 9.18288 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017016 B = 0.002761 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.084586 B =10138.328447 C =10377.149327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.391 6.391 3 C 0.053 3.947 4 C 0.134 3.866 5 N -0.585 5.585 6 C -0.244 4.244 7 H 0.048 0.952 8 C -0.017 4.017 9 N -0.913 5.913 10 Si 0.942 3.058 11 H -0.286 1.286 12 H -0.296 1.296 13 H -0.281 1.281 14 C 0.138 3.862 15 C 0.116 3.884 16 N -0.717 5.717 17 C 0.510 3.490 18 O -0.565 6.565 19 C -0.020 4.020 20 H 0.155 0.845 21 C -0.099 4.099 22 C -0.108 4.108 23 C -0.038 4.038 24 C -0.011 4.011 25 N -0.288 5.288 26 N -0.107 5.107 27 N -0.369 5.369 28 H 0.454 0.546 29 C -0.009 4.009 30 H 0.081 0.919 31 H 0.048 0.952 32 H 0.036 0.964 33 H 0.044 0.956 34 H 0.033 0.967 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.248 0.752 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.046 0.954 41 H 0.041 0.959 42 H 0.405 0.595 43 H 0.061 0.939 44 H 0.093 0.907 45 H 0.105 0.895 46 H 0.085 0.915 47 H 0.100 0.900 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.979 12.614 -16.844 21.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.310 6.310 3 C -0.025 4.025 4 C 0.008 3.992 5 N -0.305 5.305 6 C -0.374 4.374 7 H 0.066 0.934 8 C -0.214 4.214 9 N -0.558 5.558 10 Si 0.772 3.228 11 H -0.213 1.213 12 H -0.223 1.223 13 H -0.207 1.207 14 C 0.011 3.989 15 C -0.010 4.010 16 N -0.370 5.370 17 C 0.296 3.704 18 O -0.442 6.442 19 C -0.044 4.044 20 H 0.172 0.828 21 C -0.137 4.137 22 C -0.146 4.146 23 C -0.077 4.077 24 C -0.152 4.152 25 N -0.153 5.153 26 N -0.085 5.085 27 N -0.091 5.091 28 H 0.303 0.697 29 C -0.145 4.145 30 H 0.100 0.900 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.051 0.949 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.058 0.942 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.241 0.759 43 H 0.079 0.921 44 H 0.112 0.888 45 H 0.123 0.877 46 H 0.103 0.897 47 H 0.118 0.882 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.895 13.377 -15.862 21.112 hybrid contribution -0.384 -2.061 0.719 2.216 sum -4.278 11.316 -15.143 19.382 Atomic orbital electron populations 1.22799 0.82001 1.02503 0.99795 1.88156 1.19161 1.28571 1.95110 1.23315 0.97184 0.84034 0.98002 1.21108 0.89497 0.96635 0.91964 1.43704 1.74583 1.01958 1.10245 1.18872 1.39724 0.82415 0.96416 0.93433 1.25339 0.97557 1.00112 0.98434 1.70057 1.37543 1.37496 1.10675 0.85697 0.78469 0.82400 0.76266 1.21282 1.22278 1.20696 1.21096 0.93126 0.95199 0.89466 1.22000 0.99564 0.92889 0.86566 1.46060 1.12058 1.52721 1.26180 1.21014 0.85429 0.80351 0.83579 1.90728 1.20039 1.57465 1.76003 1.20172 1.01708 0.88161 0.94318 0.82818 1.21521 0.94245 1.01227 0.96725 1.21662 1.04287 0.91484 0.97176 1.20223 0.96396 0.99897 0.91218 1.22324 1.02654 0.88061 1.02121 1.74806 1.08655 1.28063 1.03807 1.78576 1.21663 0.88627 1.19646 1.44870 1.31586 1.08656 1.23974 0.69724 1.21687 0.99432 0.98881 0.94535 0.90024 0.93380 0.94544 0.93760 0.94897 0.90876 0.92101 0.94222 0.92336 0.91847 0.93565 0.94094 0.75887 0.92064 0.88827 0.87698 0.89673 0.88188 0.89412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.87 11.01 113.37 1.25 2.12 16 2 O -0.39 -17.33 9.96 -148.98 -1.48 -18.82 16 3 C 0.05 2.12 6.28 71.98 0.45 2.57 16 4 C 0.13 5.92 5.83 86.38 0.50 6.42 16 5 N -0.58 -26.62 2.45 -702.01 -1.72 -28.34 16 6 C -0.24 -12.83 8.75 84.03 0.73 -12.09 16 7 H 0.05 2.55 7.94 -2.91 -0.02 2.53 16 8 C -0.02 -0.93 4.95 84.86 0.42 -0.51 16 9 N -0.91 -51.81 11.36 21.65 0.25 -51.56 16 10 Si 0.94 45.52 29.62 68.60 2.03 47.55 16 11 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 12 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 13 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 14 C 0.14 4.78 5.82 86.38 0.50 5.28 16 15 C 0.12 3.73 6.00 86.38 0.52 4.25 16 16 N -0.72 -16.22 5.12 -463.07 -2.37 -18.59 16 17 C 0.51 12.21 7.14 87.66 0.63 12.83 16 18 O -0.56 -18.74 15.83 -3.02 -0.05 -18.79 16 19 C -0.02 -0.31 2.90 -12.19 -0.04 -0.34 16 20 H 0.15 1.34 8.14 -2.39 -0.02 1.32 16 21 C -0.10 -1.35 4.67 30.77 0.14 -1.21 16 22 C -0.11 -0.89 5.90 30.77 0.18 -0.71 16 23 C -0.04 -0.48 6.30 29.96 0.19 -0.29 16 24 C -0.01 -0.21 7.11 41.77 0.30 0.08 16 25 N -0.29 -7.44 12.39 -48.99 -0.61 -8.04 16 26 N -0.11 -2.68 13.40 37.02 0.50 -2.19 16 27 N -0.37 -7.01 6.77 -48.24 -0.33 -7.34 16 28 H 0.45 6.39 6.90 -219.68 -1.52 4.87 16 29 C -0.01 -0.16 6.39 41.52 0.27 0.11 16 30 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 31 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 32 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.03 1.26 6.46 -2.38 -0.02 1.24 16 35 H 0.07 3.84 5.37 -2.39 -0.01 3.83 16 36 H 0.06 2.36 7.84 -2.39 -0.02 2.34 16 37 H 0.25 13.83 8.31 -92.71 -0.77 13.06 16 38 H 0.06 2.01 8.04 -2.39 -0.02 1.99 16 39 H 0.06 1.88 7.86 -2.38 -0.02 1.86 16 40 H 0.05 1.64 6.47 -2.39 -0.02 1.63 16 41 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.40 6.23 6.64 -92.71 -0.62 5.61 16 43 H 0.06 1.13 7.74 -2.38 -0.02 1.11 16 44 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 46 H 0.08 0.51 8.12 -2.39 -0.02 0.49 16 47 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 48 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -74.45 386.37 1.12 -73.33 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -1.14 Total: 14.29 kcal Atomic # 6 Polarization: 12.45 SS G_CDS: 6.05 Total: 18.50 kcal Atomic # 7 Polarization: -111.78 SS G_CDS: -4.28 Total: -116.07 kcal Atomic # 8 Polarization: -36.08 SS G_CDS: -1.53 Total: -37.61 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -74.45 1.12 -73.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725756094.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.866 kcal (2) G-P(sol) polarization free energy of solvation -74.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds