Wall clock time and date at job start Tue Mar 31 2020 21:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46504 * 120.00367 * 2 1 4 4 C 1.52994 * 109.47305 * 276.44089 * 3 2 1 5 5 O 1.42901 * 109.47188 * 66.30805 * 4 3 2 6 6 C 1.42907 * 113.99927 * 180.02562 * 5 4 3 7 7 C 1.52991 * 109.46933 * 180.02562 * 6 5 4 8 8 N 1.46498 * 109.47578 * 65.00173 * 7 6 5 9 9 C 1.36936 * 120.00747 * 179.97438 * 8 7 6 10 10 H 1.08005 * 119.99507 * 359.97438 * 9 8 7 11 11 C 1.38802 * 120.00537 * 179.97438 * 9 8 7 12 12 N 1.31625 * 119.99885 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00241 * 179.72556 * 11 9 8 14 14 H 1.48495 * 109.47636 * 89.99577 * 13 11 9 15 15 H 1.48503 * 109.47294 * 210.00267 * 13 11 9 16 16 H 1.48504 * 109.47012 * 329.99375 * 13 11 9 17 17 C 1.34780 * 119.99809 * 180.02562 * 2 1 3 18 18 O 1.21277 * 120.00029 * 6.03013 * 17 2 1 19 19 C 1.50706 * 119.99801 * 186.02678 * 17 2 1 20 20 H 1.09001 * 109.44907 * 47.19290 * 19 17 2 21 21 C 1.53144 * 109.45029 * 167.14198 * 19 17 2 22 22 C 1.53464 * 109.30562 * 189.46187 * 21 19 17 23 23 C 1.50795 * 108.13520 * 311.29781 * 22 21 19 24 24 N 1.29831 * 128.52242 * 195.89459 * 23 22 21 25 25 N 1.28907 * 109.48281 * 179.90061 * 24 23 22 26 26 C 1.30837 * 109.73659 * 0.02562 * 25 24 23 27 27 N 1.34685 * 107.07384 * 0.04083 * 26 25 24 28 28 C 1.46245 * 128.85804 * 179.88356 * 27 26 25 29 29 H 1.09000 * 109.46861 * 85.47347 * 1 2 3 30 30 H 1.08993 * 109.47164 * 205.47482 * 1 2 3 31 31 H 1.09002 * 109.46508 * 325.47455 * 1 2 3 32 32 H 1.08994 * 109.47116 * 156.43357 * 3 2 1 33 33 H 1.09000 * 109.46705 * 36.43923 * 3 2 1 34 34 H 1.09007 * 109.46709 * 306.31080 * 4 3 2 35 35 H 1.08993 * 109.47315 * 186.31323 * 4 3 2 36 36 H 1.08998 * 109.46974 * 59.99912 * 6 5 4 37 37 H 1.08999 * 109.46744 * 299.99999 * 6 5 4 38 38 H 1.08999 * 109.47586 * 304.99495 * 7 6 5 39 39 H 1.09011 * 109.46988 * 184.99782 * 7 6 5 40 40 H 0.97005 * 119.99929 * 359.97438 * 8 7 6 41 41 H 0.97005 * 119.99801 * 179.97438 * 12 11 9 42 42 H 1.09002 * 109.49782 * 309.41480 * 21 19 17 43 43 H 1.09002 * 109.49198 * 69.48080 * 21 19 17 44 44 H 1.09007 * 109.72195 * 70.95529 * 22 21 19 45 45 H 1.09001 * 109.72609 * 191.58333 * 22 21 19 46 46 H 1.08008 * 126.46015 * 180.02562 * 26 25 24 47 47 H 1.08996 * 109.61535 * 77.34889 * 28 27 26 48 48 H 1.09003 * 109.57307 * 316.89407 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3125 1.7913 -1.4333 5 8 1.0139 2.1352 -1.9205 6 6 1.0091 2.6364 -3.2588 7 6 -0.4252 2.9706 -3.6730 8 7 -0.9291 4.0697 -2.8458 9 6 -2.1994 4.5439 -3.0368 10 1 -2.8298 4.1079 -3.7977 11 6 -2.6769 5.5849 -2.2526 12 7 -1.9088 6.1160 -1.3250 13 14 -4.4071 6.2369 -2.5184 14 1 -5.3570 5.4846 -1.6600 15 1 -4.4532 7.6780 -2.1627 16 1 -4.7867 6.0666 -3.9439 17 6 2.1389 -1.1673 -0.0005 18 8 1.5375 -2.2146 -0.1113 19 6 3.6397 -1.1709 0.1365 20 1 3.9309 -0.5143 0.9563 21 6 4.1217 -2.5950 0.4279 22 6 5.6102 -2.5607 0.7999 23 6 6.3333 -1.7345 -0.2337 24 7 7.6081 -1.6724 -0.4719 25 7 7.8251 -0.8486 -1.4393 26 6 6.6902 -0.3498 -1.8579 27 7 5.7164 -0.8965 -1.1050 28 6 4.2728 -0.6710 -1.1672 29 1 -0.3633 0.0811 -1.0245 30 1 -0.3633 -0.9277 0.4420 31 1 -0.3632 0.8467 0.5825 32 1 3.1950 1.1123 0.4108 33 1 1.6633 1.9967 0.6104 34 1 2.7459 1.0184 -2.0682 35 1 2.9517 2.6741 -1.4481 36 1 1.4152 1.8808 -3.9312 37 1 1.6213 3.5367 -3.3117 38 1 -1.0570 2.0931 -3.5354 39 1 -0.4406 3.2685 -4.7215 40 1 -0.3627 4.4616 -2.1626 41 1 -2.2424 6.8437 -0.7772 42 1 3.5489 -3.0105 1.2570 43 1 3.9816 -3.2148 -0.4578 44 1 5.7331 -2.1087 1.7842 45 1 6.0108 -3.5744 0.8079 46 1 6.5591 0.3656 -2.6564 47 1 3.8529 -1.2190 -2.0107 48 1 4.0743 0.3942 -1.2851 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725802975.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:02 Heat of formation + Delta-G solvation = 22.428974 kcal Electronic energy + Delta-G solvation = -29875.029986 eV Core-core repulsion = 25774.530118 eV Total energy + Delta-G solvation = -4100.499868 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.67865 -40.72515 -38.13531 -37.26024 -36.00753 -34.44487 -34.05793 -31.83794 -31.56049 -30.12948 -29.52778 -27.76083 -27.11102 -25.19937 -23.79623 -23.60892 -23.13477 -22.63559 -21.28069 -20.55985 -19.17479 -17.94964 -17.87744 -17.23856 -16.67629 -16.55483 -16.20021 -16.19301 -15.65764 -15.26929 -14.83044 -14.76667 -14.65177 -14.52099 -14.11820 -13.80020 -13.33174 -13.12381 -13.06520 -12.89390 -12.64473 -12.45664 -12.29435 -12.16675 -11.97236 -11.81634 -11.73530 -11.56658 -11.49222 -11.02380 -10.85534 -10.70512 -10.64310 -10.53602 -10.19314 -10.08638 -9.78921 -9.52760 -9.47866 -8.96171 -8.90370 -6.95584 -5.79903 -3.08217 1.45345 1.88162 2.23265 2.54645 2.63584 3.40609 3.45998 3.47314 3.60495 3.65878 3.76489 3.85215 3.91633 4.25785 4.37095 4.46022 4.48166 4.56117 4.64885 4.73617 4.81553 4.86381 4.96390 5.02653 5.17179 5.23938 5.32446 5.39402 5.42603 5.45570 5.51394 5.53516 5.55984 5.57731 5.66428 5.78871 5.79310 6.00777 6.17741 6.24521 6.43416 6.48791 6.63857 7.02198 7.34352 7.65817 7.75400 8.38523 8.38776 9.50633 10.07675 10.43466 11.42866 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019623 B = 0.002356 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.560130 B =11882.944426 C =12711.020344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.600 5.600 3 C 0.101 3.899 4 C 0.035 3.965 5 O -0.363 6.363 6 C 0.058 3.942 7 C 0.154 3.846 8 N -0.727 5.727 9 C -0.239 4.239 10 H 0.069 0.931 11 C -0.014 4.014 12 N -0.933 5.933 13 Si 0.907 3.093 14 H -0.290 1.290 15 H -0.291 1.291 16 H -0.282 1.282 17 C 0.519 3.481 18 O -0.528 6.528 19 C -0.125 4.125 20 H 0.110 0.890 21 C -0.106 4.106 22 C -0.034 4.034 23 C 0.177 3.823 24 N -0.292 5.292 25 N -0.300 5.300 26 C 0.157 3.843 27 N -0.472 5.472 28 C 0.104 3.896 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.045 0.955 35 H 0.062 0.938 36 H 0.043 0.957 37 H 0.050 0.950 38 H 0.026 0.974 39 H 0.033 0.967 40 H 0.386 0.614 41 H 0.254 0.746 42 H 0.096 0.904 43 H 0.081 0.919 44 H 0.098 0.902 45 H 0.106 0.894 46 H 0.220 0.780 47 H 0.099 0.901 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.972 -15.196 3.892 21.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.332 5.332 3 C -0.023 4.023 4 C -0.043 4.043 5 O -0.282 6.282 6 C -0.019 4.019 7 C 0.027 3.973 8 N -0.372 5.372 9 C -0.370 4.370 10 H 0.087 0.913 11 C -0.209 4.209 12 N -0.581 5.581 13 Si 0.738 3.262 14 H -0.217 1.217 15 H -0.218 1.218 16 H -0.208 1.208 17 C 0.305 3.695 18 O -0.405 6.405 19 C -0.146 4.146 20 H 0.128 0.872 21 C -0.145 4.145 22 C -0.074 4.074 23 C -0.091 4.091 24 N -0.131 5.131 25 N -0.139 5.139 26 C -0.131 4.131 27 N -0.163 5.163 28 C -0.019 4.019 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.109 0.891 33 H 0.118 0.882 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.044 0.956 39 H 0.050 0.950 40 H 0.220 0.780 41 H 0.064 0.936 42 H 0.114 0.886 43 H 0.100 0.900 44 H 0.116 0.884 45 H 0.124 0.876 46 H 0.237 0.763 47 H 0.117 0.883 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 15.776 -15.979 3.948 22.799 hybrid contribution -1.939 1.220 -0.391 2.324 sum 13.837 -14.759 3.558 20.541 Atomic orbital electron populations 1.21725 0.77258 1.02721 1.03400 1.47799 1.08127 1.05223 1.72066 1.21877 0.97745 0.85927 0.96714 1.23108 0.87758 0.98691 0.94779 1.88086 1.25660 1.84175 1.30247 1.22830 0.99759 0.96751 0.82548 1.20683 0.90146 0.92133 0.94374 1.42266 1.14841 1.38254 1.41797 1.19225 0.90481 1.12602 1.14741 0.91263 1.24725 0.98313 0.99257 0.98648 1.69668 1.35984 1.28235 1.24256 0.86198 0.84436 0.78039 0.77556 1.21711 1.21778 1.20791 1.20043 0.88489 0.83809 0.77179 1.90736 1.69686 1.31130 1.48904 1.21701 0.93530 1.00911 0.98486 0.87202 1.21567 0.94219 0.94053 1.04613 1.20287 0.92772 0.99543 0.94786 1.24873 0.90438 0.96944 0.96827 1.74086 1.11879 1.15597 1.11555 1.74514 1.22069 1.09054 1.08259 1.26334 0.83926 1.02598 1.00230 1.46149 1.08846 1.33639 1.27686 1.22330 0.76305 1.04113 0.99167 0.91354 0.90990 0.90591 0.89064 0.88161 0.93757 0.92032 0.93908 0.93200 0.95600 0.94986 0.77977 0.93573 0.88575 0.89993 0.88390 0.87566 0.76327 0.88314 0.87197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.06 9.85 59.85 0.59 1.65 16 2 N -0.60 -5.91 2.87 -181.57 -0.52 -6.43 16 3 C 0.10 0.81 5.36 -4.04 -0.02 0.79 16 4 C 0.03 0.32 5.32 37.15 0.20 0.52 16 5 O -0.36 -5.22 9.35 -35.23 -0.33 -5.55 16 6 C 0.06 0.84 6.07 37.15 0.23 1.07 16 7 C 0.15 2.95 6.64 -4.05 -0.03 2.93 16 8 N -0.73 -17.90 5.55 -59.91 -0.33 -18.23 16 9 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 10 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 11 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 12 N -0.93 -27.63 13.06 55.49 0.72 -26.91 16 13 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 14 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 15 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 C 0.52 5.05 6.90 -10.98 -0.08 4.97 16 18 O -0.53 -7.02 15.60 5.56 0.09 -6.94 16 19 C -0.12 -0.80 1.69 -91.54 -0.15 -0.96 16 20 H 0.11 0.55 6.95 -51.93 -0.36 0.18 16 21 C -0.11 -0.66 4.60 -26.42 -0.12 -0.79 16 22 C -0.03 -0.20 6.33 -27.60 -0.17 -0.38 16 23 C 0.18 1.64 7.75 -155.31 -1.20 0.44 16 24 N -0.29 -3.65 12.21 32.76 0.40 -3.25 16 25 N -0.30 -3.70 12.23 29.58 0.36 -3.34 16 26 C 0.16 1.33 12.83 -90.42 -1.16 0.17 16 27 N -0.47 -3.69 3.11 -115.54 -0.36 -4.05 16 28 C 0.10 0.63 5.39 -4.02 -0.02 0.60 16 29 H 0.07 0.92 7.87 -51.93 -0.41 0.51 16 30 H 0.07 0.84 7.38 -51.93 -0.38 0.46 16 31 H 0.08 0.89 8.01 -51.93 -0.42 0.47 16 32 H 0.09 0.46 5.34 -51.93 -0.28 0.18 16 33 H 0.10 0.90 8.02 -51.93 -0.42 0.49 16 34 H 0.04 0.34 5.94 -51.92 -0.31 0.03 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.03 0.60 8.14 -51.92 -0.42 0.18 16 40 H 0.39 10.04 7.67 -40.82 -0.31 9.72 16 41 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 42 H 0.10 0.58 8.00 -51.93 -0.42 0.17 16 43 H 0.08 0.60 8.12 -51.93 -0.42 0.18 16 44 H 0.10 0.45 8.14 -51.92 -0.42 0.02 16 45 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.22 0.96 8.06 -52.48 -0.42 0.54 16 47 H 0.10 0.62 8.12 -51.93 -0.42 0.20 16 48 H 0.11 0.52 3.98 -51.93 -0.21 0.32 16 LS Contribution 385.66 15.07 5.81 5.81 Total: -1.00 -36.30 385.66 -8.65 -44.95 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -7.28 Total: 3.10 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: -2.19 Total: 3.81 kcal Atomic # 7 Polarization: -62.49 SS G_CDS: 0.27 Total: -62.21 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: -0.24 Total: -12.49 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.30 -8.65 -44.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725802975.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.380 kcal (2) G-P(sol) polarization free energy of solvation -36.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds