Wall clock time and date at job start Tue Mar 31 2020 21:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46504 * 120.00367 * 2 1 4 4 C 1.52994 * 109.47305 * 276.44089 * 3 2 1 5 5 O 1.42901 * 109.47188 * 66.30805 * 4 3 2 6 6 C 1.42907 * 113.99927 * 180.02562 * 5 4 3 7 7 C 1.52991 * 109.46933 * 180.02562 * 6 5 4 8 8 N 1.46498 * 109.47578 * 65.00173 * 7 6 5 9 9 C 1.36936 * 120.00747 * 179.97438 * 8 7 6 10 10 H 1.08005 * 119.99507 * 359.97438 * 9 8 7 11 11 C 1.38802 * 120.00537 * 179.97438 * 9 8 7 12 12 N 1.31625 * 119.99885 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00241 * 179.72556 * 11 9 8 14 14 H 1.48495 * 109.47636 * 89.99577 * 13 11 9 15 15 H 1.48503 * 109.47294 * 210.00267 * 13 11 9 16 16 H 1.48504 * 109.47012 * 329.99375 * 13 11 9 17 17 C 1.34780 * 119.99809 * 180.02562 * 2 1 3 18 18 O 1.21277 * 120.00029 * 6.03013 * 17 2 1 19 19 C 1.50706 * 119.99801 * 186.02678 * 17 2 1 20 20 H 1.09001 * 109.44907 * 47.19290 * 19 17 2 21 21 C 1.53144 * 109.45029 * 167.14198 * 19 17 2 22 22 C 1.53464 * 109.30562 * 189.46187 * 21 19 17 23 23 C 1.50795 * 108.13520 * 311.29781 * 22 21 19 24 24 N 1.29831 * 128.52242 * 195.89459 * 23 22 21 25 25 N 1.28907 * 109.48281 * 179.90061 * 24 23 22 26 26 C 1.30837 * 109.73659 * 0.02562 * 25 24 23 27 27 N 1.34685 * 107.07384 * 0.04083 * 26 25 24 28 28 C 1.46245 * 128.85804 * 179.88356 * 27 26 25 29 29 H 1.09000 * 109.46861 * 85.47347 * 1 2 3 30 30 H 1.08993 * 109.47164 * 205.47482 * 1 2 3 31 31 H 1.09002 * 109.46508 * 325.47455 * 1 2 3 32 32 H 1.08994 * 109.47116 * 156.43357 * 3 2 1 33 33 H 1.09000 * 109.46705 * 36.43923 * 3 2 1 34 34 H 1.09007 * 109.46709 * 306.31080 * 4 3 2 35 35 H 1.08993 * 109.47315 * 186.31323 * 4 3 2 36 36 H 1.08998 * 109.46974 * 59.99912 * 6 5 4 37 37 H 1.08999 * 109.46744 * 299.99999 * 6 5 4 38 38 H 1.08999 * 109.47586 * 304.99495 * 7 6 5 39 39 H 1.09011 * 109.46988 * 184.99782 * 7 6 5 40 40 H 0.97005 * 119.99929 * 359.97438 * 8 7 6 41 41 H 0.97005 * 119.99801 * 179.97438 * 12 11 9 42 42 H 1.09002 * 109.49782 * 309.41480 * 21 19 17 43 43 H 1.09002 * 109.49198 * 69.48080 * 21 19 17 44 44 H 1.09007 * 109.72195 * 70.95529 * 22 21 19 45 45 H 1.09001 * 109.72609 * 191.58333 * 22 21 19 46 46 H 1.08008 * 126.46015 * 180.02562 * 26 25 24 47 47 H 1.08996 * 109.61535 * 77.34889 * 28 27 26 48 48 H 1.09003 * 109.57307 * 316.89407 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3125 1.7913 -1.4333 5 8 1.0139 2.1352 -1.9205 6 6 1.0091 2.6364 -3.2588 7 6 -0.4252 2.9706 -3.6730 8 7 -0.9291 4.0697 -2.8458 9 6 -2.1994 4.5439 -3.0368 10 1 -2.8298 4.1079 -3.7977 11 6 -2.6769 5.5849 -2.2526 12 7 -1.9088 6.1160 -1.3250 13 14 -4.4071 6.2369 -2.5184 14 1 -5.3570 5.4846 -1.6600 15 1 -4.4532 7.6780 -2.1627 16 1 -4.7867 6.0666 -3.9439 17 6 2.1389 -1.1673 -0.0005 18 8 1.5375 -2.2146 -0.1113 19 6 3.6397 -1.1709 0.1365 20 1 3.9309 -0.5143 0.9563 21 6 4.1217 -2.5950 0.4279 22 6 5.6102 -2.5607 0.7999 23 6 6.3333 -1.7345 -0.2337 24 7 7.6081 -1.6724 -0.4719 25 7 7.8251 -0.8486 -1.4393 26 6 6.6902 -0.3498 -1.8579 27 7 5.7164 -0.8965 -1.1050 28 6 4.2728 -0.6710 -1.1672 29 1 -0.3633 0.0811 -1.0245 30 1 -0.3633 -0.9277 0.4420 31 1 -0.3632 0.8467 0.5825 32 1 3.1950 1.1123 0.4108 33 1 1.6633 1.9967 0.6104 34 1 2.7459 1.0184 -2.0682 35 1 2.9517 2.6741 -1.4481 36 1 1.4152 1.8808 -3.9312 37 1 1.6213 3.5367 -3.3117 38 1 -1.0570 2.0931 -3.5354 39 1 -0.4406 3.2685 -4.7215 40 1 -0.3627 4.4616 -2.1626 41 1 -2.2424 6.8437 -0.7772 42 1 3.5489 -3.0105 1.2570 43 1 3.9816 -3.2148 -0.4578 44 1 5.7331 -2.1087 1.7842 45 1 6.0108 -3.5744 0.8079 46 1 6.5591 0.3656 -2.6564 47 1 3.8529 -1.2190 -2.0107 48 1 4.0743 0.3942 -1.2851 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725802975.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:01 Heat of formation + Delta-G solvation = -1.656806 kcal Electronic energy + Delta-G solvation = -29876.074424 eV Core-core repulsion = 25774.530118 eV Total energy + Delta-G solvation = -4101.544306 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -44.33802 -41.48317 -39.12709 -37.91156 -37.02736 -36.10060 -34.64926 -33.38633 -32.46452 -31.09698 -30.25319 -29.19651 -27.96750 -25.79767 -25.49132 -24.47916 -23.80915 -23.30040 -22.78110 -21.19505 -19.85123 -19.23921 -18.63942 -18.54051 -17.40768 -17.33565 -17.17083 -16.95932 -16.72504 -16.24251 -16.04306 -15.63406 -15.41047 -15.30746 -15.13074 -14.97547 -14.60906 -14.39600 -14.18137 -13.81469 -13.46899 -13.32725 -13.19292 -13.03818 -12.97532 -12.78187 -12.67097 -12.60035 -12.57981 -12.30943 -12.12921 -12.04248 -11.88854 -11.67313 -11.38537 -11.16512 -11.01358 -10.95866 -10.45687 -10.22333 -9.78347 -8.96493 -7.93192 -5.20645 0.84565 1.22860 1.48238 1.49293 1.55250 1.57482 1.83594 1.89618 2.57169 2.76981 3.05258 3.15784 3.30781 3.40967 3.42140 3.75006 3.85212 3.93664 3.96758 4.00120 4.01807 4.14616 4.19533 4.26931 4.33997 4.42874 4.44133 4.50976 4.55428 4.57502 4.65574 4.67581 4.73038 4.82198 4.94215 4.95462 4.99848 5.02673 5.07305 5.16619 5.19237 5.36047 5.50177 5.87502 6.23713 6.29155 6.41610 6.98410 7.36393 7.69324 8.12852 8.36905 9.30131 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019623 B = 0.002356 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.560130 B =11882.944426 C =12711.020344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.600 5.600 3 C 0.100 3.900 4 C 0.027 3.973 5 O -0.394 6.394 6 C 0.069 3.931 7 C 0.147 3.853 8 N -0.738 5.738 9 C -0.244 4.244 10 H 0.073 0.927 11 C -0.074 4.074 12 N -0.966 5.966 13 Si 0.970 3.030 14 H -0.289 1.289 15 H -0.295 1.295 16 H -0.271 1.271 17 C 0.522 3.478 18 O -0.568 6.568 19 C -0.116 4.116 20 H 0.134 0.866 21 C -0.100 4.100 22 C -0.028 4.028 23 C 0.177 3.823 24 N -0.336 5.336 25 N -0.349 5.349 26 C 0.169 3.831 27 N -0.469 5.469 28 C 0.107 3.893 29 H 0.046 0.954 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.130 0.870 33 H 0.089 0.911 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.052 0.948 38 H 0.018 0.982 39 H 0.040 0.960 40 H 0.377 0.623 41 H 0.250 0.750 42 H 0.099 0.901 43 H 0.068 0.932 44 H 0.117 0.883 45 H 0.113 0.887 46 H 0.257 0.743 47 H 0.099 0.901 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.584 -15.229 3.600 22.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.331 5.331 3 C -0.022 4.022 4 C -0.050 4.050 5 O -0.314 6.314 6 C -0.008 4.008 7 C 0.021 3.979 8 N -0.382 5.382 9 C -0.376 4.376 10 H 0.090 0.910 11 C -0.266 4.266 12 N -0.617 5.617 13 Si 0.799 3.201 14 H -0.216 1.216 15 H -0.221 1.221 16 H -0.196 1.196 17 C 0.310 3.690 18 O -0.447 6.447 19 C -0.138 4.138 20 H 0.152 0.848 21 C -0.139 4.139 22 C -0.068 4.068 23 C -0.092 4.092 24 N -0.175 5.175 25 N -0.187 5.187 26 C -0.120 4.120 27 N -0.160 5.160 28 C -0.015 4.015 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.148 0.852 33 H 0.108 0.892 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.070 0.930 38 H 0.036 0.964 39 H 0.058 0.942 40 H 0.209 0.791 41 H 0.059 0.941 42 H 0.117 0.883 43 H 0.087 0.913 44 H 0.135 0.865 45 H 0.131 0.869 46 H 0.273 0.727 47 H 0.117 0.883 48 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 16.413 -16.033 3.625 23.229 hybrid contribution -2.127 1.155 -0.336 2.444 sum 14.286 -14.878 3.290 20.887 Atomic orbital electron populations 1.21510 0.78968 1.02263 1.01827 1.47860 1.07334 1.06196 1.71719 1.22065 0.99268 0.84696 0.96208 1.23415 0.86011 1.00162 0.95434 1.88042 1.28869 1.84417 1.30052 1.22620 0.96447 0.98020 0.83696 1.20881 0.93026 0.89997 0.93997 1.42449 1.13982 1.39472 1.42251 1.19619 0.91710 1.12166 1.14134 0.90953 1.25500 1.02026 1.00099 0.98985 1.69810 1.37620 1.28884 1.25406 0.85199 0.80133 0.76904 0.77873 1.21582 1.22146 1.19569 1.20514 0.89662 0.82934 0.75906 1.90725 1.70809 1.32498 1.50630 1.21673 0.90763 1.01692 0.99662 0.84802 1.21502 0.94393 0.93767 1.04209 1.20399 0.91896 0.99711 0.94766 1.25362 0.89974 0.96756 0.97069 1.73991 1.13810 1.16979 1.12748 1.74417 1.24274 1.10583 1.09445 1.27026 0.83051 1.01880 1.00021 1.46220 1.09321 1.33204 1.27254 1.22403 0.75135 1.05151 0.98797 0.93485 0.91412 0.91039 0.85204 0.89227 0.91585 0.90246 0.90506 0.92952 0.96443 0.94241 0.79107 0.94076 0.88264 0.91288 0.86452 0.86868 0.72689 0.88289 0.85370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.29 9.85 127.77 1.26 3.55 16 2 N -0.60 -10.82 2.87 -846.76 -2.43 -13.25 16 3 C 0.10 1.33 5.36 86.38 0.46 1.79 16 4 C 0.03 0.42 5.32 71.98 0.38 0.80 16 5 O -0.39 -10.67 9.35 -148.98 -1.39 -12.06 16 6 C 0.07 1.86 6.07 71.98 0.44 2.29 16 7 C 0.15 5.51 6.64 86.38 0.57 6.09 16 8 N -0.74 -36.32 5.55 -343.46 -1.91 -38.23 16 9 C -0.24 -13.42 9.99 84.03 0.84 -12.58 16 10 H 0.07 3.84 7.83 -2.91 -0.02 3.81 16 11 C -0.07 -4.16 5.50 84.86 0.47 -3.70 16 12 N -0.97 -57.81 13.06 21.65 0.28 -57.53 16 13 Si 0.97 45.39 29.55 68.60 2.03 47.42 16 14 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 15 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 16 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 17 C 0.52 9.17 6.90 87.66 0.60 9.78 16 18 O -0.57 -14.67 15.60 -3.02 -0.05 -14.71 16 19 C -0.12 -1.15 1.69 -11.39 -0.02 -1.17 16 20 H 0.13 0.74 6.95 -2.39 -0.02 0.72 16 21 C -0.10 -1.04 4.60 30.80 0.14 -0.90 16 22 C -0.03 -0.27 6.33 30.03 0.19 -0.08 16 23 C 0.18 2.96 7.75 138.14 1.07 4.03 16 24 N -0.34 -8.17 12.21 -50.28 -0.61 -8.79 16 25 N -0.35 -8.27 12.23 -60.31 -0.74 -9.01 16 26 C 0.17 2.44 12.83 180.28 2.31 4.76 16 27 N -0.47 -6.03 3.11 -519.46 -1.62 -7.64 16 28 C 0.11 0.92 5.39 86.53 0.47 1.39 16 29 H 0.05 1.30 7.87 -2.39 -0.02 1.28 16 30 H 0.07 1.62 7.38 -2.39 -0.02 1.60 16 31 H 0.07 1.71 8.01 -2.39 -0.02 1.69 16 32 H 0.13 0.72 5.34 -2.39 -0.01 0.70 16 33 H 0.09 1.45 8.02 -2.39 -0.02 1.43 16 34 H 0.07 0.73 5.94 -2.38 -0.01 0.72 16 35 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 40 H 0.38 19.70 7.67 -92.70 -0.71 18.99 16 41 H 0.25 14.53 8.31 -92.70 -0.77 13.76 16 42 H 0.10 1.01 8.00 -2.39 -0.02 0.99 16 43 H 0.07 0.92 8.12 -2.39 -0.02 0.90 16 44 H 0.12 0.72 8.14 -2.38 -0.02 0.70 16 45 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.26 1.29 8.06 -2.91 -0.02 1.27 16 47 H 0.10 0.93 8.12 -2.39 -0.02 0.91 16 48 H 0.13 0.63 3.98 -2.39 -0.01 0.62 16 Total: -1.00 -80.89 385.66 3.02 -77.87 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: 0.27 Total: 19.90 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: 9.19 Total: 16.03 kcal Atomic # 7 Polarization: -127.42 SS G_CDS: -7.02 Total: -134.45 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -1.44 Total: -26.77 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -80.89 3.02 -77.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725802975.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.209 kcal (2) G-P(sol) polarization free energy of solvation -80.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds