Wall clock time and date at job start Tue Mar 31 2020 21:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36945 * 120.00117 * 2 1 4 4 H 1.07996 * 119.99945 * 203.04441 * 3 2 1 5 5 C 1.38812 * 119.99852 * 23.04531 * 3 2 1 6 6 N 1.31623 * 119.99970 * 12.93003 * 5 3 2 7 7 Si 1.86795 * 119.99819 * 192.92940 * 5 3 2 8 8 H 1.48500 * 109.47020 * 90.00095 * 7 5 3 9 9 H 1.48504 * 109.46961 * 209.99948 * 7 5 3 10 10 H 1.48500 * 109.47293 * 329.99851 * 7 5 3 11 11 C 1.46504 * 120.00144 * 179.97438 * 2 1 3 12 12 C 1.53007 * 109.46573 * 90.00346 * 11 2 1 13 13 C 1.53005 * 109.46814 * 180.02562 * 12 11 2 14 14 N 1.46503 * 109.46842 * 179.97438 * 13 12 11 15 15 C 1.34771 * 119.99463 * 179.97438 * 14 13 12 16 16 O 1.21595 * 120.00555 * 359.97438 * 15 14 13 17 17 C 1.47530 * 119.99644 * 180.02562 * 15 14 13 18 18 C 1.36600 * 125.76689 * 179.71451 * 17 15 14 19 19 N 1.34818 * 106.83421 * 179.89549 * 18 17 15 20 20 C 1.46496 * 126.59024 * 180.13322 * 19 18 17 21 21 C 1.53010 * 109.47156 * 125.24710 * 20 19 18 22 22 H 1.08994 * 110.45338 * 52.39233 * 21 20 19 23 23 C 1.54509 * 110.51056 * 174.99556 * 21 20 19 24 24 C 1.54476 * 104.05822 * 118.64239 * 23 21 20 25 25 O 1.44426 * 104.80717 * 23.97948 * 24 23 21 26 26 C 1.44425 * 105.27215 * 319.48570 * 25 24 23 27 27 N 1.40206 * 106.81299 * 0.35722 * 19 18 17 28 28 N 1.28762 * 108.36695 * 359.77203 * 27 19 18 29 29 H 1.09001 * 109.46883 * 275.12634 * 1 2 3 30 30 H 1.08999 * 109.46984 * 35.12404 * 1 2 3 31 31 H 1.08999 * 109.47086 * 155.12268 * 1 2 3 32 32 H 0.96994 * 119.99288 * 180.02562 * 6 5 3 33 33 H 1.08994 * 109.47135 * 330.00769 * 11 2 1 34 34 H 1.09000 * 109.47451 * 210.00126 * 11 2 1 35 35 H 1.09000 * 109.47053 * 300.00024 * 12 11 2 36 36 H 1.08994 * 109.47045 * 60.00368 * 12 11 2 37 37 H 1.09000 * 109.46966 * 299.99632 * 13 12 11 38 38 H 1.09000 * 109.47354 * 59.99403 * 13 12 11 39 39 H 0.96991 * 120.00112 * 0.02562 * 14 13 12 40 40 H 1.07995 * 126.58578 * 0.04107 * 18 17 15 41 41 H 1.09004 * 109.46944 * 245.24046 * 20 19 18 42 42 H 1.08995 * 109.47582 * 5.24278 * 20 19 18 43 43 H 1.08991 * 110.50921 * 237.28665 * 23 21 20 44 44 H 1.09001 * 110.51380 * 359.97438 * 23 21 20 45 45 H 1.09008 * 110.37189 * 142.81288 * 24 23 21 46 46 H 1.08995 * 110.37592 * 265.14136 * 24 23 21 47 47 H 1.08998 * 110.37400 * 281.67808 * 26 25 24 48 48 H 1.09002 * 110.37011 * 159.34286 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1650 1.2232 -0.3661 5 6 1.5387 2.3401 0.4706 6 7 0.4118 2.2597 1.1459 7 14 2.3159 4.0073 0.1455 8 1 1.7988 4.5533 -1.1350 9 1 1.9759 4.9363 1.2531 10 1 3.7909 3.8577 0.0602 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7109 -1.4419 13 6 3.2170 -3.0363 -1.4413 14 7 3.4607 -3.4600 -2.8224 15 6 4.1232 -4.6076 -3.0682 16 8 4.5190 -5.2911 -2.1437 17 6 4.3690 -5.0340 -4.4589 18 6 5.0293 -6.1669 -4.8418 19 7 5.0318 -6.1806 -6.1899 20 6 5.6243 -7.2065 -7.0517 21 6 4.5639 -7.7333 -8.0207 22 1 4.0866 -6.9078 -8.5486 23 6 5.1928 -8.7261 -9.0239 24 6 4.4471 -10.0523 -8.7567 25 8 3.1884 -9.6564 -8.1696 26 6 3.5128 -8.5772 -7.2662 27 7 4.3627 -5.0218 -6.6085 28 7 3.9863 -4.3707 -5.5634 29 1 -0.3633 0.0918 1.0236 30 1 -0.3633 0.8405 -0.5913 31 1 -0.3633 -0.9323 -0.4323 32 1 -0.0153 3.0663 1.4743 33 1 1.6084 -2.0282 0.5146 34 1 3.1499 -1.1382 0.5143 35 1 1.5001 -1.8414 -1.9556 36 1 3.0416 -0.9515 -1.9559 37 1 4.1694 -2.9061 -0.9274 38 1 2.6277 -3.7955 -0.9273 39 1 3.1459 -2.9142 -3.5598 40 1 5.4637 -6.9102 -4.1898 41 1 6.4499 -6.7737 -7.6168 42 1 5.9951 -8.0271 -6.4376 43 1 5.0241 -8.3926 -10.0477 44 1 6.2591 -8.8412 -8.8298 45 1 4.2783 -10.5876 -9.6912 46 1 5.0124 -10.6719 -8.0606 47 1 3.9348 -8.9705 -6.3413 48 1 2.6262 -7.9792 -7.0556 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731274263.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:27 Heat of formation + Delta-G solvation = 33.438014 kcal Electronic energy + Delta-G solvation = -27930.363327 eV Core-core repulsion = 23830.340846 eV Total energy + Delta-G solvation = -4100.022480 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.56458 -40.14302 -39.31882 -36.23010 -35.82255 -34.73459 -32.88648 -32.04925 -31.21234 -30.16130 -29.66958 -27.18344 -25.95397 -25.46801 -23.83158 -23.48559 -22.54121 -21.82848 -21.32447 -20.59725 -19.95988 -18.41997 -17.21936 -16.78863 -16.67951 -16.28564 -16.14958 -15.98382 -15.81524 -15.33641 -14.92979 -14.80769 -14.62601 -14.00605 -13.96405 -13.68337 -13.39188 -13.24424 -12.88870 -12.66062 -12.56659 -12.45472 -12.12615 -11.89594 -11.68683 -11.62524 -11.39621 -11.32493 -10.97833 -10.76703 -10.75289 -10.73031 -10.45964 -10.43776 -10.21247 -10.09852 -9.80912 -9.75176 -9.61813 -8.93678 -8.49985 -6.69210 -5.67229 -3.14324 0.78348 1.49389 1.56592 3.13886 3.20510 3.23978 3.41863 3.48001 3.49316 3.60216 3.74350 3.96228 4.02201 4.15695 4.31323 4.44317 4.52456 4.54320 4.56038 4.61004 4.69300 4.90787 5.00589 5.09432 5.11926 5.24133 5.27006 5.35771 5.47221 5.50383 5.50930 5.85533 5.92510 5.95182 6.10184 6.14819 6.21509 6.46930 6.57582 6.80250 6.82266 6.99857 7.42918 7.43977 7.70950 7.78402 7.85757 8.16593 8.45451 9.29211 9.92866 10.41877 11.37517 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.025079 B = 0.001607 C = 0.001589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.213941 B =17420.792820 C =17622.222840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.603 5.603 3 C -0.254 4.254 4 H 0.068 0.932 5 C 0.001 3.999 6 N -0.908 5.908 7 Si 0.904 3.096 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.280 1.280 11 C 0.156 3.844 12 C -0.152 4.152 13 C 0.121 3.879 14 N -0.708 5.708 15 C 0.600 3.400 16 O -0.544 6.544 17 C -0.096 4.096 18 C 0.091 3.909 19 N -0.364 5.364 20 C 0.131 3.869 21 C -0.138 4.138 22 H 0.105 0.895 23 C -0.147 4.147 24 C 0.042 3.958 25 O -0.370 6.370 26 C 0.049 3.951 27 N -0.062 5.062 28 N -0.201 5.201 29 H 0.031 0.969 30 H 0.039 0.961 31 H -0.002 1.002 32 H 0.252 0.748 33 H 0.038 0.962 34 H 0.049 0.951 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.409 0.591 40 H 0.205 0.795 41 H 0.104 0.896 42 H 0.108 0.892 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.095 0.905 46 H 0.062 0.938 47 H 0.062 0.938 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.928 -26.322 -20.566 35.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.325 5.325 3 C -0.384 4.384 4 H 0.086 0.914 5 C -0.197 4.197 6 N -0.553 5.553 7 Si 0.734 3.266 8 H -0.216 1.216 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.028 3.972 12 C -0.193 4.193 13 C -0.003 4.003 14 N -0.358 5.358 15 C 0.383 3.617 16 O -0.421 6.421 17 C -0.236 4.236 18 C -0.065 4.065 19 N -0.149 5.149 20 C 0.010 3.990 21 C -0.158 4.158 22 H 0.123 0.877 23 C -0.185 4.185 24 C -0.035 4.035 25 O -0.289 6.289 26 C -0.028 4.028 27 N -0.042 5.042 28 N -0.075 5.075 29 H 0.049 0.951 30 H 0.058 0.942 31 H 0.016 0.984 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.244 0.756 40 H 0.221 0.779 41 H 0.123 0.877 42 H 0.126 0.874 43 H 0.104 0.896 44 H 0.102 0.898 45 H 0.113 0.887 46 H 0.081 0.919 47 H 0.080 0.920 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 11.411 -25.942 -21.043 35.298 hybrid contribution 0.854 0.699 0.198 1.121 sum 12.265 -25.243 -20.844 34.959 Atomic orbital electron populations 1.20787 0.82678 0.95334 0.99435 1.43890 1.01848 1.00678 1.86117 1.19204 0.98271 0.85654 1.35265 0.91405 1.25029 0.97943 0.98528 0.98246 1.70075 1.19493 1.27103 1.38671 0.86256 0.78755 0.84195 0.77345 1.21555 1.21782 1.20499 1.20597 0.96349 0.88503 0.91799 1.22552 0.99619 0.94160 1.02925 1.21532 1.00610 0.97166 0.80970 1.45959 1.56477 1.22964 1.10430 1.16770 0.78299 0.81420 0.85208 1.90807 1.52487 1.54682 1.44108 1.21580 1.10120 0.97159 0.94693 1.23389 0.98530 0.99794 0.84803 1.50514 1.39890 1.19031 1.05488 1.22161 0.95835 0.88407 0.92625 1.22930 0.96250 1.00155 0.96453 0.87671 1.22959 1.00709 0.94682 1.00150 1.23471 0.85111 0.95988 0.98933 1.89196 1.28450 1.51992 1.59226 1.23508 0.98787 0.87917 0.92554 1.81998 1.12612 0.92401 1.17201 1.74680 1.14005 1.22401 0.96414 0.95106 0.94193 0.98386 0.93809 0.94380 0.93250 0.92086 0.91417 0.91325 0.91470 0.75615 0.77863 0.87739 0.87385 0.89576 0.89766 0.88651 0.91939 0.92000 0.88788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.07 8.98 59.84 0.54 4.60 16 2 N -0.60 -15.32 2.92 -181.12 -0.53 -15.85 16 3 C -0.25 -7.07 9.65 -15.06 -0.15 -7.21 16 4 H 0.07 1.84 7.86 -52.49 -0.41 1.43 16 5 C 0.00 0.02 5.10 -17.43 -0.09 -0.07 16 6 N -0.91 -26.93 10.71 55.49 0.59 -26.34 16 7 Si 0.90 22.16 29.57 -169.99 -5.03 17.14 16 8 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 9 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 11 C 0.16 3.17 5.65 -4.04 -0.02 3.15 16 12 C -0.15 -2.57 5.65 -26.72 -0.15 -2.72 16 13 C 0.12 1.77 5.67 -4.04 -0.02 1.75 16 14 N -0.71 -9.71 5.55 -61.35 -0.34 -10.05 16 15 C 0.60 8.32 7.82 -12.47 -0.10 8.23 16 16 O -0.54 -8.76 16.86 5.28 0.09 -8.67 16 17 C -0.10 -1.12 6.99 -83.55 -0.58 -1.71 16 18 C 0.09 0.74 11.27 -16.83 -0.19 0.55 16 19 N -0.36 -2.62 3.58 -61.06 -0.22 -2.84 16 20 C 0.13 0.40 5.69 -4.04 -0.02 0.38 16 21 C -0.14 -0.56 3.24 -89.05 -0.29 -0.85 16 22 H 0.10 0.60 8.06 -51.93 -0.42 0.18 16 23 C -0.15 -0.34 6.74 -25.16 -0.17 -0.51 16 24 C 0.04 0.16 7.63 37.93 0.29 0.45 16 25 O -0.37 -2.79 11.65 -35.23 -0.41 -3.20 16 26 C 0.05 0.29 7.08 37.93 0.27 0.56 16 27 N -0.06 -0.67 13.58 60.35 0.82 0.15 16 28 N -0.20 -2.50 12.04 32.85 0.40 -2.11 16 29 H 0.03 0.83 7.34 -51.93 -0.38 0.45 16 30 H 0.04 1.07 7.34 -51.93 -0.38 0.69 16 31 H 0.00 -0.05 8.03 -51.93 -0.42 -0.47 16 32 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 33 H 0.04 0.73 8.07 -51.93 -0.42 0.31 16 34 H 0.05 1.01 8.04 -51.93 -0.42 0.59 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.41 5.25 8.16 -40.82 -0.33 4.92 16 40 H 0.20 1.02 8.06 -52.49 -0.42 0.59 16 41 H 0.10 0.19 8.14 -51.93 -0.42 -0.23 16 42 H 0.11 0.05 7.90 -51.93 -0.41 -0.36 16 43 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 44 H 0.08 0.03 7.73 -51.93 -0.40 -0.38 16 45 H 0.10 0.27 8.14 -51.92 -0.42 -0.15 16 46 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 47 H 0.06 0.29 7.74 -51.93 -0.40 -0.11 16 48 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 400.88 15.07 6.04 6.04 Total: -1.00 -35.15 400.88 -7.03 -42.18 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -7.76 Total: -3.06 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: -0.69 Total: 6.60 kcal Atomic # 7 Polarization: -57.75 SS G_CDS: 0.72 Total: -57.03 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: -0.32 Total: -11.87 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.03 Total: 17.14 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.15 -7.03 -42.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731274263.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.617 kcal (2) G-P(sol) polarization free energy of solvation -35.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds