Wall clock time and date at job start Tue Mar 31 2020 21:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36945 * 120.00117 * 2 1 4 4 H 1.07996 * 119.99945 * 203.04441 * 3 2 1 5 5 C 1.38812 * 119.99852 * 23.04531 * 3 2 1 6 6 N 1.31623 * 119.99970 * 12.93003 * 5 3 2 7 7 Si 1.86795 * 119.99819 * 192.92940 * 5 3 2 8 8 H 1.48500 * 109.47020 * 90.00095 * 7 5 3 9 9 H 1.48504 * 109.46961 * 209.99948 * 7 5 3 10 10 H 1.48500 * 109.47293 * 329.99851 * 7 5 3 11 11 C 1.46504 * 120.00144 * 179.97438 * 2 1 3 12 12 C 1.53007 * 109.46573 * 90.00346 * 11 2 1 13 13 C 1.53005 * 109.46814 * 180.02562 * 12 11 2 14 14 N 1.46503 * 109.46842 * 179.97438 * 13 12 11 15 15 C 1.34771 * 119.99463 * 179.97438 * 14 13 12 16 16 O 1.21595 * 120.00555 * 359.97438 * 15 14 13 17 17 C 1.47530 * 119.99644 * 180.02562 * 15 14 13 18 18 C 1.36600 * 125.76689 * 179.71451 * 17 15 14 19 19 N 1.34818 * 106.83421 * 179.89549 * 18 17 15 20 20 C 1.46496 * 126.59024 * 180.13322 * 19 18 17 21 21 C 1.53010 * 109.47156 * 125.24710 * 20 19 18 22 22 H 1.08994 * 110.45338 * 52.39233 * 21 20 19 23 23 C 1.54509 * 110.51056 * 174.99556 * 21 20 19 24 24 C 1.54476 * 104.05822 * 118.64239 * 23 21 20 25 25 O 1.44426 * 104.80717 * 23.97948 * 24 23 21 26 26 C 1.44425 * 105.27215 * 319.48570 * 25 24 23 27 27 N 1.40206 * 106.81299 * 0.35722 * 19 18 17 28 28 N 1.28762 * 108.36695 * 359.77203 * 27 19 18 29 29 H 1.09001 * 109.46883 * 275.12634 * 1 2 3 30 30 H 1.08999 * 109.46984 * 35.12404 * 1 2 3 31 31 H 1.08999 * 109.47086 * 155.12268 * 1 2 3 32 32 H 0.96994 * 119.99288 * 180.02562 * 6 5 3 33 33 H 1.08994 * 109.47135 * 330.00769 * 11 2 1 34 34 H 1.09000 * 109.47451 * 210.00126 * 11 2 1 35 35 H 1.09000 * 109.47053 * 300.00024 * 12 11 2 36 36 H 1.08994 * 109.47045 * 60.00368 * 12 11 2 37 37 H 1.09000 * 109.46966 * 299.99632 * 13 12 11 38 38 H 1.09000 * 109.47354 * 59.99403 * 13 12 11 39 39 H 0.96991 * 120.00112 * 0.02562 * 14 13 12 40 40 H 1.07995 * 126.58578 * 0.04107 * 18 17 15 41 41 H 1.09004 * 109.46944 * 245.24046 * 20 19 18 42 42 H 1.08995 * 109.47582 * 5.24278 * 20 19 18 43 43 H 1.08991 * 110.50921 * 237.28665 * 23 21 20 44 44 H 1.09001 * 110.51380 * 359.97438 * 23 21 20 45 45 H 1.09008 * 110.37189 * 142.81288 * 24 23 21 46 46 H 1.08995 * 110.37592 * 265.14136 * 24 23 21 47 47 H 1.08998 * 110.37400 * 281.67808 * 26 25 24 48 48 H 1.09002 * 110.37011 * 159.34286 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1650 1.2232 -0.3661 5 6 1.5387 2.3401 0.4706 6 7 0.4118 2.2597 1.1459 7 14 2.3159 4.0073 0.1455 8 1 1.7988 4.5533 -1.1350 9 1 1.9759 4.9363 1.2531 10 1 3.7909 3.8577 0.0602 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7109 -1.4419 13 6 3.2170 -3.0363 -1.4413 14 7 3.4607 -3.4600 -2.8224 15 6 4.1232 -4.6076 -3.0682 16 8 4.5190 -5.2911 -2.1437 17 6 4.3690 -5.0340 -4.4589 18 6 5.0293 -6.1669 -4.8418 19 7 5.0318 -6.1806 -6.1899 20 6 5.6243 -7.2065 -7.0517 21 6 4.5639 -7.7333 -8.0207 22 1 4.0866 -6.9078 -8.5486 23 6 5.1928 -8.7261 -9.0239 24 6 4.4471 -10.0523 -8.7567 25 8 3.1884 -9.6564 -8.1696 26 6 3.5128 -8.5772 -7.2662 27 7 4.3627 -5.0218 -6.6085 28 7 3.9863 -4.3707 -5.5634 29 1 -0.3633 0.0918 1.0236 30 1 -0.3633 0.8405 -0.5913 31 1 -0.3633 -0.9323 -0.4323 32 1 -0.0153 3.0663 1.4743 33 1 1.6084 -2.0282 0.5146 34 1 3.1499 -1.1382 0.5143 35 1 1.5001 -1.8414 -1.9556 36 1 3.0416 -0.9515 -1.9559 37 1 4.1694 -2.9061 -0.9274 38 1 2.6277 -3.7955 -0.9273 39 1 3.1459 -2.9142 -3.5598 40 1 5.4637 -6.9102 -4.1898 41 1 6.4499 -6.7737 -7.6168 42 1 5.9951 -8.0271 -6.4376 43 1 5.0241 -8.3926 -10.0477 44 1 6.2591 -8.8412 -8.8298 45 1 4.2783 -10.5876 -9.6912 46 1 5.0124 -10.6719 -8.0606 47 1 3.9348 -8.9705 -6.3413 48 1 2.6262 -7.9792 -7.0556 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731274263.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:25 Heat of formation + Delta-G solvation = 7.706242 kcal Electronic energy + Delta-G solvation = -27931.479140 eV Core-core repulsion = 23830.340846 eV Total energy + Delta-G solvation = -4101.138294 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.27824 -40.60094 -40.31736 -37.93535 -36.36349 -36.14404 -33.80869 -33.32939 -32.23899 -31.35307 -30.32877 -27.97308 -27.69905 -26.95347 -24.75560 -24.13549 -23.28348 -23.01623 -22.15197 -21.80031 -20.94784 -19.17549 -18.70366 -17.75242 -17.35730 -17.22295 -16.97258 -16.68136 -16.60852 -16.44803 -16.19595 -15.62666 -15.55926 -15.38014 -15.04899 -14.70666 -14.58489 -14.45558 -14.01680 -13.75471 -13.35786 -13.11955 -13.02763 -12.96023 -12.78538 -12.62740 -12.48483 -12.43146 -12.36366 -12.26306 -12.16442 -12.07571 -11.82557 -11.60809 -11.45848 -11.29341 -11.28502 -10.83744 -10.62045 -10.43449 -10.03101 -8.75807 -7.80591 -5.30100 0.13309 0.60237 1.05754 1.47413 1.48716 1.57405 2.13291 2.22921 2.53018 2.90584 3.16044 3.25631 3.32739 3.47532 3.67892 3.73340 3.74221 3.92008 3.95653 4.07488 4.15026 4.19162 4.27548 4.31248 4.38900 4.50109 4.52311 4.66804 4.67862 4.69831 4.80471 4.83141 4.88163 4.88822 4.96123 5.01191 5.11666 5.26521 5.31586 5.40508 5.43091 5.53393 5.65750 5.73025 5.77863 6.35130 6.41882 6.88694 7.11607 7.17643 7.90080 8.33640 9.22512 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.025079 B = 0.001607 C = 0.001589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.213941 B =17420.792820 C =17622.222840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.621 5.621 3 C -0.261 4.261 4 H 0.072 0.928 5 C -0.056 4.056 6 N -0.941 5.941 7 Si 0.968 3.032 8 H -0.287 1.287 9 H -0.295 1.295 10 H -0.268 1.268 11 C 0.151 3.849 12 C -0.131 4.131 13 C 0.133 3.867 14 N -0.709 5.709 15 C 0.602 3.398 16 O -0.569 6.569 17 C -0.125 4.125 18 C 0.114 3.886 19 N -0.348 5.348 20 C 0.122 3.878 21 C -0.132 4.132 22 H 0.082 0.918 23 C -0.137 4.137 24 C 0.034 3.966 25 O -0.405 6.405 26 C 0.046 3.954 27 N -0.084 5.084 28 N -0.228 5.228 29 H 0.004 0.996 30 H 0.013 0.987 31 H 0.032 0.968 32 H 0.247 0.753 33 H 0.052 0.948 34 H 0.047 0.953 35 H 0.061 0.939 36 H 0.056 0.944 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.412 0.588 40 H 0.240 0.760 41 H 0.126 0.874 42 H 0.147 0.853 43 H 0.084 0.916 44 H 0.114 0.886 45 H 0.099 0.901 46 H 0.079 0.921 47 H 0.077 0.923 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.415 -28.267 -21.848 38.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.344 5.344 3 C -0.391 4.391 4 H 0.089 0.911 5 C -0.251 4.251 6 N -0.588 5.588 7 Si 0.797 3.203 8 H -0.214 1.214 9 H -0.222 1.222 10 H -0.192 1.192 11 C 0.025 3.975 12 C -0.171 4.171 13 C 0.009 3.991 14 N -0.359 5.359 15 C 0.387 3.613 16 O -0.448 6.448 17 C -0.265 4.265 18 C -0.044 4.044 19 N -0.132 5.132 20 C 0.004 3.996 21 C -0.152 4.152 22 H 0.101 0.899 23 C -0.175 4.175 24 C -0.043 4.043 25 O -0.325 6.325 26 C -0.031 4.031 27 N -0.065 5.065 28 N -0.101 5.101 29 H 0.023 0.977 30 H 0.032 0.968 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.248 0.752 40 H 0.256 0.744 41 H 0.144 0.856 42 H 0.165 0.835 43 H 0.102 0.898 44 H 0.133 0.867 45 H 0.118 0.882 46 H 0.097 0.903 47 H 0.095 0.905 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 13.926 -27.920 -22.385 38.400 hybrid contribution 0.111 1.127 0.522 1.247 sum 14.037 -26.793 -21.864 37.322 Atomic orbital electron populations 1.20536 0.82899 0.95888 0.97598 1.44152 1.02118 1.01805 1.86341 1.19544 0.98499 0.86820 1.34272 0.91063 1.25807 0.98715 1.01932 0.98610 1.70240 1.20925 1.27530 1.40060 0.85244 0.78456 0.79869 0.76757 1.21423 1.22165 1.19245 1.20780 0.95902 0.86878 0.93967 1.22192 0.99811 0.94965 1.00149 1.21279 1.00174 0.95901 0.81764 1.45885 1.56696 1.23311 1.09997 1.16993 0.77468 0.80825 0.86009 1.90783 1.53584 1.55331 1.45132 1.21446 1.12532 0.98976 0.93523 1.23867 0.96454 0.98848 0.85274 1.50777 1.38313 1.18431 1.05719 1.22672 0.95571 0.88524 0.92870 1.22815 0.96112 0.99538 0.96747 0.89912 1.22941 1.02095 0.93057 0.99445 1.23713 0.84120 0.96979 0.99438 1.89158 1.30886 1.52560 1.59880 1.23542 0.98428 0.87835 0.93318 1.81917 1.13649 0.93862 1.17040 1.74651 1.15002 1.23551 0.96916 0.97736 0.96831 0.94961 0.94344 0.92938 0.93483 0.91991 0.92499 0.91496 0.91060 0.75183 0.74411 0.85578 0.83531 0.89753 0.86717 0.88230 0.90299 0.90463 0.91308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.88 8.98 127.77 1.15 10.02 16 2 N -0.62 -31.54 2.92 -726.93 -2.12 -33.66 16 3 C -0.26 -14.53 9.65 84.03 0.81 -13.72 16 4 H 0.07 3.83 7.86 -2.91 -0.02 3.81 16 5 C -0.06 -3.19 5.10 84.86 0.43 -2.76 16 6 N -0.94 -56.86 10.71 21.65 0.23 -56.63 16 7 Si 0.97 45.88 29.57 68.60 2.03 47.91 16 8 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 9 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 10 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 11 C 0.15 6.03 5.65 86.38 0.49 6.52 16 12 C -0.13 -4.30 5.65 30.60 0.17 -4.13 16 13 C 0.13 3.75 5.67 86.38 0.49 4.24 16 14 N -0.71 -18.93 5.55 -466.26 -2.59 -21.52 16 15 C 0.60 16.15 7.82 86.69 0.68 16.82 16 16 O -0.57 -17.62 16.86 -4.02 -0.07 -17.69 16 17 C -0.12 -2.77 6.99 40.82 0.29 -2.48 16 18 C 0.11 1.54 11.27 83.85 0.95 2.48 16 19 N -0.35 -4.15 3.58 -347.09 -1.24 -5.39 16 20 C 0.12 0.30 5.69 86.38 0.49 0.79 16 21 C -0.13 -0.80 3.24 -9.78 -0.03 -0.83 16 22 H 0.08 0.90 8.06 -2.39 -0.02 0.88 16 23 C -0.14 -0.25 6.74 31.61 0.21 -0.04 16 24 C 0.03 0.18 7.63 72.48 0.55 0.73 16 25 O -0.41 -5.84 11.65 -148.98 -1.74 -7.57 16 26 C 0.05 0.48 7.08 72.48 0.51 1.00 16 27 N -0.08 -1.75 13.58 37.02 0.50 -1.25 16 28 N -0.23 -5.57 12.04 -49.99 -0.60 -6.18 16 29 H 0.00 0.24 7.34 -2.39 -0.02 0.22 16 30 H 0.01 0.72 7.34 -2.39 -0.02 0.70 16 31 H 0.03 1.37 8.03 -2.39 -0.02 1.35 16 32 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 33 H 0.05 1.94 8.07 -2.39 -0.02 1.92 16 34 H 0.05 1.88 8.04 -2.39 -0.02 1.87 16 35 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.41 10.45 8.16 -92.71 -0.76 9.70 16 40 H 0.24 1.38 8.06 -2.91 -0.02 1.36 16 41 H 0.13 -0.10 8.14 -2.38 -0.02 -0.12 16 42 H 0.15 -0.67 7.90 -2.39 -0.02 -0.69 16 43 H 0.08 0.21 8.14 -2.39 -0.02 0.20 16 44 H 0.11 -0.46 7.73 -2.39 -0.02 -0.48 16 45 H 0.10 0.41 8.14 -2.38 -0.02 0.39 16 46 H 0.08 0.16 8.14 -2.39 -0.02 0.14 16 47 H 0.08 0.54 7.74 -2.39 -0.02 0.52 16 48 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -78.11 400.88 1.80 -76.32 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: 0.20 Total: 6.99 kcal Atomic # 6 Polarization: 11.47 SS G_CDS: 7.19 Total: 18.66 kcal Atomic # 7 Polarization: -118.80 SS G_CDS: -5.82 Total: -124.62 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -1.80 Total: -25.26 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -78.11 1.80 -76.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731274263.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.024 kcal (2) G-P(sol) polarization free energy of solvation -78.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds