Wall clock time and date at job start Tue Mar 31 2020 21:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36935 * 119.99538 * 2 1 4 4 H 1.08003 * 120.00269 * 322.03252 * 3 2 1 5 5 C 1.38817 * 119.99902 * 142.03255 * 3 2 1 6 6 N 1.31616 * 120.00109 * 157.01776 * 5 3 2 7 7 Si 1.86794 * 119.99896 * 337.02243 * 5 3 2 8 8 H 1.48504 * 109.47307 * 95.67830 * 7 5 3 9 9 H 1.48499 * 109.47143 * 215.67884 * 7 5 3 10 10 H 1.48505 * 109.47301 * 335.67902 * 7 5 3 11 11 C 1.46495 * 119.99998 * 179.97438 * 2 1 3 12 12 C 1.52997 * 109.47199 * 90.00390 * 11 2 1 13 13 C 1.52999 * 109.47244 * 179.97438 * 12 11 2 14 14 N 1.46500 * 109.47263 * 180.02562 * 13 12 11 15 15 C 1.34779 * 119.99999 * 180.02562 * 14 13 12 16 16 O 1.21596 * 120.00064 * 359.97438 * 15 14 13 17 17 C 1.47517 * 119.99849 * 179.97438 * 15 14 13 18 18 C 1.36600 * 125.77182 * 179.71446 * 17 15 14 19 19 N 1.34807 * 106.84126 * 179.89646 * 18 17 15 20 20 C 1.46507 * 126.59604 * 180.13031 * 19 18 17 21 21 C 1.52998 * 109.47001 * 125.24443 * 20 19 18 22 22 H 1.08995 * 110.43899 * 303.91130 * 21 20 19 23 23 C 1.54812 * 110.48539 * 181.22185 * 21 20 19 24 24 C 1.54997 * 102.09307 * 220.44581 * 23 21 20 25 25 O 1.44380 * 103.48913 * 37.02372 * 24 23 21 26 26 C 1.43746 * 106.97859 * 319.94200 * 25 24 23 27 27 N 1.40207 * 106.81163 * 0.35857 * 19 18 17 28 28 N 1.28761 * 108.36736 * 359.77164 * 27 19 18 29 29 H 1.08999 * 109.47348 * 265.64641 * 1 2 3 30 30 H 1.08997 * 109.47288 * 25.65700 * 1 2 3 31 31 H 1.09005 * 109.46419 * 145.64980 * 1 2 3 32 32 H 0.97001 * 120.00292 * 180.02562 * 6 5 3 33 33 H 1.09004 * 109.47325 * 330.00136 * 11 2 1 34 34 H 1.09006 * 109.46637 * 210.00412 * 11 2 1 35 35 H 1.09002 * 109.47193 * 60.00216 * 12 11 2 36 36 H 1.08997 * 109.47098 * 300.00135 * 12 11 2 37 37 H 1.09004 * 109.47098 * 59.99858 * 13 12 11 38 38 H 1.09006 * 109.46820 * 300.00161 * 13 12 11 39 39 H 0.96993 * 119.99782 * 359.97438 * 14 13 12 40 40 H 1.08006 * 126.57531 * 0.04280 * 18 17 15 41 41 H 1.09000 * 109.47081 * 245.24719 * 20 19 18 42 42 H 1.08998 * 109.46498 * 5.24884 * 20 19 18 43 43 H 1.09000 * 110.90766 * 338.63960 * 23 21 20 44 44 H 1.09003 * 110.90605 * 102.24749 * 23 21 20 45 45 H 1.09001 * 110.61904 * 278.52667 * 24 23 21 46 46 H 1.08997 * 110.75503 * 155.58586 * 24 23 21 47 47 H 1.09005 * 109.87817 * 267.09305 * 26 25 24 48 48 H 1.08997 * 110.00447 * 146.01219 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 1.7810 2.0223 -0.5754 5 6 3.3174 1.3132 0.7396 6 7 4.2043 2.2305 0.4166 7 14 3.6302 0.1825 2.1932 8 1 4.4679 -0.9637 1.7575 9 1 4.3365 0.9339 3.2617 10 1 2.3349 -0.3216 2.7160 11 6 2.1975 -1.2687 0.0006 12 6 2.4526 -1.7110 -1.4417 13 6 3.2181 -3.0356 -1.4411 14 7 3.4629 -3.4588 -2.8221 15 6 4.1256 -4.6065 -3.0679 16 8 4.5207 -5.2903 -2.1433 17 6 4.3716 -5.0328 -4.4585 18 6 5.0320 -6.1656 -4.8414 19 7 5.0346 -6.1794 -6.1894 20 6 5.6274 -7.2052 -7.0512 21 6 4.5671 -7.7322 -8.0202 22 1 3.7027 -8.1065 -7.4718 23 6 5.1613 -8.8408 -8.9229 24 6 4.5325 -8.5097 -10.3003 25 8 4.5163 -7.0662 -10.3249 26 6 4.1427 -6.6280 -9.0078 27 7 4.3654 -5.0207 -6.6081 28 7 3.9889 -4.3696 -5.5630 29 1 -0.3634 -0.0780 1.0247 30 1 -0.3634 0.9263 -0.4449 31 1 -0.3632 -0.8485 -0.5799 32 1 5.0205 2.3193 0.9332 33 1 1.6084 -2.0282 0.5147 34 1 3.1499 -1.1380 0.5144 35 1 3.0417 -0.9515 -1.9558 36 1 1.5002 -1.8415 -1.9555 37 1 2.6294 -3.7953 -0.9268 38 1 4.1706 -2.9046 -0.9274 39 1 3.1475 -2.9135 -3.5596 40 1 5.4665 -6.9088 -4.1892 41 1 6.4529 -6.7723 -7.6162 42 1 5.9982 -8.0257 -6.4370 43 1 6.2481 -8.7681 -8.9639 44 1 4.8514 -9.8284 -8.5811 45 1 3.5191 -8.9059 -10.3649 46 1 5.1485 -8.9004 -11.1101 47 1 3.0637 -6.4813 -8.9582 48 1 4.6548 -5.6969 -8.7654 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731274264.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:32 Heat of formation + Delta-G solvation = 39.828985 kcal Electronic energy + Delta-G solvation = -28272.736871 eV Core-core repulsion = 24172.991524 eV Total energy + Delta-G solvation = -4099.745347 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.53608 -40.04546 -39.27488 -36.46639 -35.75967 -34.74368 -32.82057 -31.86080 -31.37710 -30.63176 -29.79004 -27.18546 -26.39631 -25.51530 -23.62268 -23.33442 -22.43733 -21.64755 -21.35865 -20.80579 -20.25064 -18.28880 -17.19029 -16.87576 -16.74604 -16.35984 -16.09867 -15.84352 -15.58223 -15.44551 -15.01023 -14.90138 -14.38832 -14.20191 -13.90904 -13.66910 -13.41726 -13.27704 -13.18484 -12.68934 -12.59697 -12.26716 -12.12421 -12.01631 -11.87690 -11.67945 -11.53189 -11.44352 -11.32511 -11.15030 -10.88502 -10.71695 -10.50663 -10.38690 -10.18703 -10.09214 -9.74536 -9.58533 -9.50500 -8.89554 -8.48550 -6.79496 -5.98095 -3.39132 0.81740 1.52877 1.59954 3.17539 3.25294 3.34371 3.34925 3.49595 3.55542 3.65230 3.71290 3.90648 4.06393 4.32126 4.43315 4.47768 4.54115 4.54970 4.58898 4.70823 4.85783 4.96187 4.99234 5.09559 5.12826 5.22167 5.31733 5.37643 5.44391 5.52739 5.56718 5.70324 5.88680 5.96492 6.08121 6.17999 6.31244 6.32290 6.37130 6.52219 6.66174 6.73947 6.80663 6.97839 7.48049 7.74998 8.07693 8.20995 8.39978 9.00920 9.73216 10.14684 11.17473 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023895 B = 0.001815 C = 0.001779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.530750 B =15425.299406 C =15739.105020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.612 5.612 3 C -0.271 4.271 4 H 0.078 0.922 5 C 0.036 3.964 6 N -0.898 5.898 7 Si 0.876 3.124 8 H -0.283 1.283 9 H -0.301 1.301 10 H -0.270 1.270 11 C 0.143 3.857 12 C -0.147 4.147 13 C 0.118 3.882 14 N -0.707 5.707 15 C 0.599 3.401 16 O -0.544 6.544 17 C -0.096 4.096 18 C 0.094 3.906 19 N -0.365 5.365 20 C 0.130 3.870 21 C -0.138 4.138 22 H 0.093 0.907 23 C -0.147 4.147 24 C 0.045 3.955 25 O -0.376 6.376 26 C 0.050 3.950 27 N -0.065 5.065 28 N -0.199 5.199 29 H 0.006 0.994 30 H 0.045 0.955 31 H 0.027 0.973 32 H 0.263 0.737 33 H 0.040 0.960 34 H 0.055 0.945 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.409 0.591 40 H 0.205 0.795 41 H 0.104 0.896 42 H 0.110 0.890 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.062 0.938 46 H 0.096 0.904 47 H 0.063 0.937 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.607 -26.856 -19.098 33.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.336 5.336 3 C -0.400 4.400 4 H 0.095 0.905 5 C -0.165 4.165 6 N -0.539 5.539 7 Si 0.706 3.294 8 H -0.211 1.211 9 H -0.229 1.229 10 H -0.195 1.195 11 C 0.016 3.984 12 C -0.187 4.187 13 C -0.005 4.005 14 N -0.357 5.357 15 C 0.383 3.617 16 O -0.421 6.421 17 C -0.235 4.235 18 C -0.063 4.063 19 N -0.150 5.150 20 C 0.009 3.991 21 C -0.157 4.157 22 H 0.111 0.889 23 C -0.185 4.185 24 C -0.031 4.031 25 O -0.295 6.295 26 C -0.027 4.027 27 N -0.045 5.045 28 N -0.073 5.073 29 H 0.024 0.976 30 H 0.063 0.937 31 H 0.045 0.955 32 H 0.073 0.927 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.244 0.756 40 H 0.222 0.778 41 H 0.122 0.878 42 H 0.128 0.872 43 H 0.103 0.897 44 H 0.106 0.894 45 H 0.080 0.920 46 H 0.114 0.886 47 H 0.081 0.919 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.588 -26.271 -19.761 32.975 hybrid contribution 0.532 -1.158 1.478 1.952 sum 3.120 -27.429 -18.283 33.111 Atomic orbital electron populations 1.21081 0.84570 0.99044 0.97377 1.44031 1.00796 1.01966 1.86773 1.18789 1.06112 0.90842 1.24244 0.90454 1.25484 0.96820 0.96459 0.97714 1.69883 1.08422 1.36219 1.39407 0.86938 0.78014 0.80086 0.84351 1.21136 1.22884 1.19461 1.21033 0.96542 0.87834 0.92960 1.22404 0.99732 0.94570 1.02040 1.21548 1.00819 0.97016 0.81142 1.45924 1.56460 1.22968 1.10318 1.16772 0.78279 0.81432 0.85225 1.90806 1.52462 1.54738 1.44116 1.21570 1.10177 0.97141 0.94658 1.23390 0.98344 0.99772 0.84786 1.50529 1.39915 1.19047 1.05522 1.22163 0.95858 0.88450 0.92625 1.22907 0.98741 0.96998 0.97062 0.88866 1.23167 1.01798 0.98427 0.95112 1.23559 1.00450 0.81985 0.97155 1.88930 1.90430 1.19903 1.30248 1.23369 1.00754 0.97566 0.80966 1.81925 1.12875 0.92521 1.17203 1.74678 1.13977 1.22234 0.96402 0.97575 0.93655 0.95464 0.92708 0.94110 0.92716 0.90378 0.92069 0.91564 0.91255 0.75553 0.77825 0.87769 0.87156 0.89704 0.89426 0.91995 0.88593 0.91873 0.87957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.50 10.70 59.85 0.64 3.14 16 2 N -0.61 -14.66 2.47 -181.12 -0.45 -15.11 16 3 C -0.27 -7.64 9.88 -15.06 -0.15 -7.79 16 4 H 0.08 2.34 8.06 -52.48 -0.42 1.92 16 5 C 0.04 1.04 5.29 -17.43 -0.09 0.95 16 6 N -0.90 -27.52 13.97 55.49 0.78 -26.75 16 7 Si 0.88 22.43 25.10 -169.99 -4.27 18.16 16 8 H -0.28 -7.02 6.68 56.52 0.38 -6.64 16 9 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 10 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 11 C 0.14 3.05 4.53 -4.05 -0.02 3.03 16 12 C -0.15 -2.66 5.65 -26.73 -0.15 -2.81 16 13 C 0.12 1.93 5.67 -4.04 -0.02 1.90 16 14 N -0.71 -10.49 5.55 -61.35 -0.34 -10.83 16 15 C 0.60 8.93 7.82 -12.48 -0.10 8.83 16 16 O -0.54 -9.35 16.86 5.28 0.09 -9.26 16 17 C -0.10 -1.20 6.99 -83.55 -0.58 -1.78 16 18 C 0.09 0.83 11.27 -16.84 -0.19 0.64 16 19 N -0.37 -2.89 3.69 -61.06 -0.23 -3.11 16 20 C 0.13 0.51 5.73 -4.04 -0.02 0.48 16 21 C -0.14 -0.60 3.30 -89.09 -0.29 -0.89 16 22 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 23 C -0.15 -0.39 6.71 -24.72 -0.17 -0.55 16 24 C 0.05 0.21 7.72 38.21 0.29 0.50 16 25 O -0.38 -3.13 11.52 -35.23 -0.41 -3.54 16 26 C 0.05 0.37 6.59 37.73 0.25 0.62 16 27 N -0.07 -0.73 11.46 60.35 0.69 -0.04 16 28 N -0.20 -2.60 12.04 32.85 0.40 -2.21 16 29 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 30 H 0.04 0.89 8.00 -51.93 -0.42 0.48 16 31 H 0.03 0.47 8.10 -51.93 -0.42 0.05 16 32 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 33 H 0.04 0.78 8.07 -51.93 -0.42 0.36 16 34 H 0.05 1.29 3.38 -51.93 -0.18 1.12 16 35 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 39 H 0.41 5.62 8.16 -40.82 -0.33 5.29 16 40 H 0.21 1.16 8.06 -52.48 -0.42 0.73 16 41 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.11 0.10 8.08 -51.93 -0.42 -0.32 16 43 H 0.08 0.15 7.87 -51.93 -0.41 -0.26 16 44 H 0.09 0.11 8.14 -51.93 -0.42 -0.32 16 45 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 46 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.10 0.88 6.21 -51.93 -0.32 0.55 16 LS Contribution 393.27 15.07 5.93 5.93 Total: -1.00 -35.46 393.27 -5.98 -41.44 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -7.57 Total: -0.96 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: -0.60 Total: 6.27 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: 0.85 Total: -58.04 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: -0.32 Total: -12.80 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.27 Total: 18.16 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.46 -5.98 -41.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731274264.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.268 kcal (2) G-P(sol) polarization free energy of solvation -35.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds