Wall clock time and date at job start Tue Mar 31 2020 21:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36935 * 119.99538 * 2 1 4 4 H 1.08003 * 120.00269 * 322.03252 * 3 2 1 5 5 C 1.38817 * 119.99902 * 142.03255 * 3 2 1 6 6 N 1.31616 * 120.00109 * 157.01776 * 5 3 2 7 7 Si 1.86794 * 119.99896 * 337.02243 * 5 3 2 8 8 H 1.48504 * 109.47307 * 95.67830 * 7 5 3 9 9 H 1.48499 * 109.47143 * 215.67884 * 7 5 3 10 10 H 1.48505 * 109.47301 * 335.67902 * 7 5 3 11 11 C 1.46495 * 119.99998 * 179.97438 * 2 1 3 12 12 C 1.52997 * 109.47199 * 90.00390 * 11 2 1 13 13 C 1.52999 * 109.47244 * 179.97438 * 12 11 2 14 14 N 1.46500 * 109.47263 * 180.02562 * 13 12 11 15 15 C 1.34779 * 119.99999 * 180.02562 * 14 13 12 16 16 O 1.21596 * 120.00064 * 359.97438 * 15 14 13 17 17 C 1.47517 * 119.99849 * 179.97438 * 15 14 13 18 18 C 1.36600 * 125.77182 * 179.71446 * 17 15 14 19 19 N 1.34807 * 106.84126 * 179.89646 * 18 17 15 20 20 C 1.46507 * 126.59604 * 180.13031 * 19 18 17 21 21 C 1.52998 * 109.47001 * 125.24443 * 20 19 18 22 22 H 1.08995 * 110.43899 * 303.91130 * 21 20 19 23 23 C 1.54812 * 110.48539 * 181.22185 * 21 20 19 24 24 C 1.54997 * 102.09307 * 220.44581 * 23 21 20 25 25 O 1.44380 * 103.48913 * 37.02372 * 24 23 21 26 26 C 1.43746 * 106.97859 * 319.94200 * 25 24 23 27 27 N 1.40207 * 106.81163 * 0.35857 * 19 18 17 28 28 N 1.28761 * 108.36736 * 359.77164 * 27 19 18 29 29 H 1.08999 * 109.47348 * 265.64641 * 1 2 3 30 30 H 1.08997 * 109.47288 * 25.65700 * 1 2 3 31 31 H 1.09005 * 109.46419 * 145.64980 * 1 2 3 32 32 H 0.97001 * 120.00292 * 180.02562 * 6 5 3 33 33 H 1.09004 * 109.47325 * 330.00136 * 11 2 1 34 34 H 1.09006 * 109.46637 * 210.00412 * 11 2 1 35 35 H 1.09002 * 109.47193 * 60.00216 * 12 11 2 36 36 H 1.08997 * 109.47098 * 300.00135 * 12 11 2 37 37 H 1.09004 * 109.47098 * 59.99858 * 13 12 11 38 38 H 1.09006 * 109.46820 * 300.00161 * 13 12 11 39 39 H 0.96993 * 119.99782 * 359.97438 * 14 13 12 40 40 H 1.08006 * 126.57531 * 0.04280 * 18 17 15 41 41 H 1.09000 * 109.47081 * 245.24719 * 20 19 18 42 42 H 1.08998 * 109.46498 * 5.24884 * 20 19 18 43 43 H 1.09000 * 110.90766 * 338.63960 * 23 21 20 44 44 H 1.09003 * 110.90605 * 102.24749 * 23 21 20 45 45 H 1.09001 * 110.61904 * 278.52667 * 24 23 21 46 46 H 1.08997 * 110.75503 * 155.58586 * 24 23 21 47 47 H 1.09005 * 109.87817 * 267.09305 * 26 25 24 48 48 H 1.08997 * 110.00447 * 146.01219 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 1.7810 2.0223 -0.5754 5 6 3.3174 1.3132 0.7396 6 7 4.2043 2.2305 0.4166 7 14 3.6302 0.1825 2.1932 8 1 4.4679 -0.9637 1.7575 9 1 4.3365 0.9339 3.2617 10 1 2.3349 -0.3216 2.7160 11 6 2.1975 -1.2687 0.0006 12 6 2.4526 -1.7110 -1.4417 13 6 3.2181 -3.0356 -1.4411 14 7 3.4629 -3.4588 -2.8221 15 6 4.1256 -4.6065 -3.0679 16 8 4.5207 -5.2903 -2.1433 17 6 4.3716 -5.0328 -4.4585 18 6 5.0320 -6.1656 -4.8414 19 7 5.0346 -6.1794 -6.1894 20 6 5.6274 -7.2052 -7.0512 21 6 4.5671 -7.7322 -8.0202 22 1 3.7027 -8.1065 -7.4718 23 6 5.1613 -8.8408 -8.9229 24 6 4.5325 -8.5097 -10.3003 25 8 4.5163 -7.0662 -10.3249 26 6 4.1427 -6.6280 -9.0078 27 7 4.3654 -5.0207 -6.6081 28 7 3.9889 -4.3696 -5.5630 29 1 -0.3634 -0.0780 1.0247 30 1 -0.3634 0.9263 -0.4449 31 1 -0.3632 -0.8485 -0.5799 32 1 5.0205 2.3193 0.9332 33 1 1.6084 -2.0282 0.5147 34 1 3.1499 -1.1380 0.5144 35 1 3.0417 -0.9515 -1.9558 36 1 1.5002 -1.8415 -1.9555 37 1 2.6294 -3.7953 -0.9268 38 1 4.1706 -2.9046 -0.9274 39 1 3.1475 -2.9135 -3.5596 40 1 5.4665 -6.9088 -4.1892 41 1 6.4529 -6.7723 -7.6162 42 1 5.9982 -8.0257 -6.4370 43 1 6.2481 -8.7681 -8.9639 44 1 4.8514 -9.8284 -8.5811 45 1 3.5191 -8.9059 -10.3649 46 1 5.1485 -8.9004 -11.1101 47 1 3.0637 -6.4813 -8.9582 48 1 4.6548 -5.6969 -8.7654 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731274264.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:31 Heat of formation + Delta-G solvation = 12.555564 kcal Electronic energy + Delta-G solvation = -28273.919536 eV Core-core repulsion = 24172.991524 eV Total energy + Delta-G solvation = -4100.928011 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.30626 -40.61337 -40.31550 -38.17849 -36.36731 -36.12628 -33.86355 -33.35769 -32.61389 -31.70320 -30.33094 -28.16964 -27.72455 -27.08075 -24.67435 -23.94753 -23.23165 -22.88609 -22.47963 -21.89691 -21.24619 -19.17018 -18.72502 -17.64722 -17.45473 -17.32678 -17.12985 -17.07435 -16.77614 -16.35479 -15.97897 -15.76635 -15.69340 -15.28330 -15.08244 -14.80580 -14.67116 -14.48246 -14.16252 -14.00032 -13.78715 -13.36481 -13.18470 -12.94453 -12.71094 -12.69329 -12.65982 -12.51758 -12.37082 -12.34503 -12.15871 -11.99659 -11.82910 -11.74173 -11.37425 -11.32913 -11.30031 -10.68968 -10.62463 -10.46302 -10.07356 -8.75996 -8.20645 -5.58324 0.11358 0.57586 1.03446 1.31674 1.41567 1.53020 2.08798 2.20347 2.42305 2.94849 3.03341 3.14941 3.22968 3.39853 3.43700 3.67432 3.73828 3.91544 3.94917 4.06727 4.16157 4.17241 4.23458 4.30913 4.40839 4.45367 4.48484 4.55331 4.63827 4.71956 4.77654 4.78460 4.78923 4.84122 4.91435 4.97711 5.03783 5.11559 5.14841 5.23771 5.31838 5.40468 5.43369 5.88847 5.94717 6.16657 6.38429 6.86782 6.99685 7.08508 7.63738 8.05786 8.99089 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023895 B = 0.001815 C = 0.001779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.530750 B =15425.299406 C =15739.105020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.626 5.626 3 C -0.262 4.262 4 H 0.040 0.960 5 C -0.020 4.020 6 N -0.947 5.947 7 Si 0.941 3.059 8 H -0.272 1.272 9 H -0.308 1.308 10 H -0.259 1.259 11 C 0.135 3.865 12 C -0.130 4.130 13 C 0.129 3.871 14 N -0.708 5.708 15 C 0.602 3.398 16 O -0.570 6.570 17 C -0.126 4.126 18 C 0.118 3.882 19 N -0.350 5.350 20 C 0.121 3.879 21 C -0.131 4.131 22 H 0.094 0.906 23 C -0.134 4.134 24 C 0.033 3.967 25 O -0.406 6.406 26 C 0.047 3.953 27 N -0.085 5.085 28 N -0.226 5.226 29 H 0.015 0.985 30 H 0.039 0.961 31 H 0.061 0.939 32 H 0.263 0.737 33 H 0.072 0.928 34 H 0.032 0.968 35 H 0.048 0.952 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.052 0.948 39 H 0.413 0.587 40 H 0.241 0.759 41 H 0.113 0.887 42 H 0.155 0.845 43 H 0.099 0.901 44 H 0.110 0.890 45 H 0.063 0.937 46 H 0.108 0.892 47 H 0.046 0.954 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.785 -30.983 -19.007 36.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.351 5.351 3 C -0.392 4.392 4 H 0.058 0.942 5 C -0.216 4.216 6 N -0.590 5.590 7 Si 0.769 3.231 8 H -0.199 1.199 9 H -0.236 1.236 10 H -0.183 1.183 11 C 0.010 3.990 12 C -0.170 4.170 13 C 0.005 3.995 14 N -0.358 5.358 15 C 0.387 3.613 16 O -0.449 6.449 17 C -0.266 4.266 18 C -0.040 4.040 19 N -0.134 5.134 20 C 0.002 3.998 21 C -0.150 4.150 22 H 0.113 0.887 23 C -0.172 4.172 24 C -0.043 4.043 25 O -0.326 6.326 26 C -0.030 4.030 27 N -0.065 5.065 28 N -0.100 5.100 29 H 0.033 0.967 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.050 0.950 35 H 0.067 0.933 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.071 0.929 39 H 0.249 0.751 40 H 0.258 0.742 41 H 0.131 0.869 42 H 0.172 0.828 43 H 0.118 0.882 44 H 0.129 0.871 45 H 0.082 0.918 46 H 0.126 0.874 47 H 0.064 0.936 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.735 -30.437 -19.719 36.369 hybrid contribution 0.427 0.078 1.256 1.329 sum 3.162 -30.359 -18.463 35.673 Atomic orbital electron populations 1.21206 0.82169 1.00385 0.98472 1.44188 1.02408 1.01416 1.87068 1.18682 1.06017 0.91646 1.22815 0.94209 1.26090 0.96877 0.98499 1.00157 1.70007 1.09253 1.38973 1.40817 0.85891 0.78317 0.78394 0.80479 1.19865 1.23641 1.18293 1.21151 0.95732 0.87382 0.94767 1.22128 1.00415 0.94622 0.99882 1.21310 0.99865 0.96314 0.82054 1.45856 1.56777 1.23349 1.09801 1.17019 0.77384 0.80802 0.86101 1.90779 1.53525 1.55409 1.45176 1.21417 1.12727 0.99009 0.93410 1.23875 0.96146 0.98788 0.85213 1.50801 1.38388 1.18469 1.05768 1.22658 0.95523 0.88631 0.92953 1.22850 0.99151 0.96401 0.96610 0.88737 1.23155 1.02422 0.98632 0.92976 1.23827 1.01219 0.80129 0.99109 1.88897 1.90492 1.22323 1.30890 1.23316 0.99561 0.98242 0.81847 1.81879 1.13801 0.93912 1.16939 1.74655 1.15028 1.23377 0.96917 0.96652 0.94169 0.92019 0.92834 0.90973 0.95018 0.93306 0.90191 0.90121 0.92931 0.75074 0.74246 0.86924 0.82756 0.88244 0.87138 0.91848 0.87375 0.93567 0.89707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.64 10.70 127.77 1.37 6.01 16 2 N -0.63 -29.36 2.47 -726.93 -1.79 -31.16 16 3 C -0.26 -15.00 9.88 84.04 0.83 -14.17 16 4 H 0.04 2.53 8.06 -2.91 -0.02 2.51 16 5 C -0.02 -1.15 5.29 84.86 0.45 -0.70 16 6 N -0.95 -59.87 13.97 21.65 0.30 -59.57 16 7 Si 0.94 46.71 25.10 68.60 1.72 48.43 16 8 H -0.27 -12.84 6.68 99.48 0.66 -12.18 16 9 H -0.31 -15.48 7.11 99.48 0.71 -14.78 16 10 H -0.26 -12.25 7.11 99.48 0.71 -11.54 16 11 C 0.14 5.53 4.53 86.38 0.39 5.92 16 12 C -0.13 -4.58 5.65 30.59 0.17 -4.41 16 13 C 0.13 4.04 5.67 86.38 0.49 4.53 16 14 N -0.71 -20.58 5.55 -466.27 -2.59 -23.17 16 15 C 0.60 17.35 7.82 86.69 0.68 18.03 16 16 O -0.57 -18.79 16.86 -4.02 -0.07 -18.86 16 17 C -0.13 -2.99 6.99 40.82 0.29 -2.70 16 18 C 0.12 1.75 11.27 83.85 0.95 2.69 16 19 N -0.35 -4.70 3.69 -347.08 -1.28 -5.98 16 20 C 0.12 0.52 5.73 86.38 0.49 1.01 16 21 C -0.13 -0.82 3.30 -9.80 -0.03 -0.85 16 22 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 23 C -0.13 -0.26 6.71 31.90 0.21 -0.04 16 24 C 0.03 0.25 7.72 72.67 0.56 0.81 16 25 O -0.41 -6.68 11.52 -148.98 -1.72 -8.39 16 26 C 0.05 0.68 6.59 72.35 0.48 1.16 16 27 N -0.09 -1.87 11.46 37.02 0.42 -1.45 16 28 N -0.23 -5.87 12.04 -50.00 -0.60 -6.47 16 29 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.04 1.54 8.00 -2.39 -0.02 1.52 16 31 H 0.06 1.92 8.10 -2.38 -0.02 1.90 16 32 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 33 H 0.07 2.51 8.07 -2.39 -0.02 2.49 16 34 H 0.03 1.45 3.38 -2.38 -0.01 1.44 16 35 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 37 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 39 H 0.41 11.32 8.16 -92.71 -0.76 10.57 16 40 H 0.24 1.65 8.06 -2.91 -0.02 1.62 16 41 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 42 H 0.15 -0.60 8.08 -2.39 -0.02 -0.62 16 43 H 0.10 -0.06 7.87 -2.39 -0.02 -0.08 16 44 H 0.11 -0.23 8.14 -2.39 -0.02 -0.24 16 45 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 46 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 47 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 48 H 0.08 1.49 6.21 -2.39 -0.01 1.48 16 Total: -1.00 -80.40 393.27 1.89 -78.50 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: 0.17 Total: 10.83 kcal Atomic # 6 Polarization: 9.96 SS G_CDS: 7.32 Total: 17.28 kcal Atomic # 7 Polarization: -122.25 SS G_CDS: -5.54 Total: -127.79 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -1.78 Total: -27.25 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 1.72 Total: 48.43 kcal Total: -80.40 1.89 -78.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731274264.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.059 kcal (2) G-P(sol) polarization free energy of solvation -80.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds