Wall clock time and date at job start Tue Mar 31 2020 20:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46897 * 109.47165 * 2 1 4 4 C 1.46904 * 111.00228 * 76.12037 * 3 2 1 5 5 C 1.52995 * 109.47310 * 199.51478 * 4 3 2 6 6 N 1.46501 * 109.47046 * 174.89549 * 5 4 3 7 7 C 1.34781 * 119.99997 * 180.02562 * 6 5 4 8 8 O 1.21681 * 120.00036 * 5.08326 * 7 6 5 9 9 C 1.46759 * 120.00051 * 185.08346 * 7 6 5 10 10 C 1.36666 * 126.84682 * 5.02095 * 9 7 6 11 11 N 1.33318 * 107.79158 * 180.02562 * 10 9 7 12 12 C 1.30859 * 109.67923 * 359.72257 * 11 10 9 13 13 C 1.50707 * 125.41834 * 180.27130 * 12 11 10 14 14 N 1.34492 * 109.16628 * 0.45121 * 12 11 10 15 15 C 1.46498 * 126.47580 * 179.82174 * 14 12 11 16 16 C 1.46899 * 111.00226 * 200.07258 * 3 2 1 17 17 C 1.50704 * 109.46825 * 66.04908 * 16 3 2 18 18 O 1.21296 * 120.00078 * 359.97438 * 17 16 3 19 19 N 1.34773 * 119.99941 * 179.97438 * 17 16 3 20 20 C 1.37107 * 119.99782 * 179.97438 * 19 17 16 21 21 H 1.07999 * 120.00007 * 359.97438 * 20 19 17 22 22 C 1.38944 * 119.99643 * 180.02562 * 20 19 17 23 23 N 1.31412 * 120.00452 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99791 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46916 * 60.00432 * 24 22 20 26 26 H 1.48504 * 109.47190 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47335 * 299.99980 * 24 22 20 28 28 H 1.08999 * 109.46640 * 184.88476 * 1 2 3 29 29 H 1.08991 * 109.47318 * 304.88694 * 1 2 3 30 30 H 1.08997 * 109.46687 * 64.88702 * 1 2 3 31 31 H 1.08998 * 109.47605 * 239.99749 * 2 1 3 32 32 H 1.08997 * 109.47048 * 119.99934 * 2 1 3 33 33 H 1.09004 * 109.47177 * 79.51100 * 4 3 2 34 34 H 1.09001 * 109.47177 * 319.51884 * 4 3 2 35 35 H 1.08997 * 109.47325 * 54.89933 * 5 4 3 36 36 H 1.08997 * 109.47389 * 294.89774 * 5 4 3 37 37 H 0.97001 * 119.99914 * 0.02562 * 6 5 4 38 38 H 1.08000 * 126.10575 * 0.02562 * 10 9 7 39 39 H 1.08995 * 109.47276 * 270.21204 * 13 12 11 40 40 H 1.09000 * 109.46323 * 30.20545 * 13 12 11 41 41 H 1.09000 * 109.47234 * 150.20610 * 13 12 11 42 42 H 1.09004 * 109.47491 * 264.45194 * 15 14 12 43 43 H 1.08999 * 109.47241 * 144.44617 * 15 14 12 44 44 H 1.08998 * 109.46956 * 24.44713 * 15 14 12 45 45 H 1.08997 * 109.47299 * 186.04015 * 16 3 2 46 46 H 1.08997 * 109.47382 * 306.04830 * 16 3 2 47 47 H 0.96996 * 120.00578 * 359.97438 * 19 17 16 48 48 H 0.97003 * 120.00560 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8850 1.9910 1.3314 5 6 1.9306 3.5151 1.2050 6 7 1.6747 4.1215 2.5139 7 6 1.6654 5.4629 2.6449 8 8 1.7772 6.1710 1.6617 9 6 1.5205 6.0694 3.9734 10 6 1.4813 5.4157 5.1729 11 7 1.3397 6.3314 6.1314 12 6 1.2940 7.5251 5.5972 13 6 1.1461 8.8175 6.3582 14 7 1.3960 7.4149 4.2607 15 6 1.3838 8.5145 3.2927 16 6 3.4096 1.4520 -0.4707 17 6 3.4683 1.0510 -1.9222 18 8 2.4522 0.7396 -2.5069 19 7 4.6497 1.0385 -2.5707 20 6 4.7031 0.6732 -3.8911 21 1 3.7985 0.3951 -4.4114 22 6 5.9211 0.6597 -4.5594 23 7 7.0219 0.9976 -3.9262 24 14 5.9940 0.1614 -6.3582 25 1 5.1539 1.0850 -7.1622 26 1 7.3990 0.2299 -6.8344 27 1 5.4871 -1.2263 -6.5084 28 1 -0.3632 -1.0239 0.0875 29 1 -0.3633 0.5877 0.8429 30 1 -0.3632 0.4361 -0.9305 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.7032 1.6546 1.9682 34 1 0.9345 1.6912 1.7726 35 1 1.1696 3.8439 0.4973 36 1 2.9142 3.8209 0.8489 37 1 1.5120 3.5576 3.2862 38 1 1.5523 4.3479 5.3184 39 1 0.0881 9.0544 6.4698 40 1 1.6009 8.7131 7.3432 41 1 1.6424 9.6197 5.8120 42 1 0.3731 8.6477 2.9068 43 1 2.0593 8.2815 2.4696 44 1 1.7099 9.4325 3.7815 45 1 3.7821 2.4703 -0.3598 46 1 4.0260 0.7734 0.1189 47 1 5.4622 1.2878 -2.1033 48 1 7.8724 0.9879 -4.3926 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731809710.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:31 Heat of formation + Delta-G solvation = -4.403048 kcal Electronic energy + Delta-G solvation = -28572.766053 eV Core-core repulsion = 24471.102661 eV Total energy + Delta-G solvation = -4101.663392 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.60761 -39.58552 -38.72182 -36.90483 -35.11232 -34.24422 -33.80610 -32.39455 -31.35319 -30.86069 -29.55968 -27.94615 -27.16403 -26.06441 -24.26431 -23.39583 -22.40035 -21.10524 -20.67743 -20.02722 -19.16097 -18.07656 -17.84782 -16.61675 -16.56612 -16.21423 -15.95470 -15.59144 -15.01388 -14.84105 -14.64268 -14.28590 -14.14967 -13.93366 -13.81027 -13.72585 -13.68614 -13.48058 -13.24932 -13.12564 -12.79919 -12.71597 -12.40702 -12.18131 -11.75066 -11.58805 -11.47503 -11.46155 -11.09636 -10.81977 -10.72493 -10.50900 -10.42553 -10.20152 -10.12188 -10.05440 -9.44684 -9.30516 -8.77839 -8.43074 -7.98677 -7.91160 -6.40207 -3.81018 0.98652 2.09774 2.45769 2.98800 3.08987 3.21052 3.26720 3.31100 3.90932 3.93788 4.01613 4.23778 4.33107 4.39013 4.58172 4.79548 4.80164 4.89711 4.98036 5.02808 5.07352 5.12232 5.20705 5.26041 5.34939 5.37916 5.42546 5.57584 5.76741 5.78002 5.81712 5.86330 5.89179 5.96015 6.09054 6.11802 6.21889 6.28864 6.45937 6.56535 6.65429 7.18702 7.25090 7.34853 7.55187 7.56349 7.93867 8.07404 8.63019 9.19374 9.55826 10.07472 10.77442 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016085 B = 0.002017 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.288936 B =13879.743880 C =15014.520607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.053 3.947 3 N -0.512 5.512 4 C 0.043 3.957 5 C 0.124 3.876 6 N -0.715 5.715 7 C 0.594 3.406 8 O -0.540 6.540 9 C -0.087 4.087 10 C 0.039 3.961 11 N -0.494 5.494 12 C 0.225 3.775 13 C -0.072 4.072 14 N -0.423 5.423 15 C 0.066 3.934 16 C 0.042 3.958 17 C 0.443 3.557 18 O -0.576 6.576 19 N -0.564 5.564 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.274 1.274 28 H 0.051 0.949 29 H 0.045 0.955 30 H 0.066 0.934 31 H 0.097 0.903 32 H 0.023 0.977 33 H 0.041 0.959 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.401 0.599 38 H 0.179 0.821 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.104 0.896 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.049 0.951 47 H 0.392 0.608 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.844 11.481 21.383 26.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.074 4.074 3 N -0.236 5.236 4 C -0.086 4.086 5 C 0.001 3.999 6 N -0.366 5.366 7 C 0.380 3.620 8 O -0.418 6.418 9 C -0.203 4.203 10 C -0.116 4.116 11 N -0.213 5.213 12 C -0.037 4.037 13 C -0.130 4.130 14 N -0.104 5.104 15 C -0.076 4.076 16 C -0.089 4.089 17 C 0.229 3.771 18 O -0.460 6.460 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.116 0.884 32 H 0.041 0.959 33 H 0.059 0.941 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.090 0.910 37 H 0.235 0.765 38 H 0.196 0.804 39 H 0.103 0.897 40 H 0.113 0.887 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.123 0.877 44 H 0.107 0.893 45 H 0.107 0.893 46 H 0.067 0.933 47 H 0.225 0.775 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.571 12.034 20.535 26.043 hybrid contribution 1.211 -0.651 -0.564 1.486 sum -9.361 11.383 19.971 24.820 Atomic orbital electron populations 1.21694 0.95245 1.00512 1.02209 1.22166 0.96024 0.87821 1.01410 1.61417 1.20105 1.19678 1.22440 1.22255 1.01697 0.93383 0.91235 1.21404 1.02861 0.92336 0.83313 1.45537 1.72813 1.05624 1.12672 1.16703 0.76782 0.82410 0.86102 1.90830 1.50327 1.61365 1.39328 1.20742 1.18988 0.84337 0.96273 1.22628 1.02356 0.99552 0.87021 1.70108 1.20864 0.97931 1.32435 1.23457 1.02985 0.97003 0.80212 1.20290 1.03735 0.89018 0.99953 1.45088 1.51186 1.06410 1.07688 1.22298 1.05029 0.87502 0.92784 1.21949 0.88930 1.01931 0.96103 1.19699 0.84577 0.84962 0.87905 1.90510 1.33972 1.53196 1.68294 1.41867 1.07475 1.59423 1.11334 1.19641 0.95123 1.41995 0.86037 0.87955 1.25258 0.94815 0.97505 1.00398 1.69603 0.98725 1.48377 1.37639 0.85920 0.77029 0.79242 0.82037 1.19896 1.21018 1.19944 0.92959 0.93625 0.91532 0.88438 0.95885 0.94119 0.90042 0.89825 0.91000 0.76468 0.80383 0.89664 0.88701 0.90472 0.89972 0.87730 0.89318 0.89316 0.93331 0.77520 0.91844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 10.07 37.16 0.37 -1.50 16 2 C 0.05 0.82 5.18 -3.82 -0.02 0.80 16 3 N -0.51 -8.05 4.10 -236.07 -0.97 -9.02 16 4 C 0.04 0.49 4.92 -3.82 -0.02 0.48 16 5 C 0.12 1.51 5.71 -4.04 -0.02 1.49 16 6 N -0.71 -7.18 5.53 -61.60 -0.34 -7.52 16 7 C 0.59 7.31 7.78 -12.82 -0.10 7.22 16 8 O -0.54 -8.45 14.99 5.21 0.08 -8.37 16 9 C -0.09 -0.95 6.91 -82.14 -0.57 -1.52 16 10 C 0.04 0.39 11.36 -17.47 -0.20 0.19 16 11 N -0.49 -5.42 11.20 -10.58 -0.12 -5.54 16 12 C 0.23 2.07 7.88 -155.61 -1.23 0.84 16 13 C -0.07 -0.34 10.17 36.01 0.37 0.03 16 14 N -0.42 -4.14 3.17 -117.27 -0.37 -4.51 16 15 C 0.07 0.48 10.45 59.85 0.63 1.10 16 16 C 0.04 0.73 5.28 -4.97 -0.03 0.71 16 17 C 0.44 10.32 7.29 -10.98 -0.08 10.24 16 18 O -0.58 -15.21 14.12 5.54 0.08 -15.14 16 19 N -0.56 -14.24 5.29 -10.96 -0.06 -14.30 16 20 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 21 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.62 13.05 55.50 0.72 -23.89 16 24 Si 0.93 21.15 29.55 -169.99 -5.02 16.12 16 25 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.04 0.53 6.68 -51.93 -0.35 0.18 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.10 1.86 5.85 -51.93 -0.30 1.56 16 32 H 0.02 0.31 7.99 -51.93 -0.42 -0.11 16 33 H 0.04 0.42 8.00 -51.93 -0.42 0.00 16 34 H 0.08 0.81 6.47 -51.93 -0.34 0.47 16 35 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.07 0.97 6.95 -51.93 -0.36 0.61 16 37 H 0.40 2.77 7.46 -40.82 -0.30 2.47 16 38 H 0.18 1.17 7.50 -52.49 -0.39 0.78 16 39 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 40 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 0.22 6.95 -51.93 -0.36 -0.14 16 42 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.10 0.97 6.69 -51.93 -0.35 0.62 16 44 H 0.09 0.36 6.86 -51.93 -0.36 0.00 16 45 H 0.09 1.44 6.70 -51.93 -0.35 1.09 16 46 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 47 H 0.39 9.50 7.90 -40.82 -0.32 9.17 16 48 H 0.27 7.04 8.31 -40.82 -0.34 6.71 16 LS Contribution 394.96 15.07 5.95 5.95 Total: -1.00 -35.40 394.96 -8.26 -43.66 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -7.08 Total: 10.43 kcal Atomic # 6 Polarization: 13.24 SS G_CDS: -1.13 Total: 12.11 kcal Atomic # 7 Polarization: -63.65 SS G_CDS: -1.13 Total: -64.78 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: 0.16 Total: -23.50 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.40 -8.26 -43.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731809710.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.260 kcal (2) G-P(sol) polarization free energy of solvation -35.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds