Wall clock time and date at job start Tue Mar 31 2020 20:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46897 * 109.47165 * 2 1 4 4 C 1.46904 * 111.00228 * 76.12037 * 3 2 1 5 5 C 1.52995 * 109.47310 * 199.51478 * 4 3 2 6 6 N 1.46501 * 109.47046 * 174.89549 * 5 4 3 7 7 C 1.34781 * 119.99997 * 180.02562 * 6 5 4 8 8 O 1.21681 * 120.00036 * 5.08326 * 7 6 5 9 9 C 1.46759 * 120.00051 * 185.08346 * 7 6 5 10 10 C 1.36666 * 126.84682 * 5.02095 * 9 7 6 11 11 N 1.33318 * 107.79158 * 180.02562 * 10 9 7 12 12 C 1.30859 * 109.67923 * 359.72257 * 11 10 9 13 13 C 1.50707 * 125.41834 * 180.27130 * 12 11 10 14 14 N 1.34492 * 109.16628 * 0.45121 * 12 11 10 15 15 C 1.46498 * 126.47580 * 179.82174 * 14 12 11 16 16 C 1.46899 * 111.00226 * 200.07258 * 3 2 1 17 17 C 1.50704 * 109.46825 * 66.04908 * 16 3 2 18 18 O 1.21296 * 120.00078 * 359.97438 * 17 16 3 19 19 N 1.34773 * 119.99941 * 179.97438 * 17 16 3 20 20 C 1.37107 * 119.99782 * 179.97438 * 19 17 16 21 21 H 1.07999 * 120.00007 * 359.97438 * 20 19 17 22 22 C 1.38944 * 119.99643 * 180.02562 * 20 19 17 23 23 N 1.31412 * 120.00452 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99791 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46916 * 60.00432 * 24 22 20 26 26 H 1.48504 * 109.47190 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47335 * 299.99980 * 24 22 20 28 28 H 1.08999 * 109.46640 * 184.88476 * 1 2 3 29 29 H 1.08991 * 109.47318 * 304.88694 * 1 2 3 30 30 H 1.08997 * 109.46687 * 64.88702 * 1 2 3 31 31 H 1.08998 * 109.47605 * 239.99749 * 2 1 3 32 32 H 1.08997 * 109.47048 * 119.99934 * 2 1 3 33 33 H 1.09004 * 109.47177 * 79.51100 * 4 3 2 34 34 H 1.09001 * 109.47177 * 319.51884 * 4 3 2 35 35 H 1.08997 * 109.47325 * 54.89933 * 5 4 3 36 36 H 1.08997 * 109.47389 * 294.89774 * 5 4 3 37 37 H 0.97001 * 119.99914 * 0.02562 * 6 5 4 38 38 H 1.08000 * 126.10575 * 0.02562 * 10 9 7 39 39 H 1.08995 * 109.47276 * 270.21204 * 13 12 11 40 40 H 1.09000 * 109.46323 * 30.20545 * 13 12 11 41 41 H 1.09000 * 109.47234 * 150.20610 * 13 12 11 42 42 H 1.09004 * 109.47491 * 264.45194 * 15 14 12 43 43 H 1.08999 * 109.47241 * 144.44617 * 15 14 12 44 44 H 1.08998 * 109.46956 * 24.44713 * 15 14 12 45 45 H 1.08997 * 109.47299 * 186.04015 * 16 3 2 46 46 H 1.08997 * 109.47382 * 306.04830 * 16 3 2 47 47 H 0.96996 * 120.00578 * 359.97438 * 19 17 16 48 48 H 0.97003 * 120.00560 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8850 1.9910 1.3314 5 6 1.9306 3.5151 1.2050 6 7 1.6747 4.1215 2.5139 7 6 1.6654 5.4629 2.6449 8 8 1.7772 6.1710 1.6617 9 6 1.5205 6.0694 3.9734 10 6 1.4813 5.4157 5.1729 11 7 1.3397 6.3314 6.1314 12 6 1.2940 7.5251 5.5972 13 6 1.1461 8.8175 6.3582 14 7 1.3960 7.4149 4.2607 15 6 1.3838 8.5145 3.2927 16 6 3.4096 1.4520 -0.4707 17 6 3.4683 1.0510 -1.9222 18 8 2.4522 0.7396 -2.5069 19 7 4.6497 1.0385 -2.5707 20 6 4.7031 0.6732 -3.8911 21 1 3.7985 0.3951 -4.4114 22 6 5.9211 0.6597 -4.5594 23 7 7.0219 0.9976 -3.9262 24 14 5.9940 0.1614 -6.3582 25 1 5.1539 1.0850 -7.1622 26 1 7.3990 0.2299 -6.8344 27 1 5.4871 -1.2263 -6.5084 28 1 -0.3632 -1.0239 0.0875 29 1 -0.3633 0.5877 0.8429 30 1 -0.3632 0.4361 -0.9305 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.7032 1.6546 1.9682 34 1 0.9345 1.6912 1.7726 35 1 1.1696 3.8439 0.4973 36 1 2.9142 3.8209 0.8489 37 1 1.5120 3.5576 3.2862 38 1 1.5523 4.3479 5.3184 39 1 0.0881 9.0544 6.4698 40 1 1.6009 8.7131 7.3432 41 1 1.6424 9.6197 5.8120 42 1 0.3731 8.6477 2.9068 43 1 2.0593 8.2815 2.4696 44 1 1.7099 9.4325 3.7815 45 1 3.7821 2.4703 -0.3598 46 1 4.0260 0.7734 0.1189 47 1 5.4622 1.2878 -2.1033 48 1 7.8724 0.9879 -4.3926 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731809710.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:30 Heat of formation + Delta-G solvation = -31.708030 kcal Electronic energy + Delta-G solvation = -28573.950086 eV Core-core repulsion = 24471.102661 eV Total energy + Delta-G solvation = -4102.847425 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.31110 -40.66735 -40.24893 -38.33748 -36.15919 -35.75982 -34.96581 -33.30107 -33.03090 -32.03374 -30.66233 -28.76744 -27.95245 -27.35134 -25.95349 -24.31562 -23.35302 -22.27775 -21.53117 -20.97008 -20.71897 -19.85767 -18.86570 -17.92919 -17.35949 -17.24184 -16.98300 -16.81778 -16.42272 -16.12311 -16.04560 -15.62739 -15.39640 -15.30506 -14.89193 -14.73391 -14.44883 -14.21974 -14.10318 -14.01693 -13.76793 -13.66689 -13.42218 -13.30055 -13.08552 -13.00573 -12.83470 -12.62801 -12.56866 -12.42618 -12.14855 -12.01907 -11.75523 -11.56730 -11.39089 -10.99315 -10.78451 -10.27198 -10.23451 -9.98506 -9.49956 -9.21995 -8.45526 -5.93950 0.21877 1.39054 1.39681 1.41027 1.51866 1.72203 2.07367 2.14328 2.24534 2.30226 2.87292 3.21397 3.37898 3.40104 3.64166 3.84319 3.88932 3.93758 4.05096 4.18014 4.27325 4.28947 4.35013 4.40487 4.47847 4.53542 4.57484 4.61174 4.69392 4.73743 4.74712 4.80673 4.91438 5.03146 5.05032 5.15986 5.21908 5.29637 5.41410 5.43532 5.45788 5.90618 6.03156 6.09809 6.21540 6.39923 6.61859 6.84938 7.08088 7.14186 7.58210 8.14101 8.71709 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016085 B = 0.002017 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.288936 B =13879.743880 C =15014.520607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.054 3.946 3 N -0.534 5.534 4 C 0.052 3.948 5 C 0.133 3.867 6 N -0.697 5.697 7 C 0.592 3.408 8 O -0.583 6.583 9 C -0.116 4.116 10 C 0.048 3.952 11 N -0.526 5.526 12 C 0.229 3.771 13 C -0.072 4.072 14 N -0.432 5.432 15 C 0.064 3.936 16 C 0.056 3.944 17 C 0.441 3.559 18 O -0.611 6.611 19 N -0.576 5.576 20 C -0.331 4.331 21 H 0.079 0.921 22 C -0.015 4.015 23 N -0.922 5.922 24 Si 0.992 3.008 25 H -0.274 1.274 26 H -0.271 1.271 27 H -0.271 1.271 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.035 0.965 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.066 0.934 34 H 0.105 0.895 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.419 0.581 38 H 0.206 0.794 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.124 0.876 45 H 0.102 0.898 46 H 0.072 0.928 47 H 0.395 0.605 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.054 11.828 23.776 28.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.073 4.073 3 N -0.259 5.259 4 C -0.076 4.076 5 C 0.009 3.991 6 N -0.350 5.350 7 C 0.380 3.620 8 O -0.465 6.465 9 C -0.232 4.232 10 C -0.107 4.107 11 N -0.245 5.245 12 C -0.033 4.033 13 C -0.130 4.130 14 N -0.112 5.112 15 C -0.077 4.077 16 C -0.076 4.076 17 C 0.228 3.772 18 O -0.497 6.497 19 N -0.214 5.214 20 C -0.460 4.460 21 H 0.097 0.903 22 C -0.215 4.215 23 N -0.563 5.563 24 Si 0.816 3.184 25 H -0.199 1.199 26 H -0.196 1.196 27 H -0.196 1.196 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.124 0.876 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.257 0.743 38 H 0.223 0.777 39 H 0.119 0.881 40 H 0.119 0.881 41 H 0.117 0.883 42 H 0.104 0.896 43 H 0.099 0.901 44 H 0.142 0.858 45 H 0.120 0.880 46 H 0.090 0.910 47 H 0.229 0.771 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.784 12.366 22.975 28.232 hybrid contribution 1.206 -0.716 -1.208 1.852 sum -9.577 11.649 21.767 26.481 Atomic orbital electron populations 1.21640 0.93852 1.01828 1.01647 1.22093 0.97163 0.87526 1.00538 1.61328 1.18869 1.20299 1.25425 1.22263 1.03972 0.92045 0.89322 1.21159 1.01103 0.93106 0.83771 1.45300 1.71927 1.05195 1.12569 1.16974 0.76019 0.82751 0.86258 1.90808 1.52482 1.62393 1.40769 1.20674 1.21423 0.85349 0.95755 1.23125 1.00516 1.00804 0.86281 1.70164 1.22423 0.98884 1.33078 1.24293 1.00792 0.98045 0.80129 1.20517 1.05087 0.87509 0.99907 1.45318 1.51114 1.06465 1.08325 1.22400 1.04800 0.88202 0.92278 1.21787 0.90868 1.02938 0.91964 1.20777 0.83316 0.82928 0.90150 1.90485 1.35083 1.54187 1.69928 1.41949 1.08327 1.60266 1.10877 1.19609 0.94877 1.43950 0.87587 0.90301 1.26033 0.94143 0.97006 1.04281 1.69669 0.99067 1.48473 1.39063 0.84999 0.77537 0.78802 0.77061 1.19902 1.19552 1.19584 0.91274 0.91121 0.94532 0.92836 0.93055 0.91550 0.87645 0.92390 0.92575 0.74336 0.77695 0.88146 0.88134 0.88280 0.89618 0.90128 0.85816 0.87983 0.90983 0.77148 0.91380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.37 10.07 71.98 0.73 -2.65 16 2 C 0.05 1.61 5.18 86.30 0.45 2.05 16 3 N -0.53 -16.18 4.10 -900.80 -3.69 -19.87 16 4 C 0.05 1.05 4.92 86.30 0.42 1.47 16 5 C 0.13 3.11 5.71 86.38 0.49 3.60 16 6 N -0.70 -13.04 5.53 -467.01 -2.58 -15.62 16 7 C 0.59 14.47 7.78 86.47 0.67 15.14 16 8 O -0.58 -18.83 14.99 -4.29 -0.06 -18.90 16 9 C -0.12 -2.44 6.91 40.01 0.28 -2.17 16 10 C 0.05 0.86 11.36 84.10 0.96 1.81 16 11 N -0.53 -10.63 11.20 -187.39 -2.10 -12.73 16 12 C 0.23 3.79 7.88 138.20 1.09 4.88 16 13 C -0.07 -0.49 10.17 71.24 0.72 0.23 16 14 N -0.43 -7.99 3.17 -524.94 -1.67 -9.66 16 15 C 0.06 0.89 10.45 127.77 1.33 2.23 16 16 C 0.06 1.90 5.28 85.56 0.45 2.35 16 17 C 0.44 21.06 7.29 87.66 0.64 21.70 16 18 O -0.61 -33.62 14.12 -3.08 -0.04 -33.67 16 19 N -0.58 -29.95 5.29 -306.98 -1.62 -31.57 16 20 C -0.33 -18.98 9.68 84.04 0.81 -18.17 16 21 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 22 C -0.02 -0.82 5.50 84.92 0.47 -0.35 16 23 N -0.92 -50.47 13.05 21.66 0.28 -50.18 16 24 Si 0.99 43.62 29.55 68.60 2.03 45.64 16 25 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 26 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 27 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 28 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.07 1.43 6.68 -2.39 -0.02 1.41 16 30 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.05 2.08 5.85 -2.39 -0.01 2.06 16 32 H 0.05 1.22 7.99 -2.39 -0.02 1.21 16 33 H 0.07 1.07 8.00 -2.39 -0.02 1.06 16 34 H 0.11 1.67 6.47 -2.39 -0.02 1.65 16 35 H 0.06 1.67 8.14 -2.39 -0.02 1.66 16 36 H 0.06 1.50 6.95 -2.39 -0.02 1.48 16 37 H 0.42 4.67 7.46 -92.71 -0.69 3.98 16 38 H 0.21 2.14 7.50 -2.91 -0.02 2.12 16 39 H 0.10 0.42 8.14 -2.39 -0.02 0.41 16 40 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.10 0.24 6.95 -2.39 -0.02 0.22 16 42 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 43 H 0.08 1.54 6.69 -2.39 -0.02 1.53 16 44 H 0.12 0.73 6.86 -2.39 -0.02 0.72 16 45 H 0.10 3.23 6.70 -2.39 -0.02 3.21 16 46 H 0.07 2.14 8.12 -2.39 -0.02 2.12 16 47 H 0.39 19.57 7.90 -92.71 -0.73 18.84 16 48 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 Total: -1.00 -80.61 394.96 -0.37 -80.98 By element: Atomic # 1 Polarization: 33.87 SS G_CDS: -0.42 Total: 33.45 kcal Atomic # 6 Polarization: 22.61 SS G_CDS: 9.51 Total: 32.12 kcal Atomic # 7 Polarization: -128.25 SS G_CDS: -11.38 Total: -139.64 kcal Atomic # 8 Polarization: -52.46 SS G_CDS: -0.11 Total: -52.56 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -80.61 -0.37 -80.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731809710.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.273 kcal (2) G-P(sol) polarization free energy of solvation -80.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds