Wall clock time and date at job start Tue Mar 31 2020 21:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.35496 * 126.97860 * 2 1 4 4 N 1.30520 * 107.30702 * 179.97438 * 3 2 1 5 5 N 1.28598 * 109.67311 * 0.02562 * 4 3 2 6 6 C 1.30527 * 109.67046 * 359.72325 * 5 4 3 7 7 C 1.50696 * 126.34418 * 180.30395 * 6 5 4 8 8 O 1.42906 * 109.46966 * 270.15756 * 7 6 5 9 9 C 1.42904 * 113.99920 * 179.97438 * 8 7 6 10 10 C 1.50705 * 109.46798 * 180.02562 * 9 8 7 11 11 O 1.21276 * 119.99895 * 0.02562 * 10 9 8 12 12 N 1.34771 * 119.99907 * 180.02562 * 10 9 8 13 13 C 1.46497 * 120.00259 * 180.02562 * 12 10 9 14 14 H 1.08998 * 109.47291 * 35.00115 * 13 12 10 15 15 C 1.53004 * 109.47397 * 155.00117 * 13 12 10 16 16 C 1.53002 * 109.47149 * 180.02562 * 15 13 12 17 17 C 1.52993 * 109.47274 * 300.00278 * 16 15 13 18 18 H 1.09010 * 109.46845 * 299.99811 * 17 16 15 19 19 N 1.46497 * 109.47166 * 180.02562 * 17 16 15 20 20 C 1.36939 * 120.00050 * 155.00080 * 19 17 16 21 21 H 1.07991 * 120.00084 * 359.97438 * 20 19 17 22 22 C 1.38820 * 119.99911 * 180.02562 * 20 19 17 23 23 N 1.31613 * 119.99679 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 119.99756 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47200 * 90.00004 * 24 22 20 26 26 H 1.48508 * 109.46768 * 209.99642 * 24 22 20 27 27 H 1.48491 * 109.47366 * 329.99393 * 24 22 20 28 28 C 1.53004 * 109.47260 * 59.99790 * 17 16 15 29 29 C 1.53001 * 109.47202 * 299.99895 * 28 17 16 30 30 H 1.08999 * 109.46871 * 90.02764 * 1 2 3 31 31 H 1.08994 * 109.46947 * 210.02472 * 1 2 3 32 32 H 1.08997 * 109.47271 * 330.02988 * 1 2 3 33 33 H 1.07996 * 126.34359 * 359.96287 * 3 2 1 34 34 H 1.09002 * 109.47582 * 30.15930 * 7 6 5 35 35 H 1.08998 * 109.47289 * 150.16364 * 7 6 5 36 36 H 1.08994 * 109.47308 * 300.00246 * 9 8 7 37 37 H 1.09000 * 109.46458 * 60.00525 * 9 8 7 38 38 H 0.97003 * 119.99982 * 0.02562 * 12 10 9 39 39 H 1.08997 * 109.47052 * 300.00069 * 15 13 12 40 40 H 1.08998 * 109.46902 * 59.99759 * 15 13 12 41 41 H 1.09004 * 109.46589 * 60.00055 * 16 15 13 42 42 H 1.08995 * 109.47200 * 179.97438 * 16 15 13 43 43 H 0.97000 * 120.00265 * 334.99236 * 19 17 16 44 44 H 0.97004 * 119.99871 * 180.02562 * 23 22 20 45 45 H 1.08998 * 109.46902 * 60.00547 * 28 17 16 46 46 H 1.09006 * 109.46944 * 180.02562 * 28 17 16 47 47 H 1.08997 * 109.47061 * 300.00501 * 29 28 17 48 48 H 1.08994 * 109.46734 * 180.02562 * 29 28 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2801 1.0824 0.0000 4 7 3.5091 0.6431 0.0006 5 7 3.5091 -0.6429 0.0004 6 6 2.2801 -1.0823 0.0056 7 6 1.8478 -2.5259 0.0137 8 8 1.7112 -2.9898 -1.3311 9 6 1.3031 -4.3553 -1.4363 10 6 1.1924 -4.7358 -2.8903 11 8 1.4391 -3.9183 -3.7515 12 7 0.8192 -5.9845 -3.2335 13 6 0.7120 -6.3546 -4.6469 14 1 1.4837 -5.8378 -5.2173 15 6 0.8958 -7.8665 -4.7936 16 6 0.7845 -8.2529 -6.2698 17 6 -0.5941 -7.8530 -6.7992 18 1 -1.3661 -8.3699 -6.2291 19 7 -0.7008 -8.2235 -8.2125 20 6 -1.9308 -8.4513 -8.7696 21 1 -2.8221 -8.3582 -8.1670 22 6 -2.0319 -8.8030 -10.1087 23 7 -0.9455 -8.9170 -10.8429 24 14 -3.7097 -9.1143 -10.8684 25 1 -4.2477 -7.8440 -11.4180 26 1 -3.5807 -10.1113 -11.9616 27 1 -4.6344 -9.6354 -9.8300 28 6 -0.7778 -6.3411 -6.6525 29 6 -0.6667 -5.9547 -5.1762 30 1 -0.3633 -0.0005 -1.0277 31 1 -0.3633 -0.8897 0.5142 32 1 -0.3633 0.8902 0.5133 33 1 1.9702 2.1169 -0.0006 34 1 2.5960 -3.1265 0.5310 35 1 0.8909 -2.6158 0.5278 36 1 2.0404 -4.9934 -0.9492 37 1 0.3350 -4.4834 -0.9520 38 1 0.6214 -6.6382 -2.5446 39 1 1.8781 -8.1513 -4.4169 40 1 0.1241 -8.3833 -4.2231 41 1 1.5566 -7.7360 -6.8398 42 1 0.9159 -9.3299 -6.3744 43 1 0.0998 -8.3075 -8.7537 44 1 -1.0162 -9.1623 -11.7787 45 1 -0.0059 -5.8243 -7.2226 46 1 -1.7603 -6.0563 -7.0292 47 1 -1.4386 -6.4716 -4.6062 48 1 -0.7980 -4.8777 -5.0718 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732314712.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:04 Heat of formation + Delta-G solvation = 7.496545 kcal Electronic energy + Delta-G solvation = -28331.406631 eV Core-core repulsion = 24230.259244 eV Total energy + Delta-G solvation = -4101.147387 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.53328 -40.18313 -38.55273 -37.58503 -35.51358 -34.87929 -33.10996 -32.12615 -30.81190 -30.42835 -29.02016 -28.20635 -27.26903 -26.24314 -23.57755 -22.83301 -22.39688 -21.50607 -21.26984 -20.56505 -19.50139 -17.97098 -17.61293 -17.31095 -16.90499 -16.82598 -16.54062 -15.78740 -15.59532 -15.37286 -15.01643 -14.65437 -14.12722 -13.95889 -13.93045 -13.75555 -13.58579 -13.38052 -13.13895 -12.68800 -12.55163 -12.45000 -12.03670 -11.91140 -11.82928 -11.45416 -11.06175 -10.83145 -10.81074 -10.77782 -10.68087 -10.66163 -10.34952 -10.19147 -10.12728 -9.95753 -9.77489 -9.73064 -9.57671 -9.03507 -8.85197 -6.93910 -5.75274 -3.03776 1.18658 1.95768 2.32105 2.45456 2.72153 3.43586 3.46837 3.48525 3.50280 3.95706 4.04749 4.09608 4.27493 4.42349 4.47331 4.59053 4.61764 4.64932 4.73453 4.79772 4.88336 5.02524 5.05642 5.25612 5.36917 5.51169 5.58815 5.64576 5.66143 5.71429 5.82827 5.85699 6.00328 6.21345 6.23123 6.27693 6.29764 6.37781 6.46405 6.55974 6.63890 6.71634 6.98042 7.14644 7.35809 7.70842 8.09243 8.30171 8.43545 9.54416 10.13291 10.47674 11.47462 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023911 B = 0.001689 C = 0.001640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.739136 B =16572.516299 C =17064.048317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.468 5.468 3 C 0.156 3.844 4 N -0.296 5.296 5 N -0.270 5.270 6 C 0.173 3.827 7 C 0.150 3.850 8 O -0.355 6.355 9 C 0.045 3.955 10 C 0.511 3.489 11 O -0.514 6.514 12 N -0.724 5.724 13 C 0.147 3.853 14 H 0.088 0.912 15 C -0.118 4.118 16 C -0.121 4.121 17 C 0.177 3.823 18 H 0.046 0.954 19 N -0.725 5.725 20 C -0.237 4.237 21 H 0.070 0.930 22 C -0.015 4.015 23 N -0.933 5.933 24 Si 0.906 3.094 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.283 1.283 28 C -0.133 4.133 29 C -0.123 4.123 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.222 0.778 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.398 0.602 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.068 0.932 43 H 0.384 0.616 44 H 0.255 0.745 45 H 0.057 0.943 46 H 0.063 0.937 47 H 0.058 0.942 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.357 12.778 29.490 32.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.159 5.159 3 C -0.131 4.131 4 N -0.136 5.136 5 N -0.113 5.113 6 C -0.094 4.094 7 C 0.071 3.929 8 O -0.272 6.272 9 C -0.035 4.035 10 C 0.295 3.705 11 O -0.388 6.388 12 N -0.376 5.376 13 C 0.043 3.957 14 H 0.106 0.894 15 C -0.157 4.157 16 C -0.160 4.160 17 C 0.067 3.933 18 H 0.064 0.936 19 N -0.366 5.366 20 C -0.369 4.369 21 H 0.088 0.912 22 C -0.211 4.211 23 N -0.581 5.581 24 Si 0.737 3.263 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.208 1.208 28 C -0.174 4.174 29 C -0.162 4.162 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.113 0.887 33 H 0.238 0.762 34 H 0.110 0.890 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.232 0.768 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.217 0.783 44 H 0.065 0.935 45 H 0.075 0.925 46 H 0.082 0.918 47 H 0.077 0.923 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.873 13.450 28.620 31.753 hybrid contribution -2.404 -0.433 -0.164 2.448 sum 0.469 13.017 28.456 31.295 Atomic orbital electron populations 1.22188 0.74921 1.05181 1.04954 1.46188 1.09486 1.06706 1.53544 1.26534 0.87130 0.94991 1.04426 1.74309 1.18105 1.03042 1.18122 1.74284 1.16887 1.03345 1.16739 1.24246 0.87486 0.91369 1.06337 1.20494 1.00983 0.86074 0.85303 1.88111 1.89313 1.25576 1.24229 1.22282 1.01179 0.84430 0.95652 1.20096 0.77595 0.82647 0.90165 1.90780 1.47501 1.49385 1.51173 1.46035 1.70045 1.12211 1.09341 1.21138 0.98957 0.95753 0.79836 0.89362 1.21747 1.01632 0.93684 0.98590 1.21758 0.99279 1.01499 0.93459 1.20236 0.93915 0.91948 0.87159 0.93621 1.42430 1.06529 1.82436 1.05177 1.19237 0.85704 1.38795 0.93143 0.91244 1.24744 0.96937 1.02743 0.96644 1.69660 1.26361 1.54844 1.07246 0.86210 0.83675 0.77544 0.78881 1.21784 1.21807 1.20829 1.22235 1.02254 0.99905 0.92984 1.21894 0.95640 1.00715 0.97999 0.89254 0.89070 0.88656 0.76173 0.89040 0.91046 0.89641 0.89962 0.76850 0.91807 0.91529 0.91922 0.91298 0.78288 0.93544 0.92455 0.91799 0.92305 0.92438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.18 11.05 59.85 0.66 0.84 16 2 N -0.47 -3.36 3.15 -122.69 -0.39 -3.74 16 3 C 0.16 1.23 12.74 -89.94 -1.15 0.08 16 4 N -0.30 -3.68 12.21 29.69 0.36 -3.32 16 5 N -0.27 -3.59 12.21 32.79 0.40 -3.19 16 6 C 0.17 1.70 7.66 -154.99 -1.19 0.51 16 7 C 0.15 1.02 6.29 36.00 0.23 1.24 16 8 O -0.36 -3.64 9.86 -55.14 -0.54 -4.18 16 9 C 0.04 0.32 6.42 36.01 0.23 0.55 16 10 C 0.51 5.89 7.87 -10.99 -0.09 5.81 16 11 O -0.51 -8.85 16.16 -14.35 -0.23 -9.09 16 12 N -0.72 -6.92 5.08 -53.81 -0.27 -7.19 16 13 C 0.15 1.85 2.45 -67.93 -0.17 1.69 16 14 H 0.09 1.35 7.58 -51.93 -0.39 0.95 16 15 C -0.12 -1.38 5.39 -26.73 -0.14 -1.52 16 16 C -0.12 -1.89 5.39 -26.73 -0.14 -2.03 16 17 C 0.18 3.40 2.77 -67.93 -0.19 3.21 16 18 H 0.05 0.89 8.08 -51.92 -0.42 0.47 16 19 N -0.73 -18.01 5.12 -53.43 -0.27 -18.29 16 20 C -0.24 -6.55 9.93 -15.06 -0.15 -6.70 16 21 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 22 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 23 N -0.93 -28.25 13.06 55.49 0.72 -27.53 16 24 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 27 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 28 C -0.13 -2.39 5.50 -26.73 -0.15 -2.53 16 29 C -0.12 -1.76 5.50 -26.73 -0.15 -1.91 16 30 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.09 0.09 7.19 -51.93 -0.37 -0.29 16 32 H 0.09 -0.01 8.14 -51.93 -0.42 -0.43 16 33 H 0.22 0.66 8.06 -52.49 -0.42 0.23 16 34 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.22 7.21 -51.93 -0.37 -0.16 16 36 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.40 2.32 8.60 -40.82 -0.35 1.97 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 43 H 0.38 10.18 7.80 -40.82 -0.32 9.86 16 44 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 45 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 47 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 48 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 398.68 15.07 6.01 6.01 Total: -1.00 -40.02 398.68 -9.41 -49.43 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -7.69 Total: 5.01 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -2.48 Total: -1.29 kcal Atomic # 7 Polarization: -63.81 SS G_CDS: 0.55 Total: -63.25 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: -0.78 Total: -13.27 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -40.02 -9.41 -49.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732314712.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.930 kcal (2) G-P(sol) polarization free energy of solvation -40.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds