Wall clock time and date at job start Tue Mar 31 2020 21:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.35496 * 126.97860 * 2 1 4 4 N 1.30520 * 107.30702 * 179.97438 * 3 2 1 5 5 N 1.28598 * 109.67311 * 0.02562 * 4 3 2 6 6 C 1.30527 * 109.67046 * 359.72325 * 5 4 3 7 7 C 1.50696 * 126.34418 * 180.30395 * 6 5 4 8 8 O 1.42906 * 109.46966 * 270.15756 * 7 6 5 9 9 C 1.42904 * 113.99920 * 179.97438 * 8 7 6 10 10 C 1.50705 * 109.46798 * 180.02562 * 9 8 7 11 11 O 1.21276 * 119.99895 * 0.02562 * 10 9 8 12 12 N 1.34771 * 119.99907 * 180.02562 * 10 9 8 13 13 C 1.46497 * 120.00259 * 180.02562 * 12 10 9 14 14 H 1.08998 * 109.47291 * 35.00115 * 13 12 10 15 15 C 1.53004 * 109.47397 * 155.00117 * 13 12 10 16 16 C 1.53002 * 109.47149 * 180.02562 * 15 13 12 17 17 C 1.52993 * 109.47274 * 300.00278 * 16 15 13 18 18 H 1.09010 * 109.46845 * 299.99811 * 17 16 15 19 19 N 1.46497 * 109.47166 * 180.02562 * 17 16 15 20 20 C 1.36939 * 120.00050 * 155.00080 * 19 17 16 21 21 H 1.07991 * 120.00084 * 359.97438 * 20 19 17 22 22 C 1.38820 * 119.99911 * 180.02562 * 20 19 17 23 23 N 1.31613 * 119.99679 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 119.99756 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47200 * 90.00004 * 24 22 20 26 26 H 1.48508 * 109.46768 * 209.99642 * 24 22 20 27 27 H 1.48491 * 109.47366 * 329.99393 * 24 22 20 28 28 C 1.53004 * 109.47260 * 59.99790 * 17 16 15 29 29 C 1.53001 * 109.47202 * 299.99895 * 28 17 16 30 30 H 1.08999 * 109.46871 * 90.02764 * 1 2 3 31 31 H 1.08994 * 109.46947 * 210.02472 * 1 2 3 32 32 H 1.08997 * 109.47271 * 330.02988 * 1 2 3 33 33 H 1.07996 * 126.34359 * 359.96287 * 3 2 1 34 34 H 1.09002 * 109.47582 * 30.15930 * 7 6 5 35 35 H 1.08998 * 109.47289 * 150.16364 * 7 6 5 36 36 H 1.08994 * 109.47308 * 300.00246 * 9 8 7 37 37 H 1.09000 * 109.46458 * 60.00525 * 9 8 7 38 38 H 0.97003 * 119.99982 * 0.02562 * 12 10 9 39 39 H 1.08997 * 109.47052 * 300.00069 * 15 13 12 40 40 H 1.08998 * 109.46902 * 59.99759 * 15 13 12 41 41 H 1.09004 * 109.46589 * 60.00055 * 16 15 13 42 42 H 1.08995 * 109.47200 * 179.97438 * 16 15 13 43 43 H 0.97000 * 120.00265 * 334.99236 * 19 17 16 44 44 H 0.97004 * 119.99871 * 180.02562 * 23 22 20 45 45 H 1.08998 * 109.46902 * 60.00547 * 28 17 16 46 46 H 1.09006 * 109.46944 * 180.02562 * 28 17 16 47 47 H 1.08997 * 109.47061 * 300.00501 * 29 28 17 48 48 H 1.08994 * 109.46734 * 180.02562 * 29 28 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2801 1.0824 0.0000 4 7 3.5091 0.6431 0.0006 5 7 3.5091 -0.6429 0.0004 6 6 2.2801 -1.0823 0.0056 7 6 1.8478 -2.5259 0.0137 8 8 1.7112 -2.9898 -1.3311 9 6 1.3031 -4.3553 -1.4363 10 6 1.1924 -4.7358 -2.8903 11 8 1.4391 -3.9183 -3.7515 12 7 0.8192 -5.9845 -3.2335 13 6 0.7120 -6.3546 -4.6469 14 1 1.4837 -5.8378 -5.2173 15 6 0.8958 -7.8665 -4.7936 16 6 0.7845 -8.2529 -6.2698 17 6 -0.5941 -7.8530 -6.7992 18 1 -1.3661 -8.3699 -6.2291 19 7 -0.7008 -8.2235 -8.2125 20 6 -1.9308 -8.4513 -8.7696 21 1 -2.8221 -8.3582 -8.1670 22 6 -2.0319 -8.8030 -10.1087 23 7 -0.9455 -8.9170 -10.8429 24 14 -3.7097 -9.1143 -10.8684 25 1 -4.2477 -7.8440 -11.4180 26 1 -3.5807 -10.1113 -11.9616 27 1 -4.6344 -9.6354 -9.8300 28 6 -0.7778 -6.3411 -6.6525 29 6 -0.6667 -5.9547 -5.1762 30 1 -0.3633 -0.0005 -1.0277 31 1 -0.3633 -0.8897 0.5142 32 1 -0.3633 0.8902 0.5133 33 1 1.9702 2.1169 -0.0006 34 1 2.5960 -3.1265 0.5310 35 1 0.8909 -2.6158 0.5278 36 1 2.0404 -4.9934 -0.9492 37 1 0.3350 -4.4834 -0.9520 38 1 0.6214 -6.6382 -2.5446 39 1 1.8781 -8.1513 -4.4169 40 1 0.1241 -8.3833 -4.2231 41 1 1.5566 -7.7360 -6.8398 42 1 0.9159 -9.3299 -6.3744 43 1 0.0998 -8.3075 -8.7537 44 1 -1.0162 -9.1623 -11.7787 45 1 -0.0059 -5.8243 -7.2226 46 1 -1.7603 -6.0563 -7.0292 47 1 -1.4386 -6.4716 -4.6062 48 1 -0.7980 -4.8777 -5.0718 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732314712.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:02 Heat of formation + Delta-G solvation = -21.451671 kcal Electronic energy + Delta-G solvation = -28332.661920 eV Core-core repulsion = 24230.259244 eV Total energy + Delta-G solvation = -4102.402676 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.14750 -41.11537 -39.52843 -38.52522 -36.34643 -36.02325 -34.66190 -32.82274 -32.43522 -31.68439 -30.00820 -28.69372 -28.24438 -27.00692 -25.44473 -23.64815 -23.42335 -22.57616 -22.04803 -21.51890 -20.87599 -19.15436 -18.51734 -18.21277 -17.83738 -17.35195 -17.28124 -16.90341 -16.48767 -16.26224 -16.00849 -15.71538 -15.44786 -15.28693 -15.05369 -14.68865 -14.60439 -14.31086 -13.99091 -13.67211 -13.48238 -13.19617 -13.14313 -13.07725 -12.98681 -12.81739 -12.59843 -12.41480 -12.30932 -12.12617 -12.02412 -11.65276 -11.46390 -11.45142 -11.19999 -11.16301 -10.90036 -10.83306 -10.79064 -10.44344 -10.03181 -8.99146 -7.93046 -5.21238 0.62093 1.46629 1.48648 1.51467 1.56777 1.61956 1.68806 1.99207 2.56869 2.90895 3.39841 3.45006 3.65748 3.73712 3.80708 3.84477 3.88638 3.91850 3.94713 4.18368 4.26066 4.29442 4.36037 4.38664 4.39693 4.41309 4.54551 4.58387 4.60728 4.66237 4.69017 4.87093 4.87713 5.01691 5.08727 5.12883 5.14847 5.26389 5.28457 5.47854 5.54134 5.55757 5.64617 5.84874 5.93760 6.29583 6.63262 7.32050 7.34792 7.63772 8.13073 8.34897 9.30716 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023911 B = 0.001689 C = 0.001640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.739136 B =16572.516299 C =17064.048317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.466 5.466 3 C 0.166 3.834 4 N -0.353 5.353 5 N -0.327 5.327 6 C 0.164 3.836 7 C 0.150 3.850 8 O -0.398 6.398 9 C 0.050 3.950 10 C 0.504 3.496 11 O -0.583 6.583 12 N -0.704 5.704 13 C 0.153 3.847 14 H 0.056 0.944 15 C -0.103 4.103 16 C -0.115 4.115 17 C 0.173 3.827 18 H 0.052 0.948 19 N -0.740 5.740 20 C -0.236 4.236 21 H 0.077 0.923 22 C -0.081 4.081 23 N -0.972 5.972 24 Si 0.971 3.029 25 H -0.291 1.291 26 H -0.297 1.297 27 H -0.266 1.266 28 C -0.125 4.125 29 C -0.110 4.110 30 H 0.084 0.916 31 H 0.112 0.888 32 H 0.125 0.875 33 H 0.263 0.737 34 H 0.102 0.898 35 H 0.116 0.884 36 H 0.119 0.881 37 H 0.128 0.872 38 H 0.422 0.578 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.048 0.952 42 H 0.068 0.932 43 H 0.370 0.630 44 H 0.249 0.751 45 H 0.033 0.967 46 H 0.041 0.959 47 H 0.082 0.918 48 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.870 12.093 33.127 35.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.156 5.156 3 C -0.122 4.122 4 N -0.192 5.192 5 N -0.169 5.169 6 C -0.105 4.105 7 C 0.072 3.928 8 O -0.316 6.316 9 C -0.029 4.029 10 C 0.291 3.709 11 O -0.462 6.462 12 N -0.357 5.357 13 C 0.048 3.952 14 H 0.074 0.926 15 C -0.142 4.142 16 C -0.154 4.154 17 C 0.065 3.935 18 H 0.070 0.930 19 N -0.379 5.379 20 C -0.368 4.368 21 H 0.095 0.905 22 C -0.273 4.273 23 N -0.623 5.623 24 Si 0.801 3.199 25 H -0.219 1.219 26 H -0.223 1.223 27 H -0.191 1.191 28 C -0.166 4.166 29 C -0.149 4.149 30 H 0.102 0.898 31 H 0.130 0.870 32 H 0.143 0.857 33 H 0.279 0.721 34 H 0.120 0.880 35 H 0.134 0.866 36 H 0.136 0.864 37 H 0.146 0.854 38 H 0.260 0.740 39 H 0.107 0.893 40 H 0.112 0.888 41 H 0.066 0.934 42 H 0.087 0.913 43 H 0.202 0.798 44 H 0.058 0.942 45 H 0.052 0.948 46 H 0.059 0.941 47 H 0.101 0.899 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.609 12.737 32.361 34.782 hybrid contribution -1.747 -0.152 -1.250 2.154 sum -1.138 12.584 31.110 33.578 Atomic orbital electron populations 1.22565 0.72094 1.07809 1.05387 1.46478 1.11063 1.05713 1.52347 1.27319 0.86210 0.96767 1.01915 1.74163 1.20956 1.03286 1.20806 1.74140 1.19504 1.04103 1.19175 1.24856 0.87182 0.93295 1.05211 1.20791 1.03522 0.84247 0.84214 1.88042 1.89955 1.27236 1.26375 1.22437 1.04557 0.83694 0.92198 1.21051 0.75898 0.82105 0.91858 1.90761 1.50536 1.51374 1.53488 1.45745 1.69093 1.12472 1.08438 1.20807 0.96704 0.96206 0.81497 0.92595 1.21644 1.04123 0.92692 0.95715 1.21656 0.96359 1.01235 0.96168 1.20503 0.96351 0.92279 0.84415 0.93016 1.42699 1.05227 1.82607 1.07400 1.19648 0.86927 1.36813 0.93377 0.90501 1.25573 1.00421 1.03846 0.97420 1.69826 1.28481 1.56847 1.07141 0.85161 0.79775 0.76993 0.77995 1.21864 1.22323 1.19068 1.22048 1.00037 0.98868 0.95607 1.21746 0.97631 1.00161 0.95397 0.89786 0.86977 0.85686 0.72102 0.87969 0.86642 0.86351 0.85424 0.73972 0.89309 0.88762 0.93357 0.91335 0.79842 0.94197 0.94817 0.94057 0.89902 0.93684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.12 11.05 127.77 1.41 1.53 16 2 N -0.47 -5.90 3.15 -542.08 -1.71 -7.61 16 3 C 0.17 2.47 12.74 180.11 2.30 4.76 16 4 N -0.35 -9.06 12.21 -59.99 -0.73 -9.80 16 5 N -0.33 -8.97 12.21 -50.16 -0.61 -9.58 16 6 C 0.16 3.07 7.66 137.98 1.06 4.13 16 7 C 0.15 1.63 6.29 71.23 0.45 2.08 16 8 O -0.40 -7.32 9.86 -129.94 -1.28 -8.61 16 9 C 0.05 0.52 6.42 71.24 0.46 0.97 16 10 C 0.50 10.61 7.87 87.66 0.69 11.30 16 11 O -0.58 -20.32 16.16 16.02 0.26 -20.06 16 12 N -0.70 -11.21 5.08 -442.54 -2.25 -13.45 16 13 C 0.15 3.61 2.45 44.99 0.11 3.72 16 14 H 0.06 1.73 7.58 -2.39 -0.02 1.71 16 15 C -0.10 -2.09 5.39 30.60 0.16 -1.93 16 16 C -0.12 -3.50 5.39 30.59 0.16 -3.33 16 17 C 0.17 6.57 2.77 44.99 0.12 6.70 16 18 H 0.05 1.92 8.08 -2.38 -0.02 1.91 16 19 N -0.74 -37.51 5.12 -322.94 -1.65 -39.17 16 20 C -0.24 -13.10 9.93 84.04 0.83 -12.27 16 21 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 22 C -0.08 -4.68 5.50 84.86 0.47 -4.22 16 23 N -0.97 -60.45 13.06 21.65 0.28 -60.17 16 24 Si 0.97 46.44 29.55 68.60 2.03 48.47 16 25 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 26 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 27 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 28 C -0.12 -4.57 5.50 30.60 0.17 -4.40 16 29 C -0.11 -3.03 5.50 30.60 0.17 -2.86 16 30 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.11 -0.25 7.19 -2.39 -0.02 -0.26 16 32 H 0.12 -0.50 8.14 -2.39 -0.02 -0.52 16 33 H 0.26 1.00 8.06 -2.91 -0.02 0.98 16 34 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.12 0.16 7.21 -2.39 -0.02 0.14 16 36 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 37 H 0.13 0.18 8.14 -2.39 -0.02 0.16 16 38 H 0.42 2.76 8.60 -92.71 -0.80 1.96 16 39 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 42 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.37 20.40 7.80 -92.71 -0.72 19.68 16 44 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 45 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 47 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 48 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -95.58 398.68 2.35 -93.23 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: -0.54 Total: 20.54 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: 8.56 Total: 6.20 kcal Atomic # 7 Polarization: -133.10 SS G_CDS: -6.67 Total: -139.77 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -1.02 Total: -28.67 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -95.58 2.35 -93.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732314712.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.777 kcal (2) G-P(sol) polarization free energy of solvation -95.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds