Wall clock time and date at job start Tue Mar 31 2020 21:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37355 * 125.83441 * 2 1 4 4 N 1.29397 * 108.83410 * 179.97438 * 3 2 1 5 5 N 1.40173 * 108.13589 * 359.97438 * 4 3 2 6 6 C 1.46503 * 126.34429 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47056 * 270.02605 * 6 5 4 8 8 O 1.21283 * 120.00221 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00210 * 180.02562 * 7 6 5 10 10 C 1.46925 * 120.62471 * 5.52985 * 9 7 6 11 11 C 1.53171 * 108.76486 * 233.62789 * 10 9 7 12 12 C 1.53033 * 109.33022 * 305.35874 * 11 10 9 13 13 C 1.53039 * 109.52553 * 61.36962 * 12 11 10 14 14 C 1.46923 * 120.63328 * 185.54939 * 9 7 6 15 15 H 1.08994 * 109.58748 * 246.15471 * 14 9 7 16 16 C 1.52999 * 109.58810 * 6.58479 * 14 9 7 17 17 C 1.52994 * 109.47599 * 178.13923 * 16 14 9 18 18 N 1.46496 * 109.47769 * 184.84890 * 17 16 14 19 19 C 1.36934 * 120.00337 * 179.97438 * 18 17 16 20 20 H 1.07996 * 120.00136 * 0.02562 * 19 18 17 21 21 C 1.38815 * 119.99855 * 180.02562 * 19 18 17 22 22 N 1.31622 * 120.00148 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99730 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47192 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46819 * 119.99870 * 23 21 19 26 26 H 1.48493 * 109.46867 * 239.99821 * 23 21 19 27 27 C 1.34818 * 125.82949 * 180.27902 * 2 1 3 28 28 O 1.21805 * 126.30698 * 0.04189 * 27 2 1 29 29 H 1.08999 * 109.47508 * 0.03123 * 1 2 3 30 30 H 1.09001 * 109.47107 * 120.03159 * 1 2 3 31 31 H 1.09000 * 109.47363 * 240.02623 * 1 2 3 32 32 H 1.08009 * 125.57907 * 359.95325 * 3 2 1 33 33 H 1.08998 * 109.46579 * 150.03022 * 6 5 4 34 34 H 1.08997 * 109.47571 * 30.02617 * 6 5 4 35 35 H 1.08992 * 109.59268 * 353.41874 * 10 9 7 36 36 H 1.09001 * 109.58941 * 113.84692 * 10 9 7 37 37 H 1.09006 * 109.47574 * 185.40882 * 11 10 9 38 38 H 1.08998 * 109.49757 * 65.32263 * 11 10 9 39 39 H 1.09004 * 109.46023 * 301.35671 * 12 11 10 40 40 H 1.09001 * 109.46345 * 181.38398 * 12 11 10 41 41 H 1.08994 * 109.49606 * 58.59851 * 13 12 11 42 42 H 1.09008 * 109.49601 * 178.69038 * 13 12 11 43 43 H 1.09002 * 109.47070 * 298.14391 * 16 14 9 44 44 H 1.09007 * 109.46926 * 58.13854 * 16 14 9 45 45 H 1.09001 * 109.46996 * 304.85094 * 17 16 14 46 46 H 1.09004 * 109.46745 * 64.84499 * 17 16 14 47 47 H 0.97000 * 119.99494 * 0.02562 * 18 17 16 48 48 H 0.96992 * 119.99730 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2691 1.1136 0.0000 4 7 3.5066 0.7352 0.0005 5 7 3.5343 -0.6662 0.0015 6 6 4.7313 -1.5109 0.0029 7 6 5.1431 -1.8010 -1.4174 8 8 4.5003 -1.3465 -2.3400 9 7 6.2257 -2.5654 -1.6625 10 6 6.9432 -3.2220 -0.5612 11 6 8.4252 -2.8440 -0.6441 12 6 8.9590 -3.1895 -2.0361 13 6 8.1958 -2.3850 -3.0908 14 6 6.7110 -2.7578 -3.0359 15 1 6.5852 -3.8011 -3.3251 16 6 5.9210 -1.8593 -3.9896 17 6 6.4593 -2.0271 -5.4118 18 7 5.7823 -1.0835 -6.3048 19 6 6.1026 -1.0501 -7.6358 20 1 6.8540 -1.7198 -8.0273 21 6 5.4615 -0.1556 -8.4817 22 7 4.5460 0.6609 -8.0045 23 14 5.8989 -0.1097 -10.2972 24 1 6.9504 -1.1198 -10.5788 25 1 4.6910 -0.4149 -11.1053 26 1 6.4027 1.2417 -10.6509 27 6 2.2542 -1.0930 -0.0053 28 8 1.8805 -2.2523 -0.0117 29 1 -0.3634 1.0276 -0.0006 30 1 -0.3633 -0.5143 -0.8897 31 1 -0.3634 -0.5134 0.8902 32 1 1.9249 2.1373 -0.0007 33 1 4.5145 -2.4474 0.5168 34 1 5.5409 -0.9931 0.5173 35 1 6.5337 -2.8882 0.3921 36 1 6.8364 -4.3032 -0.6486 37 1 8.9847 -3.3998 0.1084 38 1 8.5385 -1.7746 -0.4661 39 1 8.8229 -4.2547 -2.2231 40 1 10.0197 -2.9441 -2.0895 41 1 8.3113 -1.3200 -2.8898 42 1 8.5921 -2.6141 -4.0801 43 1 4.8679 -2.1395 -3.9642 44 1 6.0278 -0.8192 -3.6810 45 1 7.5313 -1.8300 -5.4202 46 1 6.2746 -3.0460 -5.7523 47 1 5.1077 -0.4817 -5.9531 48 1 4.0978 1.2857 -8.5957 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732511985.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:02 Heat of formation + Delta-G solvation = 45.450131 kcal Electronic energy + Delta-G solvation = -30249.962917 eV Core-core repulsion = 26150.461321 eV Total energy + Delta-G solvation = -4099.501596 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.50845 -40.50373 -37.52087 -37.29789 -35.53065 -35.03096 -33.19629 -32.74434 -31.79176 -30.55466 -28.59298 -27.78716 -27.02513 -24.89261 -24.07418 -23.07654 -22.30298 -21.49918 -20.94928 -20.56902 -19.16006 -17.76486 -17.43445 -16.85372 -16.42177 -16.20105 -15.95409 -15.74683 -15.24246 -14.74245 -14.57063 -14.51223 -14.36214 -13.96860 -13.71887 -13.53383 -13.32077 -13.11762 -13.01709 -12.96596 -12.64232 -12.56517 -12.28662 -12.09186 -11.98971 -11.36354 -11.24426 -11.08631 -10.88990 -10.80709 -10.70847 -10.40000 -10.39055 -10.34770 -10.29110 -9.90537 -9.57491 -8.95114 -8.74570 -8.53711 -8.47334 -6.76063 -5.63313 -2.91212 1.53575 1.86447 2.56933 2.61401 2.87753 3.09877 3.50357 3.54940 3.57918 4.21445 4.29952 4.53840 4.60016 4.68087 4.69905 4.73659 4.81299 4.86197 5.00571 5.02783 5.17593 5.20225 5.22082 5.27779 5.38655 5.57356 5.62661 5.67391 5.68467 5.78154 5.80267 5.91874 5.98558 6.01490 6.15200 6.29350 6.36241 6.41815 6.45991 6.61963 6.70938 7.11974 7.22253 7.41121 7.48908 7.80715 7.93692 8.24527 8.55723 9.66125 10.28621 10.63426 11.59904 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008644 B = 0.003563 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3238.523234 B = 7855.641582 C =10529.843934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.561 5.561 3 C 0.257 3.743 4 N -0.273 5.273 5 N -0.437 5.437 6 C 0.143 3.857 7 C 0.493 3.507 8 O -0.498 6.498 9 N -0.609 5.609 10 C 0.106 3.894 11 C -0.135 4.135 12 C -0.120 4.120 13 C -0.133 4.133 14 C 0.154 3.846 15 H 0.071 0.929 16 C -0.116 4.116 17 C 0.148 3.852 18 N -0.731 5.731 19 C -0.235 4.235 20 H 0.069 0.931 21 C -0.017 4.017 22 N -0.933 5.933 23 Si 0.906 3.094 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 C 0.653 3.347 28 O -0.554 6.554 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.232 0.768 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.083 0.917 43 H 0.089 0.911 44 H 0.067 0.933 45 H 0.017 0.983 46 H 0.012 0.988 47 H 0.385 0.615 48 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.361 -3.344 26.159 26.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.290 5.290 3 C -0.042 4.042 4 N -0.093 5.093 5 N -0.257 5.257 6 C 0.018 3.982 7 C 0.278 3.722 8 O -0.372 6.372 9 N -0.344 5.344 10 C -0.017 4.017 11 C -0.174 4.174 12 C -0.158 4.158 13 C -0.172 4.172 14 C 0.052 3.948 15 H 0.089 0.911 16 C -0.154 4.154 17 C 0.020 3.980 18 N -0.375 5.375 19 C -0.366 4.366 20 H 0.087 0.913 21 C -0.213 4.213 22 N -0.582 5.582 23 Si 0.737 3.263 24 H -0.206 1.206 25 H -0.220 1.220 26 H -0.219 1.219 27 C 0.353 3.647 28 O -0.427 6.427 29 H 0.112 0.888 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.248 0.752 33 H 0.137 0.863 34 H 0.140 0.860 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.102 0.898 43 H 0.107 0.893 44 H 0.086 0.914 45 H 0.034 0.966 46 H 0.030 0.970 47 H 0.218 0.782 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.825 -3.720 25.502 25.785 hybrid contribution -0.657 0.119 -0.987 1.191 sum 0.168 -3.601 24.515 24.779 Atomic orbital electron populations 1.21801 0.74097 1.04186 1.03915 1.45849 1.08884 1.06636 1.67649 1.25949 0.85757 0.94726 0.97784 1.76999 1.18272 0.91272 1.22772 1.48198 1.05352 1.03246 1.68945 1.21301 0.85707 0.94913 0.96304 1.20847 0.80901 0.79080 0.91361 1.90888 1.52247 1.50135 1.43882 1.48143 1.28627 1.49554 1.08126 1.21769 0.92602 0.97923 0.89452 1.21926 0.95082 1.02250 0.98095 1.21536 0.99672 1.00305 0.94265 1.22079 0.94447 1.00752 0.99874 1.21307 0.93510 1.00014 0.80002 0.91070 1.22223 1.00636 0.99317 0.93177 1.20819 0.94968 0.93170 0.89087 1.42364 1.47029 1.42794 1.05310 1.19302 1.16980 1.15511 0.84830 0.91259 1.24747 0.99331 0.99152 0.98052 1.69700 1.29021 1.25301 1.34197 0.86126 0.77406 0.77150 0.85616 1.20606 1.21953 1.21944 1.16617 0.81883 0.85071 0.81158 1.91073 1.77706 1.15329 1.58589 0.88803 0.90340 0.90586 0.75227 0.86261 0.86050 0.90188 0.90929 0.90791 0.91324 0.91801 0.91665 0.91358 0.89820 0.89261 0.91423 0.96564 0.97000 0.78162 0.93708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.69 11.08 59.85 0.66 1.36 16 2 N -0.56 -6.16 3.14 -130.11 -0.41 -6.57 16 3 C 0.26 2.38 12.61 -89.13 -1.12 1.25 16 4 N -0.27 -3.47 12.53 29.87 0.37 -3.09 16 5 N -0.44 -6.12 3.11 -66.31 -0.21 -6.32 16 6 C 0.14 1.65 5.22 -5.19 -0.03 1.62 16 7 C 0.49 7.45 7.60 -10.99 -0.08 7.36 16 8 O -0.50 -10.09 11.98 5.56 0.07 -10.03 16 9 N -0.61 -7.72 2.97 -165.24 -0.49 -8.22 16 10 C 0.11 0.85 6.35 -3.72 -0.02 0.83 16 11 C -0.14 -1.00 6.08 -26.63 -0.16 -1.16 16 12 C -0.12 -1.09 5.88 -26.69 -0.16 -1.25 16 13 C -0.13 -1.69 4.81 -26.61 -0.13 -1.82 16 14 C 0.15 2.27 3.03 -67.60 -0.20 2.07 16 15 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 16 C -0.12 -2.30 3.29 -26.73 -0.09 -2.39 16 17 C 0.15 3.34 6.02 -4.05 -0.02 3.31 16 18 N -0.73 -20.75 5.60 -59.91 -0.34 -21.09 16 19 C -0.23 -7.10 9.99 -15.06 -0.15 -7.25 16 20 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 21 C -0.02 -0.53 5.50 -17.43 -0.10 -0.62 16 22 N -0.93 -30.21 13.06 55.49 0.72 -29.49 16 23 Si 0.91 23.56 29.55 -169.99 -5.02 18.54 16 24 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 26 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 27 C 0.65 9.89 8.61 -86.73 -0.75 9.15 16 28 O -0.55 -10.06 17.77 5.09 0.09 -9.97 16 29 H 0.09 0.28 8.07 -51.93 -0.42 -0.14 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.23 0.82 8.06 -52.48 -0.42 0.40 16 33 H 0.12 1.13 7.69 -51.93 -0.40 0.73 16 34 H 0.12 1.02 7.92 -51.93 -0.41 0.61 16 35 H 0.08 0.45 5.93 -51.93 -0.31 0.14 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.08 1.12 6.63 -51.92 -0.34 0.78 16 43 H 0.09 2.03 6.24 -51.93 -0.32 1.71 16 44 H 0.07 1.49 7.24 -51.92 -0.38 1.11 16 45 H 0.02 0.36 6.29 -51.93 -0.33 0.03 16 46 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 47 H 0.38 11.74 7.67 -40.82 -0.31 11.43 16 48 H 0.25 7.84 8.31 -40.82 -0.34 7.50 16 LS Contribution 386.40 15.07 5.82 5.82 Total: -1.00 -42.26 386.40 -9.16 -51.42 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -7.42 Total: 6.53 kcal Atomic # 6 Polarization: 14.81 SS G_CDS: -2.35 Total: 12.46 kcal Atomic # 7 Polarization: -74.43 SS G_CDS: -0.34 Total: -74.78 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: 0.16 Total: -19.99 kcal Atomic # 14 Polarization: 23.56 SS G_CDS: -5.02 Total: 18.54 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -42.26 -9.16 -51.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732511985.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.865 kcal (2) G-P(sol) polarization free energy of solvation -42.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds