Wall clock time and date at job start Tue Mar 31 2020 21:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37355 * 125.83441 * 2 1 4 4 N 1.29397 * 108.83410 * 179.97438 * 3 2 1 5 5 N 1.40173 * 108.13589 * 359.97438 * 4 3 2 6 6 C 1.46503 * 126.34429 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47056 * 270.02605 * 6 5 4 8 8 O 1.21283 * 120.00221 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00210 * 180.02562 * 7 6 5 10 10 C 1.46925 * 120.62471 * 5.52985 * 9 7 6 11 11 C 1.53171 * 108.76486 * 233.62789 * 10 9 7 12 12 C 1.53033 * 109.33022 * 305.35874 * 11 10 9 13 13 C 1.53039 * 109.52553 * 61.36962 * 12 11 10 14 14 C 1.46923 * 120.63328 * 185.54939 * 9 7 6 15 15 H 1.08994 * 109.58748 * 246.15471 * 14 9 7 16 16 C 1.52999 * 109.58810 * 6.58479 * 14 9 7 17 17 C 1.52994 * 109.47599 * 178.13923 * 16 14 9 18 18 N 1.46496 * 109.47769 * 184.84890 * 17 16 14 19 19 C 1.36934 * 120.00337 * 179.97438 * 18 17 16 20 20 H 1.07996 * 120.00136 * 0.02562 * 19 18 17 21 21 C 1.38815 * 119.99855 * 180.02562 * 19 18 17 22 22 N 1.31622 * 120.00148 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99730 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47192 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46819 * 119.99870 * 23 21 19 26 26 H 1.48493 * 109.46867 * 239.99821 * 23 21 19 27 27 C 1.34818 * 125.82949 * 180.27902 * 2 1 3 28 28 O 1.21805 * 126.30698 * 0.04189 * 27 2 1 29 29 H 1.08999 * 109.47508 * 0.03123 * 1 2 3 30 30 H 1.09001 * 109.47107 * 120.03159 * 1 2 3 31 31 H 1.09000 * 109.47363 * 240.02623 * 1 2 3 32 32 H 1.08009 * 125.57907 * 359.95325 * 3 2 1 33 33 H 1.08998 * 109.46579 * 150.03022 * 6 5 4 34 34 H 1.08997 * 109.47571 * 30.02617 * 6 5 4 35 35 H 1.08992 * 109.59268 * 353.41874 * 10 9 7 36 36 H 1.09001 * 109.58941 * 113.84692 * 10 9 7 37 37 H 1.09006 * 109.47574 * 185.40882 * 11 10 9 38 38 H 1.08998 * 109.49757 * 65.32263 * 11 10 9 39 39 H 1.09004 * 109.46023 * 301.35671 * 12 11 10 40 40 H 1.09001 * 109.46345 * 181.38398 * 12 11 10 41 41 H 1.08994 * 109.49606 * 58.59851 * 13 12 11 42 42 H 1.09008 * 109.49601 * 178.69038 * 13 12 11 43 43 H 1.09002 * 109.47070 * 298.14391 * 16 14 9 44 44 H 1.09007 * 109.46926 * 58.13854 * 16 14 9 45 45 H 1.09001 * 109.46996 * 304.85094 * 17 16 14 46 46 H 1.09004 * 109.46745 * 64.84499 * 17 16 14 47 47 H 0.97000 * 119.99494 * 0.02562 * 18 17 16 48 48 H 0.96992 * 119.99730 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2691 1.1136 0.0000 4 7 3.5066 0.7352 0.0005 5 7 3.5343 -0.6662 0.0015 6 6 4.7313 -1.5109 0.0029 7 6 5.1431 -1.8010 -1.4174 8 8 4.5003 -1.3465 -2.3400 9 7 6.2257 -2.5654 -1.6625 10 6 6.9432 -3.2220 -0.5612 11 6 8.4252 -2.8440 -0.6441 12 6 8.9590 -3.1895 -2.0361 13 6 8.1958 -2.3850 -3.0908 14 6 6.7110 -2.7578 -3.0359 15 1 6.5852 -3.8011 -3.3251 16 6 5.9210 -1.8593 -3.9896 17 6 6.4593 -2.0271 -5.4118 18 7 5.7823 -1.0835 -6.3048 19 6 6.1026 -1.0501 -7.6358 20 1 6.8540 -1.7198 -8.0273 21 6 5.4615 -0.1556 -8.4817 22 7 4.5460 0.6609 -8.0045 23 14 5.8989 -0.1097 -10.2972 24 1 6.9504 -1.1198 -10.5788 25 1 4.6910 -0.4149 -11.1053 26 1 6.4027 1.2417 -10.6509 27 6 2.2542 -1.0930 -0.0053 28 8 1.8805 -2.2523 -0.0117 29 1 -0.3634 1.0276 -0.0006 30 1 -0.3633 -0.5143 -0.8897 31 1 -0.3634 -0.5134 0.8902 32 1 1.9249 2.1373 -0.0007 33 1 4.5145 -2.4474 0.5168 34 1 5.5409 -0.9931 0.5173 35 1 6.5337 -2.8882 0.3921 36 1 6.8364 -4.3032 -0.6486 37 1 8.9847 -3.3998 0.1084 38 1 8.5385 -1.7746 -0.4661 39 1 8.8229 -4.2547 -2.2231 40 1 10.0197 -2.9441 -2.0895 41 1 8.3113 -1.3200 -2.8898 42 1 8.5921 -2.6141 -4.0801 43 1 4.8679 -2.1395 -3.9642 44 1 6.0278 -0.8192 -3.6810 45 1 7.5313 -1.8300 -5.4202 46 1 6.2746 -3.0460 -5.7523 47 1 5.1077 -0.4817 -5.9531 48 1 4.0978 1.2857 -8.5957 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732511985.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:01 Heat of formation + Delta-G solvation = 15.060008 kcal Electronic energy + Delta-G solvation = -30251.280732 eV Core-core repulsion = 26150.461321 eV Total energy + Delta-G solvation = -4100.819411 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.43242 -41.61868 -38.60771 -38.42634 -37.06423 -36.26074 -34.70146 -33.90304 -32.87871 -32.28439 -29.51362 -29.28250 -27.85355 -26.28358 -25.38625 -24.36502 -23.57784 -22.53743 -22.13207 -21.79506 -20.18805 -19.27692 -18.65633 -18.25137 -17.47024 -17.21753 -16.97629 -16.88151 -16.53867 -16.28371 -15.78876 -15.49768 -15.43394 -15.30524 -15.03517 -14.88107 -14.59426 -14.41595 -14.14909 -13.94465 -13.56480 -13.51194 -13.43921 -13.28292 -12.95402 -12.92262 -12.84843 -12.72975 -12.32594 -12.11523 -11.97832 -11.92039 -11.77283 -11.55082 -11.43142 -11.41600 -11.26268 -10.97727 -10.17091 -9.61279 -9.60028 -9.05521 -7.98372 -5.29821 0.65534 1.06939 1.42506 1.45921 1.49469 1.53918 1.56152 1.93380 2.27066 2.52738 3.32547 3.34335 3.42695 3.73915 3.82216 3.92043 4.02439 4.06639 4.07723 4.10709 4.12459 4.23360 4.38331 4.39488 4.43936 4.45785 4.56903 4.66475 4.71841 4.75884 4.77071 4.87312 4.90625 4.97204 4.98997 5.12655 5.17028 5.24510 5.33996 5.37628 5.45205 5.50465 5.63965 5.67550 6.22522 6.35618 6.58573 6.89666 7.12867 7.26686 8.02300 8.27708 9.26390 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008644 B = 0.003563 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3238.523234 B = 7855.641582 C =10529.843934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.560 5.560 3 C 0.275 3.725 4 N -0.311 5.311 5 N -0.445 5.445 6 C 0.144 3.856 7 C 0.483 3.517 8 O -0.564 6.564 9 N -0.603 5.603 10 C 0.096 3.904 11 C -0.130 4.130 12 C -0.116 4.116 13 C -0.128 4.128 14 C 0.158 3.842 15 H 0.079 0.921 16 C -0.090 4.090 17 C 0.148 3.852 18 N -0.749 5.749 19 C -0.250 4.250 20 H 0.079 0.921 21 C -0.081 4.081 22 N -0.975 5.975 23 Si 0.983 3.017 24 H -0.262 1.262 25 H -0.291 1.291 26 H -0.289 1.289 27 C 0.631 3.369 28 O -0.599 6.599 29 H 0.141 0.859 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.287 0.713 33 H 0.141 0.859 34 H 0.156 0.844 35 H 0.110 0.890 36 H 0.088 0.912 37 H 0.108 0.892 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.051 0.949 42 H 0.073 0.927 43 H 0.054 0.946 44 H 0.038 0.962 45 H 0.031 0.969 46 H 0.015 0.985 47 H 0.368 0.632 48 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.921 -3.617 27.776 28.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.288 5.288 3 C -0.022 4.022 4 N -0.132 5.132 5 N -0.264 5.264 6 C 0.019 3.981 7 C 0.270 3.730 8 O -0.442 6.442 9 N -0.338 5.338 10 C -0.025 4.025 11 C -0.168 4.168 12 C -0.153 4.153 13 C -0.166 4.166 14 C 0.054 3.946 15 H 0.097 0.903 16 C -0.128 4.128 17 C 0.021 3.979 18 N -0.391 5.391 19 C -0.381 4.381 20 H 0.097 0.903 21 C -0.273 4.273 22 N -0.626 5.626 23 Si 0.811 3.189 24 H -0.186 1.186 25 H -0.218 1.218 26 H -0.216 1.216 27 C 0.330 3.670 28 O -0.476 6.476 29 H 0.159 0.841 30 H 0.079 0.921 31 H 0.102 0.898 32 H 0.302 0.698 33 H 0.159 0.841 34 H 0.174 0.826 35 H 0.128 0.872 36 H 0.107 0.893 37 H 0.126 0.874 38 H 0.082 0.918 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.070 0.930 42 H 0.092 0.908 43 H 0.073 0.927 44 H 0.057 0.943 45 H 0.049 0.951 46 H 0.033 0.967 47 H 0.198 0.802 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.445 -4.020 27.173 27.578 hybrid contribution -1.175 0.218 -1.444 1.874 sum 1.270 -3.802 25.730 26.040 Atomic orbital electron populations 1.22148 0.71869 1.07179 1.03445 1.46139 1.10252 1.06022 1.66343 1.27110 0.84605 0.96130 0.94399 1.76989 1.20323 0.90492 1.25438 1.48435 1.05485 1.04065 1.68367 1.21542 0.86290 0.96280 0.93948 1.21597 0.80663 0.78384 0.92377 1.90866 1.54461 1.52829 1.46047 1.48254 1.28178 1.48896 1.08423 1.22214 0.92820 0.98548 0.88888 1.21928 0.94539 1.02539 0.97748 1.21534 0.99757 1.00128 0.93890 1.22001 0.93123 1.00475 1.01014 1.21126 0.94120 0.98883 0.80434 0.90286 1.21855 0.99284 0.98736 0.92944 1.20999 0.95216 0.91873 0.89812 1.42647 1.47133 1.43532 1.05801 1.19765 1.17010 1.15551 0.85799 0.90265 1.25746 0.99389 0.98874 1.03267 1.69892 1.30435 1.26240 1.36006 0.84934 0.77411 0.77502 0.79050 1.18605 1.21838 1.21557 1.17055 0.82873 0.85498 0.81541 1.91008 1.78594 1.17211 1.60815 0.84083 0.92087 0.89834 0.69800 0.84141 0.82629 0.87160 0.89334 0.87374 0.91795 0.90683 0.90386 0.93020 0.90849 0.92750 0.94323 0.95107 0.96729 0.80153 0.93934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.18 11.08 127.77 1.42 2.60 16 2 N -0.56 -12.03 3.14 -683.69 -2.15 -14.18 16 3 C 0.28 4.67 12.61 179.83 2.27 6.94 16 4 N -0.31 -7.79 12.53 -59.41 -0.74 -8.54 16 5 N -0.44 -12.57 3.11 -481.79 -1.50 -14.07 16 6 C 0.14 3.24 5.22 85.63 0.45 3.69 16 7 C 0.48 15.01 7.60 87.66 0.67 15.68 16 8 O -0.56 -24.58 11.98 -3.04 -0.04 -24.62 16 9 N -0.60 -15.05 2.97 -795.09 -2.36 -17.42 16 10 C 0.10 1.26 6.35 86.36 0.55 1.81 16 11 C -0.13 -1.45 6.08 30.66 0.19 -1.26 16 12 C -0.12 -1.78 5.88 30.62 0.18 -1.60 16 13 C -0.13 -3.17 4.81 30.67 0.15 -3.02 16 14 C 0.16 4.72 3.03 44.97 0.14 4.85 16 15 H 0.08 2.24 8.14 -2.39 -0.02 2.23 16 16 C -0.09 -3.82 3.29 30.59 0.10 -3.72 16 17 C 0.15 6.95 6.02 86.38 0.52 7.47 16 18 N -0.75 -44.44 5.60 -343.47 -1.92 -46.36 16 19 C -0.25 -15.40 9.99 84.03 0.84 -14.56 16 20 H 0.08 4.61 7.83 -2.91 -0.02 4.59 16 21 C -0.08 -5.05 5.50 84.86 0.47 -4.58 16 22 N -0.97 -65.05 13.06 21.65 0.28 -64.77 16 23 Si 0.98 49.00 29.55 68.60 2.03 51.02 16 24 H -0.26 -12.11 7.11 99.48 0.71 -11.41 16 25 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 26 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 27 C 0.63 19.68 8.61 178.99 1.54 21.22 16 28 O -0.60 -22.82 17.77 -4.68 -0.08 -22.90 16 29 H 0.14 0.39 8.07 -2.39 -0.02 0.37 16 30 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.29 0.99 8.06 -2.91 -0.02 0.97 16 33 H 0.14 2.48 7.69 -2.39 -0.02 2.47 16 34 H 0.16 2.31 7.92 -2.39 -0.02 2.29 16 35 H 0.11 0.81 5.93 -2.39 -0.01 0.80 16 36 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.11 0.59 8.14 -2.38 -0.02 0.57 16 38 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 40 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.07 1.94 6.63 -2.38 -0.02 1.93 16 43 H 0.05 2.69 6.24 -2.39 -0.01 2.68 16 44 H 0.04 1.83 7.24 -2.38 -0.02 1.82 16 45 H 0.03 1.38 6.29 -2.39 -0.02 1.36 16 46 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.37 23.86 7.67 -92.71 -0.71 23.15 16 48 H 0.25 16.02 8.31 -92.71 -0.77 15.25 16 Total: -1.00 -99.86 386.40 3.24 -96.62 By element: Atomic # 1 Polarization: 29.43 SS G_CDS: 0.26 Total: 29.70 kcal Atomic # 6 Polarization: 26.05 SS G_CDS: 9.46 Total: 35.52 kcal Atomic # 7 Polarization: -156.94 SS G_CDS: -8.40 Total: -165.33 kcal Atomic # 8 Polarization: -47.40 SS G_CDS: -0.12 Total: -47.52 kcal Atomic # 14 Polarization: 49.00 SS G_CDS: 2.03 Total: 51.02 kcal Total: -99.86 3.24 -96.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732511985.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.677 kcal (2) G-P(sol) polarization free energy of solvation -99.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds