Wall clock time and date at job start Tue Mar 31 2020 21:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37365 * 125.82883 * 2 1 4 4 N 1.29403 * 108.82881 * 179.97438 * 3 2 1 5 5 N 1.40169 * 108.13899 * 0.02562 * 4 3 2 6 6 C 1.46502 * 126.35272 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47193 * 270.02411 * 6 5 4 8 8 O 1.21281 * 119.99557 * 359.97438 * 7 6 5 9 9 N 1.34771 * 120.00295 * 179.97438 * 7 6 5 10 10 C 1.46932 * 120.62713 * 354.49336 * 9 7 6 11 11 C 1.53189 * 108.77267 * 126.37020 * 10 9 7 12 12 C 1.53042 * 109.34037 * 54.61873 * 11 10 9 13 13 C 1.53041 * 109.53913 * 298.68280 * 12 11 10 14 14 C 1.46925 * 120.63478 * 174.47455 * 9 7 6 15 15 H 1.09004 * 109.58866 * 113.83891 * 14 9 7 16 16 C 1.53003 * 109.58294 * 353.56137 * 14 9 7 17 17 C 1.52999 * 109.47057 * 181.61746 * 16 14 9 18 18 N 1.46502 * 109.47428 * 185.07347 * 17 16 14 19 19 C 1.36939 * 120.00072 * 179.97438 * 18 17 16 20 20 H 1.07999 * 119.99899 * 0.02562 * 19 18 17 21 21 C 1.38810 * 119.99725 * 179.97438 * 19 18 17 22 22 N 1.31619 * 119.99993 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99685 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46940 * 90.00449 * 23 21 19 25 25 H 1.48507 * 109.47009 * 210.00100 * 23 21 19 26 26 H 1.48493 * 109.47366 * 330.00071 * 23 21 19 27 27 C 1.34817 * 125.83471 * 180.29305 * 2 1 3 28 28 O 1.21811 * 126.30294 * 0.03655 * 27 2 1 29 29 H 1.08996 * 109.47332 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47227 * 120.02500 * 1 2 3 31 31 H 1.09005 * 109.46740 * 240.02232 * 1 2 3 32 32 H 1.07999 * 125.58508 * 359.96765 * 3 2 1 33 33 H 1.08995 * 109.47403 * 150.02145 * 6 5 4 34 34 H 1.09006 * 109.46577 * 30.02004 * 6 5 4 35 35 H 1.08996 * 109.58467 * 6.58508 * 10 9 7 36 36 H 1.09005 * 109.58580 * 246.15654 * 10 9 7 37 37 H 1.08997 * 109.49614 * 174.58390 * 11 10 9 38 38 H 1.08997 * 109.50000 * 294.65357 * 11 10 9 39 39 H 1.09009 * 109.46045 * 58.66921 * 12 11 10 40 40 H 1.08997 * 109.46358 * 178.62463 * 12 11 10 41 41 H 1.09001 * 109.47269 * 301.36360 * 13 12 11 42 42 H 1.09003 * 109.52483 * 181.29926 * 13 12 11 43 43 H 1.09006 * 109.47104 * 301.61511 * 16 14 9 44 44 H 1.08992 * 109.47362 * 61.61574 * 16 14 9 45 45 H 1.09004 * 109.47187 * 305.07706 * 17 16 14 46 46 H 1.09003 * 109.47349 * 65.06950 * 17 16 14 47 47 H 0.97001 * 119.99729 * 359.97438 * 18 17 16 48 48 H 0.97004 * 119.99966 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2691 1.1137 0.0000 4 7 3.5066 0.7354 0.0005 5 7 3.5344 -0.6660 0.0003 6 6 4.7314 -1.5108 0.0013 7 6 5.1435 -1.7998 -1.4192 8 8 4.5003 -1.3452 -2.3415 9 7 6.2266 -2.5632 -1.6646 10 6 7.0847 -3.0212 -0.5633 11 6 7.2253 -4.5442 -0.6484 12 6 7.7302 -4.9296 -2.0408 13 6 6.7178 -4.4776 -3.0957 14 6 6.5716 -2.9538 -3.0383 15 1 7.5127 -2.4852 -3.3261 16 6 5.4628 -2.5057 -3.9927 17 6 5.8052 -2.9490 -5.4164 18 7 4.8069 -2.4168 -6.3472 19 6 4.9080 -2.6844 -7.6863 20 1 5.7234 -3.2882 -8.0563 21 6 3.9617 -2.1805 -8.5681 22 7 2.9677 -1.4451 -8.1171 23 14 4.0991 -2.5462 -10.3948 24 1 3.3605 -3.7963 -10.7062 25 1 3.5171 -1.4212 -11.1700 26 1 5.5288 -2.7118 -10.7603 27 6 2.2543 -1.0930 -0.0056 28 8 1.8807 -2.2523 -0.0121 29 1 -0.3634 1.0276 -0.0005 30 1 -0.3633 -0.5142 -0.8897 31 1 -0.3633 -0.5135 0.8902 32 1 1.9249 2.1374 -0.0005 33 1 4.5145 -2.4477 0.5144 34 1 5.5408 -0.9933 0.5163 35 1 6.6322 -2.7487 0.3901 36 1 8.0678 -2.5581 -0.6493 37 1 7.9358 -4.8866 0.1039 38 1 6.2556 -5.0095 -0.4715 39 1 8.6886 -4.4446 -2.2266 40 1 7.8543 -6.0111 -2.0956 41 1 5.7528 -4.9435 -2.8963 42 1 7.0666 -4.7727 -4.0854 43 1 4.5179 -2.9566 -3.6891 44 1 5.3736 -1.4199 -3.9618 45 1 6.7916 -2.5722 -5.6869 46 1 5.8058 -4.0379 -5.4677 47 1 4.0743 -1.8748 -6.0148 48 1 2.3066 -1.0926 -8.7333 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732511986.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:08 Heat of formation + Delta-G solvation = 45.130520 kcal Electronic energy + Delta-G solvation = -30308.180709 eV Core-core repulsion = 26208.665254 eV Total energy + Delta-G solvation = -4099.515455 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.49636 -40.49773 -37.51056 -37.27684 -35.51994 -35.01584 -33.19275 -32.73872 -31.78325 -30.55452 -28.58437 -27.77966 -27.01205 -24.89013 -24.06014 -23.07063 -22.28198 -21.52538 -20.91756 -20.56105 -19.16188 -17.75526 -17.42283 -16.84740 -16.36454 -16.25318 -16.06792 -15.58256 -15.18757 -14.77476 -14.59359 -14.54174 -14.35316 -13.91980 -13.68831 -13.53939 -13.29668 -13.09141 -12.99861 -12.96463 -12.66663 -12.55597 -12.28302 -12.06250 -11.99644 -11.38077 -11.23772 -11.08128 -10.87793 -10.78999 -10.71872 -10.40553 -10.38586 -10.31574 -10.29585 -9.91905 -9.56194 -8.93864 -8.73840 -8.52690 -8.47597 -6.75593 -5.62243 -2.90307 1.54349 1.85692 2.57844 2.62828 2.89186 3.09820 3.51307 3.55231 3.57776 4.22411 4.30362 4.53785 4.59640 4.68845 4.70482 4.74345 4.81760 4.86415 5.02650 5.03533 5.18472 5.20679 5.21792 5.31313 5.38426 5.58143 5.62724 5.68917 5.69297 5.78421 5.80733 5.93124 5.98762 6.02650 6.16467 6.28605 6.36964 6.43165 6.45451 6.61635 6.71799 7.12501 7.22664 7.41565 7.49338 7.80875 7.95937 8.24971 8.56695 9.66970 10.29571 10.64391 11.60873 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008517 B = 0.003648 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3286.921923 B = 7672.905646 C =10330.051826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.561 5.561 3 C 0.257 3.743 4 N -0.275 5.275 5 N -0.438 5.438 6 C 0.144 3.856 7 C 0.493 3.507 8 O -0.498 6.498 9 N -0.609 5.609 10 C 0.106 3.894 11 C -0.136 4.136 12 C -0.120 4.120 13 C -0.134 4.134 14 C 0.155 3.845 15 H 0.072 0.928 16 C -0.116 4.116 17 C 0.149 3.851 18 N -0.731 5.731 19 C -0.236 4.236 20 H 0.069 0.931 21 C -0.017 4.017 22 N -0.933 5.933 23 Si 0.906 3.094 24 H -0.291 1.291 25 H -0.292 1.292 26 H -0.282 1.282 27 C 0.653 3.347 28 O -0.551 6.551 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.231 0.769 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.082 0.918 43 H 0.065 0.935 44 H 0.092 0.908 45 H 0.012 0.988 46 H 0.015 0.985 47 H 0.385 0.615 48 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.329 2.001 26.444 26.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.290 5.290 3 C -0.042 4.042 4 N -0.096 5.096 5 N -0.258 5.258 6 C 0.018 3.982 7 C 0.278 3.722 8 O -0.371 6.371 9 N -0.345 5.345 10 C -0.017 4.017 11 C -0.175 4.175 12 C -0.157 4.157 13 C -0.172 4.172 14 C 0.052 3.948 15 H 0.090 0.910 16 C -0.154 4.154 17 C 0.021 3.979 18 N -0.375 5.375 19 C -0.367 4.367 20 H 0.087 0.913 21 C -0.213 4.213 22 N -0.582 5.582 23 Si 0.737 3.263 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.208 1.208 27 C 0.353 3.647 28 O -0.424 6.424 29 H 0.112 0.888 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.247 0.753 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.101 0.899 43 H 0.083 0.917 44 H 0.110 0.890 45 H 0.030 0.970 46 H 0.033 0.967 47 H 0.219 0.781 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 4.773 1.615 25.785 26.273 hybrid contribution -0.905 -0.245 -0.994 1.366 sum 3.868 1.371 24.791 25.129 Atomic orbital electron populations 1.21812 0.74054 1.04160 1.04019 1.45852 1.08906 1.06620 1.67612 1.25926 0.85786 0.94720 0.97767 1.76961 1.18293 0.91362 1.22978 1.48187 1.05369 1.03182 1.69068 1.21299 0.85640 0.94974 0.96291 1.20851 0.80824 0.79172 0.91368 1.90890 1.52892 1.49424 1.43901 1.48150 1.26622 1.51599 1.08107 1.21769 0.95235 0.95237 0.89454 1.21934 1.02207 0.95237 0.98086 1.21530 0.98863 1.01081 0.94245 1.22066 0.99954 0.95330 0.99851 1.21322 0.99177 0.94313 0.79968 0.90986 1.22231 0.96408 1.03633 0.93141 1.20783 0.92667 0.95713 0.88715 1.42367 1.29620 1.62147 1.03380 1.19256 1.07770 1.26021 0.83667 0.91311 1.24747 0.97759 1.00796 0.97959 1.69694 1.15459 1.39482 1.33584 0.86194 0.77262 0.77215 0.85580 1.21821 1.21825 1.20817 1.16626 0.81871 0.85088 0.81153 1.91088 1.77639 1.15311 1.58322 0.88830 0.90232 0.90573 0.75275 0.86181 0.86168 0.90201 0.90893 0.90770 0.91320 0.91776 0.91671 0.91406 0.89907 0.91658 0.89008 0.96977 0.96745 0.78144 0.93661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.73 11.08 59.85 0.66 1.39 16 2 N -0.56 -6.26 3.14 -130.10 -0.41 -6.67 16 3 C 0.26 2.34 12.61 -89.11 -1.12 1.21 16 4 N -0.28 -3.41 12.53 29.87 0.37 -3.04 16 5 N -0.44 -6.13 3.11 -66.31 -0.21 -6.33 16 6 C 0.14 1.65 5.22 -5.19 -0.03 1.63 16 7 C 0.49 7.45 7.60 -10.99 -0.08 7.37 16 8 O -0.50 -10.11 11.98 5.56 0.07 -10.04 16 9 N -0.61 -7.73 2.97 -165.22 -0.49 -8.22 16 10 C 0.11 0.84 6.35 -3.71 -0.02 0.82 16 11 C -0.14 -1.05 6.08 -26.61 -0.16 -1.21 16 12 C -0.12 -1.11 5.89 -26.69 -0.16 -1.26 16 13 C -0.13 -1.72 4.83 -26.61 -0.13 -1.85 16 14 C 0.15 2.29 3.02 -67.60 -0.20 2.09 16 15 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 16 C -0.12 -2.33 3.29 -26.73 -0.09 -2.42 16 17 C 0.15 3.40 5.74 -4.04 -0.02 3.38 16 18 N -0.73 -20.94 5.60 -59.90 -0.34 -21.28 16 19 C -0.24 -7.17 9.99 -15.06 -0.15 -7.32 16 20 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 21 C -0.02 -0.52 5.50 -17.43 -0.10 -0.62 16 22 N -0.93 -30.41 13.06 55.49 0.72 -29.68 16 23 Si 0.91 23.68 29.55 -169.99 -5.02 18.65 16 24 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 25 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 26 H -0.28 -7.13 7.11 56.52 0.40 -6.72 16 27 C 0.65 10.10 8.61 -86.73 -0.75 9.36 16 28 O -0.55 -10.34 17.77 5.09 0.09 -10.25 16 29 H 0.09 0.29 8.07 -51.93 -0.42 -0.12 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.23 0.75 8.06 -52.49 -0.42 0.33 16 33 H 0.12 1.18 7.89 -51.93 -0.41 0.77 16 34 H 0.12 0.96 7.72 -51.93 -0.40 0.56 16 35 H 0.08 0.44 5.93 -51.93 -0.31 0.13 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.08 1.11 6.87 -51.93 -0.36 0.76 16 43 H 0.06 1.47 7.24 -51.93 -0.38 1.09 16 44 H 0.09 2.09 6.23 -51.93 -0.32 1.76 16 45 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 46 H 0.01 0.33 6.85 -51.93 -0.36 -0.03 16 47 H 0.38 11.86 7.67 -40.82 -0.31 11.55 16 48 H 0.25 7.91 8.31 -40.82 -0.34 7.57 16 LS Contribution 386.92 15.07 5.83 5.83 Total: -1.00 -42.57 386.92 -9.19 -51.76 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -7.46 Total: 6.73 kcal Atomic # 6 Polarization: 14.89 SS G_CDS: -2.35 Total: 12.54 kcal Atomic # 7 Polarization: -74.88 SS G_CDS: -0.34 Total: -75.22 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: 0.16 Total: -20.29 kcal Atomic # 14 Polarization: 23.68 SS G_CDS: -5.02 Total: 18.65 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -42.57 -9.19 -51.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732511986.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.892 kcal (2) G-P(sol) polarization free energy of solvation -42.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds