Wall clock time and date at job start Tue Mar 31 2020 21:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37365 * 125.82883 * 2 1 4 4 N 1.29403 * 108.82881 * 179.97438 * 3 2 1 5 5 N 1.40169 * 108.13899 * 0.02562 * 4 3 2 6 6 C 1.46502 * 126.35272 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47193 * 270.02411 * 6 5 4 8 8 O 1.21281 * 119.99557 * 359.97438 * 7 6 5 9 9 N 1.34771 * 120.00295 * 179.97438 * 7 6 5 10 10 C 1.46932 * 120.62713 * 354.49336 * 9 7 6 11 11 C 1.53189 * 108.77267 * 126.37020 * 10 9 7 12 12 C 1.53042 * 109.34037 * 54.61873 * 11 10 9 13 13 C 1.53041 * 109.53913 * 298.68280 * 12 11 10 14 14 C 1.46925 * 120.63478 * 174.47455 * 9 7 6 15 15 H 1.09004 * 109.58866 * 113.83891 * 14 9 7 16 16 C 1.53003 * 109.58294 * 353.56137 * 14 9 7 17 17 C 1.52999 * 109.47057 * 181.61746 * 16 14 9 18 18 N 1.46502 * 109.47428 * 185.07347 * 17 16 14 19 19 C 1.36939 * 120.00072 * 179.97438 * 18 17 16 20 20 H 1.07999 * 119.99899 * 0.02562 * 19 18 17 21 21 C 1.38810 * 119.99725 * 179.97438 * 19 18 17 22 22 N 1.31619 * 119.99993 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99685 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46940 * 90.00449 * 23 21 19 25 25 H 1.48507 * 109.47009 * 210.00100 * 23 21 19 26 26 H 1.48493 * 109.47366 * 330.00071 * 23 21 19 27 27 C 1.34817 * 125.83471 * 180.29305 * 2 1 3 28 28 O 1.21811 * 126.30294 * 0.03655 * 27 2 1 29 29 H 1.08996 * 109.47332 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47227 * 120.02500 * 1 2 3 31 31 H 1.09005 * 109.46740 * 240.02232 * 1 2 3 32 32 H 1.07999 * 125.58508 * 359.96765 * 3 2 1 33 33 H 1.08995 * 109.47403 * 150.02145 * 6 5 4 34 34 H 1.09006 * 109.46577 * 30.02004 * 6 5 4 35 35 H 1.08996 * 109.58467 * 6.58508 * 10 9 7 36 36 H 1.09005 * 109.58580 * 246.15654 * 10 9 7 37 37 H 1.08997 * 109.49614 * 174.58390 * 11 10 9 38 38 H 1.08997 * 109.50000 * 294.65357 * 11 10 9 39 39 H 1.09009 * 109.46045 * 58.66921 * 12 11 10 40 40 H 1.08997 * 109.46358 * 178.62463 * 12 11 10 41 41 H 1.09001 * 109.47269 * 301.36360 * 13 12 11 42 42 H 1.09003 * 109.52483 * 181.29926 * 13 12 11 43 43 H 1.09006 * 109.47104 * 301.61511 * 16 14 9 44 44 H 1.08992 * 109.47362 * 61.61574 * 16 14 9 45 45 H 1.09004 * 109.47187 * 305.07706 * 17 16 14 46 46 H 1.09003 * 109.47349 * 65.06950 * 17 16 14 47 47 H 0.97001 * 119.99729 * 359.97438 * 18 17 16 48 48 H 0.97004 * 119.99966 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2691 1.1137 0.0000 4 7 3.5066 0.7354 0.0005 5 7 3.5344 -0.6660 0.0003 6 6 4.7314 -1.5108 0.0013 7 6 5.1435 -1.7998 -1.4192 8 8 4.5003 -1.3452 -2.3415 9 7 6.2266 -2.5632 -1.6646 10 6 7.0847 -3.0212 -0.5633 11 6 7.2253 -4.5442 -0.6484 12 6 7.7302 -4.9296 -2.0408 13 6 6.7178 -4.4776 -3.0957 14 6 6.5716 -2.9538 -3.0383 15 1 7.5127 -2.4852 -3.3261 16 6 5.4628 -2.5057 -3.9927 17 6 5.8052 -2.9490 -5.4164 18 7 4.8069 -2.4168 -6.3472 19 6 4.9080 -2.6844 -7.6863 20 1 5.7234 -3.2882 -8.0563 21 6 3.9617 -2.1805 -8.5681 22 7 2.9677 -1.4451 -8.1171 23 14 4.0991 -2.5462 -10.3948 24 1 3.3605 -3.7963 -10.7062 25 1 3.5171 -1.4212 -11.1700 26 1 5.5288 -2.7118 -10.7603 27 6 2.2543 -1.0930 -0.0056 28 8 1.8807 -2.2523 -0.0121 29 1 -0.3634 1.0276 -0.0005 30 1 -0.3633 -0.5142 -0.8897 31 1 -0.3633 -0.5135 0.8902 32 1 1.9249 2.1374 -0.0005 33 1 4.5145 -2.4477 0.5144 34 1 5.5408 -0.9933 0.5163 35 1 6.6322 -2.7487 0.3901 36 1 8.0678 -2.5581 -0.6493 37 1 7.9358 -4.8866 0.1039 38 1 6.2556 -5.0095 -0.4715 39 1 8.6886 -4.4446 -2.2266 40 1 7.8543 -6.0111 -2.0956 41 1 5.7528 -4.9435 -2.8963 42 1 7.0666 -4.7727 -4.0854 43 1 4.5179 -2.9566 -3.6891 44 1 5.3736 -1.4199 -3.9618 45 1 6.7916 -2.5722 -5.6869 46 1 5.8058 -4.0379 -5.4677 47 1 4.0743 -1.8748 -6.0148 48 1 2.3066 -1.0926 -8.7333 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732511986.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:06 Heat of formation + Delta-G solvation = 14.240279 kcal Electronic energy + Delta-G solvation = -30309.520211 eV Core-core repulsion = 26208.665254 eV Total energy + Delta-G solvation = -4100.854957 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.43120 -41.61688 -38.60517 -38.43556 -37.06946 -36.26116 -34.70367 -33.91438 -32.88003 -32.29418 -29.51770 -29.29244 -27.85914 -26.28676 -25.38611 -24.37490 -23.55864 -22.57019 -22.15303 -21.77405 -20.19773 -19.27866 -18.66003 -18.26240 -17.45403 -17.22656 -17.12586 -16.76955 -16.55741 -16.20455 -15.72739 -15.60161 -15.47602 -15.29876 -15.05677 -14.84019 -14.56631 -14.43961 -14.14905 -14.01040 -13.56788 -13.51864 -13.39782 -13.29744 -12.96207 -12.95325 -12.81049 -12.73824 -12.37067 -12.15954 -11.96837 -11.93387 -11.79282 -11.56631 -11.43897 -11.43136 -11.26583 -10.97867 -10.17475 -9.60960 -9.60246 -9.07069 -7.98832 -5.30676 0.64835 1.06831 1.41733 1.46457 1.48985 1.54319 1.55000 1.94148 2.27215 2.52353 3.32801 3.33361 3.42964 3.73027 3.81778 3.90482 4.02112 4.06473 4.07494 4.09882 4.11572 4.22536 4.37207 4.39352 4.44636 4.44774 4.55429 4.67054 4.70796 4.75216 4.75281 4.87412 4.89169 4.94867 4.97670 5.10791 5.15208 5.23500 5.33297 5.35867 5.44638 5.48864 5.63771 5.67479 6.21690 6.35883 6.58435 6.89500 7.13169 7.25701 8.01304 8.26857 9.25763 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008517 B = 0.003648 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3286.921923 B = 7672.905646 C =10330.051826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.561 5.561 3 C 0.276 3.724 4 N -0.308 5.308 5 N -0.445 5.445 6 C 0.144 3.856 7 C 0.482 3.518 8 O -0.564 6.564 9 N -0.604 5.604 10 C 0.097 3.903 11 C -0.133 4.133 12 C -0.114 4.114 13 C -0.130 4.130 14 C 0.159 3.841 15 H 0.086 0.914 16 C -0.091 4.091 17 C 0.150 3.850 18 N -0.750 5.750 19 C -0.251 4.251 20 H 0.080 0.920 21 C -0.082 4.082 22 N -0.976 5.976 23 Si 0.985 3.015 24 H -0.284 1.284 25 H -0.292 1.292 26 H -0.264 1.264 27 C 0.629 3.371 28 O -0.601 6.601 29 H 0.143 0.857 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.289 0.711 33 H 0.136 0.864 34 H 0.161 0.839 35 H 0.110 0.890 36 H 0.097 0.903 37 H 0.110 0.890 38 H 0.055 0.945 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.044 0.956 42 H 0.074 0.926 43 H 0.028 0.972 44 H 0.061 0.939 45 H 0.023 0.977 46 H 0.022 0.978 47 H 0.367 0.633 48 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.402 2.314 28.017 28.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.288 5.288 3 C -0.022 4.022 4 N -0.129 5.129 5 N -0.263 5.263 6 C 0.020 3.980 7 C 0.270 3.730 8 O -0.442 6.442 9 N -0.338 5.338 10 C -0.024 4.024 11 C -0.171 4.171 12 C -0.152 4.152 13 C -0.168 4.168 14 C 0.056 3.944 15 H 0.104 0.896 16 C -0.129 4.129 17 C 0.023 3.977 18 N -0.392 5.392 19 C -0.383 4.383 20 H 0.098 0.902 21 C -0.273 4.273 22 N -0.626 5.626 23 Si 0.812 3.188 24 H -0.211 1.211 25 H -0.218 1.218 26 H -0.189 1.189 27 C 0.328 3.672 28 O -0.478 6.478 29 H 0.161 0.839 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.304 0.696 33 H 0.154 0.846 34 H 0.179 0.821 35 H 0.128 0.872 36 H 0.115 0.885 37 H 0.128 0.872 38 H 0.074 0.926 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.063 0.937 42 H 0.092 0.908 43 H 0.047 0.953 44 H 0.079 0.921 45 H 0.041 0.959 46 H 0.040 0.960 47 H 0.198 0.802 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 6.922 1.917 27.414 28.339 hybrid contribution -1.564 -0.305 -1.431 2.142 sum 5.358 1.612 25.983 26.579 Atomic orbital electron populations 1.22144 0.71963 1.07226 1.03326 1.46134 1.10226 1.06098 1.66327 1.27137 0.84585 0.96088 0.94367 1.76957 1.20223 0.90272 1.25499 1.48427 1.05372 1.04157 1.68382 1.21543 0.86336 0.96215 0.93948 1.21598 0.80563 0.78512 0.92374 1.90866 1.55008 1.52258 1.46081 1.48263 1.26552 1.50551 1.08418 1.22228 0.95638 0.95646 0.88843 1.21948 1.02463 0.94762 0.97908 1.21525 0.98066 1.01875 0.93711 1.22007 1.00201 0.93491 1.01138 1.21141 0.97134 0.95768 0.80392 0.89623 1.21869 0.96857 1.01217 0.92973 1.20957 0.91612 0.95770 0.89338 1.42663 1.30263 1.62276 1.04003 1.19739 1.08057 1.25852 0.84635 0.90199 1.25769 0.97394 1.00824 1.03348 1.69896 1.16472 1.40919 1.35347 0.84982 0.78106 0.76851 0.78845 1.21127 1.21821 1.18859 1.17103 0.83012 0.85488 0.81573 1.91020 1.78634 1.17430 1.60751 0.83865 0.92363 0.89900 0.69610 0.84644 0.82118 0.87196 0.88512 0.87208 0.92632 0.90176 0.90586 0.93686 0.90755 0.95276 0.92060 0.95924 0.95980 0.80214 0.93939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.28 11.08 127.77 1.42 2.69 16 2 N -0.56 -12.34 3.14 -683.68 -2.15 -14.49 16 3 C 0.28 4.53 12.61 179.82 2.27 6.79 16 4 N -0.31 -7.41 12.53 -59.41 -0.74 -8.16 16 5 N -0.44 -12.59 3.11 -481.77 -1.50 -14.09 16 6 C 0.14 3.25 5.22 85.63 0.45 3.70 16 7 C 0.48 15.03 7.60 87.66 0.67 15.69 16 8 O -0.56 -24.67 11.98 -3.03 -0.04 -24.71 16 9 N -0.60 -15.02 2.97 -795.02 -2.36 -17.39 16 10 C 0.10 1.24 6.35 86.36 0.55 1.78 16 11 C -0.13 -1.61 6.08 30.67 0.19 -1.43 16 12 C -0.11 -1.82 5.89 30.62 0.18 -1.64 16 13 C -0.13 -3.33 4.83 30.67 0.15 -3.19 16 14 C 0.16 4.76 3.02 44.98 0.14 4.90 16 15 H 0.09 2.35 8.14 -2.38 -0.02 2.33 16 16 C -0.09 -3.91 3.29 30.60 0.10 -3.81 16 17 C 0.15 7.12 5.74 86.38 0.50 7.62 16 18 N -0.75 -45.00 5.60 -343.44 -1.92 -46.92 16 19 C -0.25 -15.63 9.99 84.03 0.84 -14.79 16 20 H 0.08 4.67 7.83 -2.91 -0.02 4.65 16 21 C -0.08 -5.13 5.50 84.86 0.47 -4.66 16 22 N -0.98 -65.70 13.06 21.65 0.28 -65.42 16 23 Si 0.98 49.29 29.55 68.60 2.03 51.32 16 24 H -0.28 -13.87 7.11 99.48 0.71 -13.17 16 25 H -0.29 -14.51 7.11 99.48 0.71 -13.80 16 26 H -0.26 -12.31 7.11 99.48 0.71 -11.60 16 27 C 0.63 20.25 8.61 178.99 1.54 21.80 16 28 O -0.60 -24.09 17.77 -4.70 -0.08 -24.17 16 29 H 0.14 0.46 8.07 -2.39 -0.02 0.44 16 30 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.29 0.71 8.06 -2.91 -0.02 0.68 16 33 H 0.14 2.57 7.89 -2.39 -0.02 2.55 16 34 H 0.16 2.17 7.72 -2.38 -0.02 2.15 16 35 H 0.11 0.77 5.93 -2.39 -0.01 0.76 16 36 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 37 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 40 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.07 2.00 6.87 -2.39 -0.02 1.98 16 43 H 0.03 1.43 7.24 -2.38 -0.02 1.41 16 44 H 0.06 3.02 6.23 -2.39 -0.01 3.01 16 45 H 0.02 1.04 8.14 -2.38 -0.02 1.02 16 46 H 0.02 1.03 6.85 -2.39 -0.02 1.01 16 47 H 0.37 24.16 7.67 -92.71 -0.71 23.45 16 48 H 0.25 16.20 8.31 -92.71 -0.77 15.43 16 Total: -1.00 -101.66 386.92 3.21 -98.44 By element: Atomic # 1 Polarization: 29.85 SS G_CDS: 0.26 Total: 30.12 kcal Atomic # 6 Polarization: 26.02 SS G_CDS: 9.44 Total: 35.46 kcal Atomic # 7 Polarization: -158.07 SS G_CDS: -8.40 Total: -166.46 kcal Atomic # 8 Polarization: -48.76 SS G_CDS: -0.12 Total: -48.88 kcal Atomic # 14 Polarization: 49.29 SS G_CDS: 2.03 Total: 51.32 kcal Total: -101.66 3.21 -98.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732511986.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.683 kcal (2) G-P(sol) polarization free energy of solvation -101.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds