Wall clock time and date at job start Tue Mar 31 2020 21:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 113.99853 * 2 1 4 4 C 1.52999 * 109.46990 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47143 * 179.97438 * 4 3 2 6 6 C 1.34816 * 126.59239 * 125.33054 * 5 4 3 7 7 C 1.36596 * 106.83598 * 180.15057 * 6 5 4 8 8 C 1.47521 * 125.77041 * 179.83903 * 7 6 5 9 9 O 1.21603 * 119.99881 * 359.72336 * 8 7 6 10 10 N 1.34773 * 120.00175 * 179.97438 * 8 7 6 11 11 C 1.46505 * 120.00095 * 179.72702 * 10 8 7 12 12 H 1.08997 * 110.01493 * 325.06245 * 11 10 8 13 13 C 1.54261 * 110.03417 * 86.45603 * 11 10 8 14 14 C 1.54884 * 104.19924 * 142.89284 * 13 11 10 15 15 C 1.54891 * 102.74823 * 322.06025 * 14 13 11 16 16 C 1.53880 * 110.03191 * 203.62417 * 11 10 8 17 17 H 1.08995 * 110.03121 * 121.42674 * 16 11 10 18 18 C 1.53001 * 110.03064 * 0.02562 * 16 11 10 19 19 N 1.46497 * 109.46903 * 175.00269 * 18 16 11 20 20 C 1.36941 * 120.00130 * 179.97438 * 19 18 16 21 21 H 1.08000 * 119.99707 * 0.02562 * 20 19 18 22 22 C 1.38813 * 120.00336 * 179.97438 * 20 19 18 23 23 N 1.31620 * 119.99820 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00036 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47319 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47035 * 119.99899 * 24 22 20 27 27 H 1.48506 * 109.46976 * 239.99827 * 24 22 20 28 28 N 1.34402 * 108.45863 * 359.58403 * 7 6 5 29 29 N 1.28764 * 109.52358 * 0.25694 * 28 7 6 30 30 H 1.08997 * 109.47478 * 60.00091 * 1 2 3 31 31 H 1.09001 * 109.47056 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47223 * 299.99413 * 1 2 3 33 33 H 1.08994 * 109.46846 * 60.00190 * 3 2 1 34 34 H 1.09002 * 109.46847 * 300.00366 * 3 2 1 35 35 H 1.08997 * 109.47449 * 59.99621 * 4 3 2 36 36 H 1.09005 * 109.46827 * 300.00021 * 4 3 2 37 37 H 1.08003 * 126.58450 * 0.02562 * 6 5 4 38 38 H 0.97000 * 120.00112 * 359.73137 * 10 8 7 39 39 H 1.08997 * 110.48929 * 261.57698 * 13 11 10 40 40 H 1.09008 * 110.48330 * 24.08235 * 13 11 10 41 41 H 1.09003 * 110.75441 * 80.37117 * 14 13 11 42 42 H 1.08998 * 110.76192 * 203.74562 * 14 13 11 43 43 H 1.09000 * 110.48667 * 156.61923 * 15 14 13 44 44 H 1.08998 * 110.48785 * 279.13026 * 15 14 13 45 45 H 1.09003 * 109.47214 * 294.99699 * 18 16 11 46 46 H 1.08998 * 109.47529 * 54.99678 * 18 16 11 47 47 H 0.97005 * 120.00380 * 359.97438 * 19 18 16 48 48 H 0.96993 * 119.99844 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.1313 2.5231 -0.0013 6 6 5.0304 3.0029 0.8813 7 6 5.3066 4.2869 0.5061 8 6 6.2393 5.2032 1.1894 9 8 6.8370 4.8337 2.1818 10 7 6.4250 6.4516 0.7167 11 6 7.3467 7.3636 1.3987 12 1 7.3128 7.1925 2.4746 13 6 8.7824 7.1532 0.8750 14 6 9.3889 8.5780 0.8463 15 6 8.1954 9.4483 0.3801 16 6 6.9734 8.8229 1.0840 17 1 6.7586 9.3607 2.0074 18 6 5.7562 8.8645 0.1580 19 7 5.3388 10.2551 -0.0376 20 6 4.2628 10.5413 -0.8348 21 1 3.7217 9.7419 -1.3190 22 6 3.8669 11.8589 -1.0198 23 7 4.5261 12.8332 -0.4293 24 14 2.3987 12.2492 -2.1067 25 1 1.8357 10.9871 -2.6502 26 1 1.3626 12.9497 -1.3061 27 1 2.8311 13.1212 -3.2283 28 7 4.5893 4.5725 -0.5940 29 7 3.8806 3.5491 -0.9233 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 1.6886 1.8463 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.8567 0.6439 -0.8908 36 1 3.8573 0.6436 0.8892 37 1 5.4501 2.4743 1.7244 38 1 5.9484 6.7463 -0.0751 39 1 9.3458 6.5123 1.5532 40 1 8.7639 6.7240 -0.1268 41 1 9.7197 8.8771 1.8409 42 1 10.2101 8.6341 0.1318 43 1 8.3304 10.4823 0.6972 44 1 8.0835 9.3938 -0.7028 45 1 6.0169 8.4246 -0.8047 46 1 4.9391 8.2994 0.6063 47 1 5.8246 10.9731 0.3976 48 1 4.2493 13.7538 -0.5582 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732614574.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:19 Heat of formation + Delta-G solvation = 28.097922 kcal Electronic energy + Delta-G solvation = -28885.177062 eV Core-core repulsion = 24784.923018 eV Total energy + Delta-G solvation = -4100.254044 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.43303 -39.86754 -38.60117 -37.84885 -35.27763 -34.31045 -33.50628 -31.40083 -31.35130 -30.29425 -28.51805 -27.55249 -26.88906 -24.55956 -24.47178 -23.59893 -22.42073 -22.08091 -20.71061 -20.32569 -18.93765 -18.42539 -17.33270 -16.99654 -16.88037 -16.25539 -16.17610 -15.77266 -15.46339 -15.15086 -14.79137 -14.62595 -14.53912 -14.42125 -13.96539 -13.65758 -13.46073 -12.98687 -12.88017 -12.79487 -12.57377 -12.17590 -12.11573 -11.95055 -11.59259 -11.42751 -11.24725 -10.83749 -10.78623 -10.75684 -10.68400 -10.43892 -10.34465 -10.33261 -10.23265 -10.06600 -9.87528 -9.63868 -9.52127 -8.91518 -8.78056 -6.87960 -5.72584 -3.00784 0.87540 1.57524 1.60464 3.13912 3.21813 3.29494 3.46618 3.52698 3.54956 3.95816 4.06137 4.22353 4.49978 4.55533 4.61595 4.70504 4.76310 4.79429 4.83406 4.87969 4.89323 5.01971 5.15417 5.16586 5.20493 5.51121 5.56008 5.59409 5.70277 5.72700 5.81951 5.90639 5.99163 6.00965 6.10227 6.23732 6.28167 6.35169 6.42248 6.52583 6.64939 6.66779 6.79033 6.88819 7.53788 7.76080 7.81866 8.25077 8.46416 9.57958 10.15310 10.50321 11.50403 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008537 B = 0.002844 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3279.024698 B = 9842.152202 C =12782.732387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.390 6.390 3 C 0.049 3.951 4 C 0.127 3.873 5 N -0.365 5.365 6 C 0.096 3.904 7 C -0.098 4.098 8 C 0.603 3.397 9 O -0.547 6.547 10 N -0.703 5.703 11 C 0.149 3.851 12 H 0.091 0.909 13 C -0.132 4.132 14 C -0.124 4.124 15 C -0.112 4.112 16 C -0.108 4.108 17 H 0.083 0.917 18 C 0.156 3.844 19 N -0.728 5.728 20 C -0.236 4.236 21 H 0.071 0.929 22 C -0.015 4.015 23 N -0.934 5.934 24 Si 0.905 3.095 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.292 1.292 28 N -0.194 5.194 29 N -0.062 5.062 30 H 0.047 0.953 31 H 0.091 0.909 32 H 0.045 0.955 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.108 0.892 36 H 0.114 0.886 37 H 0.206 0.794 38 H 0.416 0.584 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.020 0.980 46 H 0.022 0.978 47 H 0.384 0.616 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.461 -25.973 3.849 26.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.308 6.308 3 C -0.029 4.029 4 C 0.005 3.995 5 N -0.151 5.151 6 C -0.060 4.060 7 C -0.237 4.237 8 C 0.387 3.613 9 O -0.424 6.424 10 N -0.355 5.355 11 C 0.044 3.956 12 H 0.109 0.891 13 C -0.170 4.170 14 C -0.162 4.162 15 C -0.149 4.149 16 C -0.127 4.127 17 H 0.101 0.899 18 C 0.028 3.972 19 N -0.372 5.372 20 C -0.367 4.367 21 H 0.089 0.911 22 C -0.211 4.211 23 N -0.583 5.583 24 Si 0.737 3.263 25 H -0.205 1.205 26 H -0.220 1.220 27 H -0.219 1.219 28 N -0.068 5.068 29 N -0.042 5.042 30 H 0.065 0.935 31 H 0.110 0.890 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.126 0.874 36 H 0.133 0.867 37 H 0.223 0.777 38 H 0.256 0.744 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.038 0.962 46 H 0.040 0.960 47 H 0.218 0.782 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.027 -26.050 3.182 26.264 hybrid contribution -0.754 0.448 0.033 0.878 sum 0.273 -25.602 3.214 25.804 Atomic orbital electron populations 1.22813 0.79568 1.03263 1.00666 1.87766 1.20874 1.26468 1.95661 1.22635 0.91843 0.85798 1.02639 1.21671 0.93268 0.78034 1.06525 1.50319 1.30445 1.13591 1.20722 1.23371 0.92057 0.94897 0.95691 1.21566 1.07279 0.95497 0.99338 1.16759 0.80122 0.81471 0.82984 1.90782 1.49480 1.76377 1.25771 1.46246 1.45309 1.12003 1.31988 1.21720 0.88062 0.88397 0.97419 0.89119 1.22767 0.95249 0.97520 1.01496 1.22488 0.97909 0.94642 1.01176 1.22361 0.92711 0.99016 1.00851 1.22222 0.96757 0.93279 1.00432 0.89863 1.20699 0.92694 0.88902 0.94918 1.42321 1.35629 1.01078 1.58195 1.19294 1.04908 0.91885 1.20652 0.91085 1.24727 0.99650 0.95685 1.00994 1.69669 1.42068 0.98835 1.47689 0.86132 0.82374 0.77891 0.79934 1.20502 1.21956 1.21918 1.74734 1.03465 1.18609 1.10014 1.82050 1.20169 0.90462 1.11529 0.93463 0.89024 0.93625 0.92194 0.91099 0.87358 0.86748 0.77702 0.74424 0.91411 0.91262 0.91535 0.91637 0.91175 0.90948 0.96244 0.95992 0.78189 0.93640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.28 16 2 O -0.39 -2.70 10.70 -35.23 -0.38 -3.08 16 3 C 0.05 0.32 6.14 37.16 0.23 0.55 16 4 C 0.13 0.71 6.91 -4.04 -0.03 0.68 16 5 N -0.36 -3.35 3.69 -61.06 -0.23 -3.58 16 6 C 0.10 0.92 11.27 -16.83 -0.19 0.73 16 7 C -0.10 -1.29 6.99 -83.55 -0.58 -1.88 16 8 C 0.60 8.90 7.81 -12.48 -0.10 8.80 16 9 O -0.55 -8.85 16.54 5.27 0.09 -8.76 16 10 N -0.70 -10.46 4.42 -53.76 -0.24 -10.70 16 11 C 0.15 2.16 3.21 -66.81 -0.21 1.94 16 12 H 0.09 1.34 7.61 -51.93 -0.39 0.95 16 13 C -0.13 -1.69 6.53 -25.08 -0.16 -1.85 16 14 C -0.12 -1.53 6.91 -24.74 -0.17 -1.70 16 15 C -0.11 -1.70 6.08 -25.07 -0.15 -1.86 16 16 C -0.11 -1.75 2.96 -89.50 -0.26 -2.02 16 17 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 18 C 0.16 3.13 4.18 -4.04 -0.02 3.11 16 19 N -0.73 -18.42 5.45 -59.91 -0.33 -18.74 16 20 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 21 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 22 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 23 N -0.93 -28.42 13.06 55.49 0.72 -27.70 16 24 Si 0.91 22.77 29.55 -169.99 -5.02 17.75 16 25 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 27 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 28 N -0.19 -2.85 12.04 32.85 0.40 -2.45 16 29 N -0.06 -0.80 13.65 60.35 0.82 0.02 16 30 H 0.05 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.11 0.34 8.08 -51.93 -0.42 -0.08 16 37 H 0.21 1.24 8.06 -52.48 -0.42 0.82 16 38 H 0.42 6.48 5.52 -40.82 -0.23 6.25 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.07 0.90 8.05 -51.92 -0.42 0.48 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.07 1.20 7.77 -51.93 -0.40 0.80 16 45 H 0.02 0.40 7.12 -51.93 -0.37 0.03 16 46 H 0.02 0.46 7.40 -51.93 -0.38 0.08 16 47 H 0.38 10.18 7.55 -40.82 -0.31 9.87 16 48 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 398.77 15.07 6.01 6.01 Total: -1.00 -34.46 398.77 -6.48 -40.95 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -7.54 Total: 9.87 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: -0.79 Total: 0.42 kcal Atomic # 7 Polarization: -64.31 SS G_CDS: 1.15 Total: -63.15 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: -0.29 Total: -11.84 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.46 -6.48 -40.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732614574.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.043 kcal (2) G-P(sol) polarization free energy of solvation -34.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds