Wall clock time and date at job start Tue Mar 31 2020 21:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 113.99853 * 2 1 4 4 C 1.52999 * 109.46990 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47143 * 179.97438 * 4 3 2 6 6 C 1.34816 * 126.59239 * 125.33054 * 5 4 3 7 7 C 1.36596 * 106.83598 * 180.15057 * 6 5 4 8 8 C 1.47521 * 125.77041 * 179.83903 * 7 6 5 9 9 O 1.21603 * 119.99881 * 359.72336 * 8 7 6 10 10 N 1.34773 * 120.00175 * 179.97438 * 8 7 6 11 11 C 1.46505 * 120.00095 * 179.72702 * 10 8 7 12 12 H 1.08997 * 110.01493 * 325.06245 * 11 10 8 13 13 C 1.54261 * 110.03417 * 86.45603 * 11 10 8 14 14 C 1.54884 * 104.19924 * 142.89284 * 13 11 10 15 15 C 1.54891 * 102.74823 * 322.06025 * 14 13 11 16 16 C 1.53880 * 110.03191 * 203.62417 * 11 10 8 17 17 H 1.08995 * 110.03121 * 121.42674 * 16 11 10 18 18 C 1.53001 * 110.03064 * 0.02562 * 16 11 10 19 19 N 1.46497 * 109.46903 * 175.00269 * 18 16 11 20 20 C 1.36941 * 120.00130 * 179.97438 * 19 18 16 21 21 H 1.08000 * 119.99707 * 0.02562 * 20 19 18 22 22 C 1.38813 * 120.00336 * 179.97438 * 20 19 18 23 23 N 1.31620 * 119.99820 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00036 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47319 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47035 * 119.99899 * 24 22 20 27 27 H 1.48506 * 109.46976 * 239.99827 * 24 22 20 28 28 N 1.34402 * 108.45863 * 359.58403 * 7 6 5 29 29 N 1.28764 * 109.52358 * 0.25694 * 28 7 6 30 30 H 1.08997 * 109.47478 * 60.00091 * 1 2 3 31 31 H 1.09001 * 109.47056 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47223 * 299.99413 * 1 2 3 33 33 H 1.08994 * 109.46846 * 60.00190 * 3 2 1 34 34 H 1.09002 * 109.46847 * 300.00366 * 3 2 1 35 35 H 1.08997 * 109.47449 * 59.99621 * 4 3 2 36 36 H 1.09005 * 109.46827 * 300.00021 * 4 3 2 37 37 H 1.08003 * 126.58450 * 0.02562 * 6 5 4 38 38 H 0.97000 * 120.00112 * 359.73137 * 10 8 7 39 39 H 1.08997 * 110.48929 * 261.57698 * 13 11 10 40 40 H 1.09008 * 110.48330 * 24.08235 * 13 11 10 41 41 H 1.09003 * 110.75441 * 80.37117 * 14 13 11 42 42 H 1.08998 * 110.76192 * 203.74562 * 14 13 11 43 43 H 1.09000 * 110.48667 * 156.61923 * 15 14 13 44 44 H 1.08998 * 110.48785 * 279.13026 * 15 14 13 45 45 H 1.09003 * 109.47214 * 294.99699 * 18 16 11 46 46 H 1.08998 * 109.47529 * 54.99678 * 18 16 11 47 47 H 0.97005 * 120.00380 * 359.97438 * 19 18 16 48 48 H 0.96993 * 119.99844 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.1313 2.5231 -0.0013 6 6 5.0304 3.0029 0.8813 7 6 5.3066 4.2869 0.5061 8 6 6.2393 5.2032 1.1894 9 8 6.8370 4.8337 2.1818 10 7 6.4250 6.4516 0.7167 11 6 7.3467 7.3636 1.3987 12 1 7.3128 7.1925 2.4746 13 6 8.7824 7.1532 0.8750 14 6 9.3889 8.5780 0.8463 15 6 8.1954 9.4483 0.3801 16 6 6.9734 8.8229 1.0840 17 1 6.7586 9.3607 2.0074 18 6 5.7562 8.8645 0.1580 19 7 5.3388 10.2551 -0.0376 20 6 4.2628 10.5413 -0.8348 21 1 3.7217 9.7419 -1.3190 22 6 3.8669 11.8589 -1.0198 23 7 4.5261 12.8332 -0.4293 24 14 2.3987 12.2492 -2.1067 25 1 1.8357 10.9871 -2.6502 26 1 1.3626 12.9497 -1.3061 27 1 2.8311 13.1212 -3.2283 28 7 4.5893 4.5725 -0.5940 29 7 3.8806 3.5491 -0.9233 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 1.6886 1.8463 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.8567 0.6439 -0.8908 36 1 3.8573 0.6436 0.8892 37 1 5.4501 2.4743 1.7244 38 1 5.9484 6.7463 -0.0751 39 1 9.3458 6.5123 1.5532 40 1 8.7639 6.7240 -0.1268 41 1 9.7197 8.8771 1.8409 42 1 10.2101 8.6341 0.1318 43 1 8.3304 10.4823 0.6972 44 1 8.0835 9.3938 -0.7028 45 1 6.0169 8.4246 -0.8047 46 1 4.9391 8.2994 0.6063 47 1 5.8246 10.9731 0.3976 48 1 4.2493 13.7538 -0.5582 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732614574.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:18 Heat of formation + Delta-G solvation = 2.789236 kcal Electronic energy + Delta-G solvation = -28886.274529 eV Core-core repulsion = 24784.923018 eV Total energy + Delta-G solvation = -4101.351511 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.30899 -41.05204 -39.17373 -39.00882 -36.22176 -36.00824 -34.64689 -33.29704 -32.24177 -31.01490 -30.15748 -28.61466 -27.39526 -26.35863 -25.13791 -24.59996 -24.21204 -22.83616 -21.75597 -21.42708 -20.31044 -19.48531 -18.95917 -17.87886 -17.54567 -17.30470 -16.91840 -16.68452 -16.55535 -16.32447 -16.05849 -15.68492 -15.60765 -15.46080 -15.23737 -15.01162 -14.74962 -14.55731 -14.35852 -13.50952 -13.44071 -13.25637 -13.12078 -12.87060 -12.79849 -12.77598 -12.44531 -12.34356 -12.14717 -12.12923 -11.90183 -11.77865 -11.70564 -11.51075 -11.44561 -11.43234 -11.21352 -10.94132 -10.81714 -10.45482 -10.00131 -8.99184 -7.94884 -5.23132 0.08276 0.57798 0.91017 1.46829 1.47149 1.57742 2.12778 2.22267 2.55820 2.64364 3.14509 3.38185 3.42918 3.50957 3.70870 3.74035 3.78104 3.88524 3.93074 4.07948 4.17726 4.19711 4.41914 4.42207 4.44478 4.48484 4.52445 4.54979 4.58233 4.59220 4.68821 4.77274 4.79499 4.82556 4.94696 5.01696 5.11644 5.25625 5.28355 5.34383 5.37850 5.49529 5.52328 5.55422 5.95976 6.27528 6.40462 6.84555 7.11020 7.34497 8.09259 8.33901 9.28728 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008537 B = 0.002844 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3279.024698 B = 9842.152202 C =12782.732387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.399 6.399 3 C 0.051 3.949 4 C 0.122 3.878 5 N -0.350 5.350 6 C 0.122 3.878 7 C -0.127 4.127 8 C 0.605 3.395 9 O -0.563 6.563 10 N -0.708 5.708 11 C 0.153 3.847 12 H 0.091 0.909 13 C -0.124 4.124 14 C -0.111 4.111 15 C -0.111 4.111 16 C -0.100 4.100 17 H 0.077 0.923 18 C 0.160 3.840 19 N -0.739 5.739 20 C -0.242 4.242 21 H 0.072 0.928 22 C -0.074 4.074 23 N -0.967 5.967 24 Si 0.970 3.030 25 H -0.269 1.269 26 H -0.293 1.293 27 H -0.291 1.291 28 N -0.227 5.227 29 N -0.088 5.088 30 H 0.046 0.954 31 H 0.107 0.893 32 H 0.050 0.950 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.120 0.880 36 H 0.151 0.849 37 H 0.246 0.754 38 H 0.411 0.589 39 H 0.080 0.920 40 H 0.067 0.933 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.060 0.940 44 H 0.055 0.945 45 H 0.022 0.978 46 H 0.015 0.985 47 H 0.376 0.624 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.806 -28.379 4.345 28.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.317 6.317 3 C -0.027 4.027 4 C 0.002 3.998 5 N -0.136 5.136 6 C -0.035 4.035 7 C -0.267 4.267 8 C 0.390 3.610 9 O -0.441 6.441 10 N -0.359 5.359 11 C 0.048 3.952 12 H 0.109 0.891 13 C -0.162 4.162 14 C -0.149 4.149 15 C -0.149 4.149 16 C -0.120 4.120 17 H 0.095 0.905 18 C 0.034 3.966 19 N -0.381 5.381 20 C -0.374 4.374 21 H 0.090 0.910 22 C -0.266 4.266 23 N -0.618 5.618 24 Si 0.800 3.200 25 H -0.194 1.194 26 H -0.220 1.220 27 H -0.219 1.219 28 N -0.100 5.100 29 N -0.069 5.069 30 H 0.065 0.935 31 H 0.125 0.875 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.139 0.861 36 H 0.168 0.832 37 H 0.262 0.738 38 H 0.250 0.750 39 H 0.098 0.902 40 H 0.085 0.915 41 H 0.100 0.900 42 H 0.100 0.900 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.039 0.961 46 H 0.033 0.967 47 H 0.208 0.792 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 1.356 -28.511 3.659 28.777 hybrid contribution -0.914 1.054 -0.093 1.398 sum 0.442 -27.458 3.566 27.692 Atomic orbital electron populations 1.22980 0.78686 1.04392 1.00898 1.87743 1.21905 1.26418 1.95680 1.22562 0.92553 0.85706 1.01863 1.22046 0.92499 0.76302 1.08933 1.50520 1.29656 1.13946 1.19439 1.23910 0.90523 0.93548 0.95547 1.21572 1.08227 0.96869 0.99994 1.16916 0.80006 0.81365 0.82705 1.90759 1.50300 1.76664 1.26421 1.46277 1.45448 1.12408 1.31814 1.21691 0.89107 0.86857 0.97499 0.89113 1.22715 0.93970 0.97997 1.01559 1.22442 0.96859 0.93266 1.02347 1.22300 0.93760 0.99141 0.99654 1.22126 0.95561 0.95033 0.99232 0.90459 1.20771 0.94016 0.86072 0.95776 1.42491 1.35035 1.02902 1.57702 1.19634 1.05375 0.92044 1.20373 0.91018 1.25518 1.02576 0.95662 1.02847 1.69813 1.43728 0.98918 1.49349 0.85114 0.79084 0.77795 0.78037 1.19351 1.21977 1.21854 1.74705 1.04399 1.19835 1.11088 1.81967 1.20707 0.91219 1.12971 0.93487 0.87511 0.93181 0.92365 0.92616 0.86148 0.83162 0.73823 0.75036 0.90156 0.91454 0.90021 0.90010 0.92090 0.92607 0.96069 0.96669 0.79189 0.93992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 113.37 1.25 1.47 16 2 O -0.40 -4.85 10.70 -148.98 -1.59 -6.45 16 3 C 0.05 0.59 6.14 71.98 0.44 1.04 16 4 C 0.12 1.03 6.91 86.38 0.60 1.63 16 5 N -0.35 -5.76 3.69 -347.09 -1.28 -7.04 16 6 C 0.12 2.05 11.27 83.85 0.95 2.99 16 7 C -0.13 -3.25 6.99 40.82 0.29 -2.97 16 8 C 0.60 17.44 7.81 86.69 0.68 18.11 16 9 O -0.56 -17.41 16.54 -4.04 -0.07 -17.47 16 10 N -0.71 -21.00 4.42 -442.26 -1.96 -22.95 16 11 C 0.15 4.33 3.21 45.71 0.15 4.48 16 12 H 0.09 2.60 7.61 -2.39 -0.02 2.58 16 13 C -0.12 -2.96 6.53 31.67 0.21 -2.76 16 14 C -0.11 -2.53 6.91 31.88 0.22 -2.31 16 15 C -0.11 -3.36 6.08 31.67 0.19 -3.17 16 16 C -0.10 -3.29 2.96 -10.07 -0.03 -3.31 16 17 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 18 C 0.16 6.58 4.18 86.38 0.36 6.94 16 19 N -0.74 -38.24 5.45 -343.45 -1.87 -40.11 16 20 C -0.24 -13.90 9.99 84.03 0.84 -13.06 16 21 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 22 C -0.07 -4.32 5.50 84.86 0.47 -3.86 16 23 N -0.97 -59.90 13.06 21.65 0.28 -59.61 16 24 Si 0.97 47.29 29.55 68.60 2.03 49.32 16 25 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 26 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 27 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 28 N -0.23 -6.69 12.04 -50.00 -0.60 -7.29 16 29 N -0.09 -2.27 13.65 37.02 0.51 -1.76 16 30 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.15 0.27 8.08 -2.38 -0.02 0.25 16 37 H 0.25 1.95 8.06 -2.91 -0.02 1.93 16 38 H 0.41 13.07 5.52 -92.71 -0.51 12.55 16 39 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.07 1.65 8.05 -2.38 -0.02 1.63 16 41 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.06 1.87 7.77 -2.39 -0.02 1.85 16 45 H 0.02 0.88 7.12 -2.39 -0.02 0.87 16 46 H 0.02 0.66 7.40 -2.39 -0.02 0.64 16 47 H 0.38 20.50 7.55 -92.70 -0.70 19.80 16 48 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -75.16 398.77 1.81 -73.35 By element: Atomic # 1 Polarization: 35.03 SS G_CDS: -0.23 Total: 34.79 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: 6.60 Total: 5.22 kcal Atomic # 7 Polarization: -133.84 SS G_CDS: -4.92 Total: -138.77 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -1.66 Total: -23.92 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 2.03 Total: 49.32 kcal Total: -75.16 1.81 -73.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732614574.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.137 kcal (2) G-P(sol) polarization free energy of solvation -75.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds