Wall clock time and date at job start Tue Mar 31 2020 21:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 114.00105 * 2 1 4 4 C 1.53000 * 109.46775 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47506 * 65.00362 * 4 3 2 6 6 C 1.36927 * 119.99983 * 270.00220 * 5 4 3 7 7 H 1.07999 * 120.00678 * 141.82596 * 6 5 4 8 8 C 1.38814 * 120.00045 * 321.82384 * 6 5 4 9 9 N 1.31620 * 120.00062 * 157.03905 * 8 6 5 10 10 Si 1.86802 * 120.00115 * 337.04141 * 8 6 5 11 11 H 1.48496 * 109.47189 * 95.44729 * 10 8 6 12 12 H 1.48499 * 109.47364 * 215.45183 * 10 8 6 13 13 H 1.48504 * 109.46498 * 335.44832 * 10 8 6 14 14 C 1.46503 * 119.99908 * 89.99407 * 5 4 3 15 15 C 1.53039 * 109.46165 * 244.77749 * 14 5 4 16 16 C 1.53187 * 109.31353 * 178.62637 * 15 14 5 17 17 N 1.46927 * 108.77406 * 54.63628 * 16 15 14 18 18 C 1.34786 * 120.63146 * 126.36625 * 17 16 15 19 19 O 1.21285 * 119.99402 * 0.02562 * 18 17 16 20 20 C 1.50703 * 119.99889 * 180.02562 * 18 17 16 21 21 N 1.46496 * 109.46610 * 180.02562 * 20 18 17 22 22 C 1.34430 * 126.82494 * 124.71348 * 21 20 18 23 23 N 1.30828 * 108.07913 * 179.89198 * 22 21 20 24 24 C 1.33233 * 109.83060 * 0.37482 * 23 22 21 25 25 N 1.30716 * 108.94568 * 359.76866 * 24 23 22 26 26 C 1.46926 * 118.74190 * 306.64346 * 17 16 15 27 27 C 1.52769 * 109.00574 * 53.30637 * 26 17 16 28 28 H 1.09000 * 109.47270 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46872 * 300.00029 * 1 2 3 30 30 H 1.08998 * 109.47214 * 59.99448 * 1 2 3 31 31 H 1.08996 * 109.46770 * 60.00754 * 3 2 1 32 32 H 1.08999 * 109.47479 * 300.00329 * 3 2 1 33 33 H 1.09001 * 109.47264 * 304.99855 * 4 3 2 34 34 H 1.09008 * 109.46894 * 185.00645 * 4 3 2 35 35 H 0.97008 * 119.99974 * 180.02562 * 9 8 6 36 36 H 1.08999 * 109.45833 * 4.74992 * 14 5 4 37 37 H 1.09007 * 109.49562 * 58.67782 * 15 14 5 38 38 H 1.09000 * 109.52259 * 298.59748 * 15 14 5 39 39 H 1.09000 * 109.59188 * 294.85079 * 16 15 14 40 40 H 1.09004 * 109.70624 * 174.48923 * 16 15 14 41 41 H 1.09000 * 109.46955 * 299.99483 * 20 18 17 42 42 H 1.09000 * 109.46946 * 60.00005 * 20 18 17 43 43 H 1.08007 * 125.95765 * 0.02911 * 22 21 20 44 44 H 1.08004 * 125.52767 * 179.72891 * 24 23 22 45 45 H 1.08997 * 109.58989 * 173.14132 * 26 17 16 46 46 H 1.08999 * 109.58589 * 293.57131 * 26 17 16 47 47 H 1.08998 * 109.56533 * 185.55862 * 27 26 17 48 48 H 1.08994 * 109.38579 * 65.51848 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.0967 -0.7970 -1.3370 7 1 3.8123 -1.3094 -2.2441 8 6 4.5849 -1.5186 -0.2563 9 7 4.2965 -2.7970 -0.1343 10 14 5.6513 -0.6753 1.0248 11 1 4.8047 -0.2393 2.1642 12 1 6.6851 -1.6242 1.5108 13 1 6.3119 0.5081 0.4176 14 6 4.2864 1.4007 -2.4148 15 6 3.2911 1.1024 -3.5384 16 6 3.5977 2.0029 -4.7391 17 7 5.0061 1.8236 -5.1172 18 6 5.3420 1.5050 -6.3831 19 8 4.4781 1.3640 -7.2225 20 6 6.7911 1.3238 -6.7551 21 7 6.8914 0.9846 -8.1767 22 6 7.6125 1.6296 -9.1101 23 7 7.4389 1.0163 -10.2527 24 6 6.6111 -0.0150 -10.0910 25 7 6.2486 -0.0756 -8.8365 26 6 6.0409 1.9921 -4.0880 27 6 5.7072 1.0971 -2.8957 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.6887 1.8463 0.8900 32 1 1.6886 1.8465 -0.8899 33 1 3.8514 0.5681 0.8409 34 1 3.9786 2.1764 0.0890 35 1 4.6375 -3.3012 0.6211 36 1 4.2143 2.4518 -2.1354 37 1 2.2774 1.2966 -3.1875 38 1 3.3794 0.0574 -3.8354 39 1 3.4215 3.0443 -4.4694 40 1 2.9566 1.7290 -5.5771 41 1 7.3338 2.2496 -6.5638 42 1 7.2218 0.5200 -6.1581 43 1 8.2294 2.5006 -8.9450 44 1 6.2909 -0.6909 -10.8701 45 1 7.0113 1.7087 -4.4955 46 1 6.0680 3.0325 -3.7640 47 1 6.4133 1.2875 -2.0875 48 1 5.7735 0.0521 -3.1981 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733280971.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:51 Heat of formation + Delta-G solvation = 58.829782 kcal Electronic energy + Delta-G solvation = -30375.425793 eV Core-core repulsion = 26276.504382 eV Total energy + Delta-G solvation = -4098.921411 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.15647 -40.11695 -37.94667 -36.98445 -35.18810 -34.20806 -32.15134 -31.30497 -31.19438 -30.96048 -28.67354 -27.95400 -25.71702 -25.04623 -23.29670 -23.03098 -22.26686 -22.07023 -21.22342 -20.08908 -18.97718 -17.72455 -17.22277 -16.47130 -15.99926 -15.92489 -15.76901 -15.41715 -15.11901 -14.79891 -14.77816 -14.39485 -14.18515 -14.12523 -13.86206 -13.68893 -13.26154 -13.13529 -12.69443 -12.61483 -12.28366 -12.03859 -11.93959 -11.88863 -11.66599 -11.43777 -10.91370 -10.77202 -10.71066 -10.60578 -10.39142 -10.31524 -10.11608 -9.98886 -9.84745 -9.73929 -9.57337 -9.43498 -8.90448 -8.62772 -8.39785 -6.82169 -5.90694 -3.32370 1.52213 2.04778 2.46196 2.89646 2.97581 3.31925 3.44426 3.47867 4.11403 4.17751 4.31616 4.51504 4.57582 4.70079 4.75024 4.78696 4.91042 5.13702 5.26534 5.30444 5.39349 5.49793 5.60162 5.67655 5.70544 5.77195 5.82888 5.90540 5.94069 6.03419 6.07284 6.09171 6.09580 6.10899 6.24518 6.31452 6.35541 6.45448 6.60033 6.68763 6.69512 6.91215 6.95466 7.33552 7.94046 7.97251 8.06965 8.12651 8.46382 9.01244 9.78632 10.14310 11.25285 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016170 B = 0.002959 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.232525 B = 9460.679586 C =10063.464327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.346 6.346 3 C 0.047 3.953 4 C 0.134 3.866 5 N -0.593 5.593 6 C -0.249 4.249 7 H 0.074 0.926 8 C 0.046 3.954 9 N -0.895 5.895 10 Si 0.870 3.130 11 H -0.288 1.288 12 H -0.304 1.304 13 H -0.271 1.271 14 C 0.181 3.819 15 C -0.140 4.140 16 C 0.116 3.884 17 N -0.602 5.602 18 C 0.503 3.497 19 O -0.520 6.520 20 C 0.110 3.890 21 N -0.367 5.367 22 C 0.251 3.749 23 N -0.547 5.547 24 C 0.188 3.812 25 N -0.284 5.284 26 C 0.105 3.895 27 C -0.141 4.141 28 H 0.078 0.922 29 H 0.025 0.975 30 H 0.029 0.971 31 H 0.026 0.974 32 H 0.036 0.964 33 H 0.063 0.937 34 H 0.052 0.948 35 H 0.260 0.740 36 H 0.050 0.950 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.086 0.914 41 H 0.129 0.871 42 H 0.122 0.878 43 H 0.218 0.782 44 H 0.216 0.784 45 H 0.075 0.925 46 H 0.069 0.931 47 H 0.073 0.927 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.551 13.969 -8.274 16.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.263 6.263 3 C -0.033 4.033 4 C 0.009 3.991 5 N -0.313 5.313 6 C -0.377 4.377 7 H 0.092 0.908 8 C -0.155 4.155 9 N -0.536 5.536 10 Si 0.700 3.300 11 H -0.216 1.216 12 H -0.233 1.233 13 H -0.196 1.196 14 C 0.073 3.927 15 C -0.180 4.180 16 C -0.006 4.006 17 N -0.336 5.336 18 C 0.288 3.712 19 O -0.395 6.395 20 C -0.016 4.016 21 N -0.159 5.159 22 C -0.046 4.046 23 N -0.274 5.274 24 C -0.114 4.114 25 N -0.111 5.111 26 C -0.018 4.018 27 C -0.181 4.181 28 H 0.097 0.903 29 H 0.044 0.956 30 H 0.047 0.953 31 H 0.044 0.956 32 H 0.054 0.946 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.104 0.896 41 H 0.147 0.853 42 H 0.140 0.860 43 H 0.234 0.766 44 H 0.232 0.768 45 H 0.094 0.906 46 H 0.087 0.913 47 H 0.091 0.909 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.883 13.106 -8.564 16.130 hybrid contribution 0.382 0.772 1.238 1.508 sum 4.265 13.877 -7.326 16.262 Atomic orbital electron populations 1.22640 0.83824 1.01882 0.98221 1.88310 1.16862 1.26397 1.94774 1.23274 0.97427 0.85125 0.97452 1.21347 0.90341 0.96425 0.91036 1.44085 1.75942 1.03718 1.07601 1.18443 1.37333 0.79683 1.02262 0.90807 1.25349 0.97942 0.94707 0.97500 1.69895 1.44662 1.08460 1.30562 0.87052 0.81452 0.79250 0.82214 1.21643 1.23264 1.19604 1.20305 0.91384 0.93193 0.87785 1.22379 1.00379 1.00578 0.94650 1.21697 0.80743 0.99379 0.98786 1.48116 1.08543 1.68908 1.08066 1.20287 0.90435 0.77744 0.82741 1.90774 1.50334 1.49552 1.48796 1.21690 0.97187 1.04439 0.78272 1.50035 1.34877 1.22284 1.08678 1.26031 0.95896 0.98631 0.84044 1.70502 1.21618 1.10309 1.24980 1.26020 0.94808 0.96633 0.93988 1.78265 1.17886 1.07052 1.07866 1.21853 0.89912 1.00584 0.89431 1.22252 0.99348 1.00841 0.95667 0.90335 0.95630 0.95269 0.95576 0.94602 0.91947 0.92929 0.93017 0.93168 0.91349 0.90816 0.91954 0.89609 0.85348 0.86033 0.76577 0.76782 0.90649 0.91255 0.90882 0.90074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.64 16 2 O -0.35 -7.46 10.18 -35.23 -0.36 -7.82 16 3 C 0.05 0.86 6.28 37.16 0.23 1.09 16 4 C 0.13 2.68 4.93 -4.04 -0.02 2.66 16 5 N -0.59 -12.50 1.98 -165.61 -0.33 -12.83 16 6 C -0.25 -6.43 8.05 -15.06 -0.12 -6.55 16 7 H 0.07 2.15 7.24 -52.49 -0.38 1.77 16 8 C 0.05 1.26 5.29 -17.43 -0.09 1.16 16 9 N -0.89 -26.88 13.97 55.49 0.78 -26.10 16 10 Si 0.87 21.12 25.12 -169.99 -4.27 16.85 16 11 H -0.29 -6.99 6.67 56.52 0.38 -6.61 16 12 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 13 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 14 C 0.18 3.00 2.60 -67.89 -0.18 2.83 16 15 C -0.14 -2.28 5.38 -26.61 -0.14 -2.42 16 16 C 0.12 1.59 6.44 -3.71 -0.02 1.56 16 17 N -0.60 -7.56 2.98 -173.02 -0.52 -8.07 16 18 C 0.50 6.81 7.74 -10.98 -0.08 6.72 16 19 O -0.52 -9.37 15.15 5.55 0.08 -9.29 16 20 C 0.11 1.03 5.38 -5.19 -0.03 1.01 16 21 N -0.37 -4.38 3.41 -63.81 -0.22 -4.60 16 22 C 0.25 2.47 12.63 -90.66 -1.14 1.33 16 23 N -0.55 -6.77 11.19 -15.83 -0.18 -6.94 16 24 C 0.19 2.40 13.03 -91.82 -1.20 1.21 16 25 N -0.28 -4.28 11.81 29.29 0.35 -3.93 16 26 C 0.11 1.09 6.31 -3.93 -0.02 1.06 16 27 C -0.14 -2.11 5.21 -26.83 -0.14 -2.25 16 28 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 29 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 1.42 3.40 -51.93 -0.18 1.25 16 34 H 0.05 0.88 7.88 -51.92 -0.41 0.47 16 35 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 36 H 0.05 0.74 7.77 -51.93 -0.40 0.33 16 37 H 0.07 1.14 8.14 -51.92 -0.42 0.72 16 38 H 0.07 1.46 7.24 -51.93 -0.38 1.08 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.09 1.31 7.00 -51.93 -0.36 0.94 16 41 H 0.13 0.59 7.90 -51.93 -0.41 0.18 16 42 H 0.12 1.03 7.68 -51.93 -0.40 0.64 16 43 H 0.22 0.97 8.06 -52.48 -0.42 0.55 16 44 H 0.22 1.97 8.06 -52.48 -0.42 1.55 16 45 H 0.08 0.55 5.93 -51.93 -0.31 0.25 16 46 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 48 H 0.08 1.45 7.61 -51.93 -0.40 1.06 16 LS Contribution 384.29 15.07 5.79 5.79 Total: -1.00 -37.33 384.29 -8.15 -45.48 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -7.43 Total: 0.43 kcal Atomic # 6 Polarization: 12.88 SS G_CDS: -1.85 Total: 11.03 kcal Atomic # 7 Polarization: -62.37 SS G_CDS: -0.12 Total: -62.48 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: -0.27 Total: -17.11 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.27 Total: 16.85 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.33 -8.15 -45.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733280971.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.306 kcal (2) G-P(sol) polarization free energy of solvation -37.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds