Wall clock time and date at job start Tue Mar 31 2020 21:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 114.00105 * 2 1 4 4 C 1.53000 * 109.46775 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47506 * 65.00362 * 4 3 2 6 6 C 1.36927 * 119.99983 * 270.00220 * 5 4 3 7 7 H 1.07999 * 120.00678 * 141.82596 * 6 5 4 8 8 C 1.38814 * 120.00045 * 321.82384 * 6 5 4 9 9 N 1.31620 * 120.00062 * 157.03905 * 8 6 5 10 10 Si 1.86802 * 120.00115 * 337.04141 * 8 6 5 11 11 H 1.48496 * 109.47189 * 95.44729 * 10 8 6 12 12 H 1.48499 * 109.47364 * 215.45183 * 10 8 6 13 13 H 1.48504 * 109.46498 * 335.44832 * 10 8 6 14 14 C 1.46503 * 119.99908 * 89.99407 * 5 4 3 15 15 C 1.53039 * 109.46165 * 244.77749 * 14 5 4 16 16 C 1.53187 * 109.31353 * 178.62637 * 15 14 5 17 17 N 1.46927 * 108.77406 * 54.63628 * 16 15 14 18 18 C 1.34786 * 120.63146 * 126.36625 * 17 16 15 19 19 O 1.21285 * 119.99402 * 0.02562 * 18 17 16 20 20 C 1.50703 * 119.99889 * 180.02562 * 18 17 16 21 21 N 1.46496 * 109.46610 * 180.02562 * 20 18 17 22 22 C 1.34430 * 126.82494 * 124.71348 * 21 20 18 23 23 N 1.30828 * 108.07913 * 179.89198 * 22 21 20 24 24 C 1.33233 * 109.83060 * 0.37482 * 23 22 21 25 25 N 1.30716 * 108.94568 * 359.76866 * 24 23 22 26 26 C 1.46926 * 118.74190 * 306.64346 * 17 16 15 27 27 C 1.52769 * 109.00574 * 53.30637 * 26 17 16 28 28 H 1.09000 * 109.47270 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46872 * 300.00029 * 1 2 3 30 30 H 1.08998 * 109.47214 * 59.99448 * 1 2 3 31 31 H 1.08996 * 109.46770 * 60.00754 * 3 2 1 32 32 H 1.08999 * 109.47479 * 300.00329 * 3 2 1 33 33 H 1.09001 * 109.47264 * 304.99855 * 4 3 2 34 34 H 1.09008 * 109.46894 * 185.00645 * 4 3 2 35 35 H 0.97008 * 119.99974 * 180.02562 * 9 8 6 36 36 H 1.08999 * 109.45833 * 4.74992 * 14 5 4 37 37 H 1.09007 * 109.49562 * 58.67782 * 15 14 5 38 38 H 1.09000 * 109.52259 * 298.59748 * 15 14 5 39 39 H 1.09000 * 109.59188 * 294.85079 * 16 15 14 40 40 H 1.09004 * 109.70624 * 174.48923 * 16 15 14 41 41 H 1.09000 * 109.46955 * 299.99483 * 20 18 17 42 42 H 1.09000 * 109.46946 * 60.00005 * 20 18 17 43 43 H 1.08007 * 125.95765 * 0.02911 * 22 21 20 44 44 H 1.08004 * 125.52767 * 179.72891 * 24 23 22 45 45 H 1.08997 * 109.58989 * 173.14132 * 26 17 16 46 46 H 1.08999 * 109.58589 * 293.57131 * 26 17 16 47 47 H 1.08998 * 109.56533 * 185.55862 * 27 26 17 48 48 H 1.08994 * 109.38579 * 65.51848 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.0967 -0.7970 -1.3370 7 1 3.8123 -1.3094 -2.2441 8 6 4.5849 -1.5186 -0.2563 9 7 4.2965 -2.7970 -0.1343 10 14 5.6513 -0.6753 1.0248 11 1 4.8047 -0.2393 2.1642 12 1 6.6851 -1.6242 1.5108 13 1 6.3119 0.5081 0.4176 14 6 4.2864 1.4007 -2.4148 15 6 3.2911 1.1024 -3.5384 16 6 3.5977 2.0029 -4.7391 17 7 5.0061 1.8236 -5.1172 18 6 5.3420 1.5050 -6.3831 19 8 4.4781 1.3640 -7.2225 20 6 6.7911 1.3238 -6.7551 21 7 6.8914 0.9846 -8.1767 22 6 7.6125 1.6296 -9.1101 23 7 7.4389 1.0163 -10.2527 24 6 6.6111 -0.0150 -10.0910 25 7 6.2486 -0.0756 -8.8365 26 6 6.0409 1.9921 -4.0880 27 6 5.7072 1.0971 -2.8957 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.6887 1.8463 0.8900 32 1 1.6886 1.8465 -0.8899 33 1 3.8514 0.5681 0.8409 34 1 3.9786 2.1764 0.0890 35 1 4.6375 -3.3012 0.6211 36 1 4.2143 2.4518 -2.1354 37 1 2.2774 1.2966 -3.1875 38 1 3.3794 0.0574 -3.8354 39 1 3.4215 3.0443 -4.4694 40 1 2.9566 1.7290 -5.5771 41 1 7.3338 2.2496 -6.5638 42 1 7.2218 0.5200 -6.1581 43 1 8.2294 2.5006 -8.9450 44 1 6.2909 -0.6909 -10.8701 45 1 7.0113 1.7087 -4.4955 46 1 6.0680 3.0325 -3.7640 47 1 6.4133 1.2875 -2.0875 48 1 5.7735 0.0521 -3.1981 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733280971.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:50 Heat of formation + Delta-G solvation = 32.268752 kcal Electronic energy + Delta-G solvation = -30376.577565 eV Core-core repulsion = 26276.504382 eV Total energy + Delta-G solvation = -4100.073183 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.99210 -41.18089 -39.34621 -38.35613 -36.65044 -35.07221 -33.86758 -32.78920 -32.15667 -32.07236 -30.06777 -29.00446 -27.17746 -26.48414 -24.73725 -24.15975 -23.33359 -22.87040 -22.57927 -21.44373 -20.12912 -18.70127 -18.33877 -18.02927 -17.43426 -17.06412 -16.87189 -16.74422 -16.44308 -16.02942 -15.95989 -15.63628 -15.61793 -15.03887 -14.93547 -14.91776 -14.57519 -14.47335 -14.12454 -13.86934 -13.57291 -13.36536 -13.32642 -12.99057 -12.90544 -12.75862 -12.47124 -12.31135 -12.18015 -12.07432 -11.81256 -11.64374 -11.34792 -11.30529 -11.11098 -10.99692 -10.76322 -10.49013 -10.47309 -10.33523 -9.65414 -8.61724 -8.02326 -5.39183 0.71642 1.31499 1.38504 1.45930 1.48387 1.57300 2.00654 2.08460 2.55550 3.10175 3.16608 3.29230 3.49415 3.54689 3.67730 3.93716 4.06920 4.10027 4.13673 4.23222 4.30409 4.35807 4.41031 4.43190 4.46478 4.54949 4.59161 4.66519 4.67919 4.71718 4.81322 4.82190 4.86195 4.88354 5.07649 5.10233 5.20278 5.25586 5.44620 5.49768 5.61037 5.64398 5.91481 6.09566 6.33537 6.37180 6.60021 7.06687 7.14899 7.15760 7.81344 8.18798 9.18974 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016170 B = 0.002959 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.232525 B = 9460.679586 C =10063.464327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.400 6.400 3 C 0.045 3.955 4 C 0.124 3.876 5 N -0.602 5.602 6 C -0.211 4.211 7 H 0.019 0.981 8 C -0.020 4.020 9 N -0.958 5.958 10 Si 0.939 3.061 11 H -0.287 1.287 12 H -0.322 1.322 13 H -0.236 1.236 14 C 0.174 3.826 15 C -0.128 4.128 16 C 0.125 3.875 17 N -0.602 5.602 18 C 0.495 3.505 19 O -0.575 6.575 20 C 0.111 3.889 21 N -0.377 5.377 22 C 0.266 3.734 23 N -0.576 5.576 24 C 0.184 3.816 25 N -0.345 5.345 26 C 0.111 3.889 27 C -0.138 4.138 28 H 0.071 0.929 29 H 0.052 0.948 30 H 0.042 0.958 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.033 0.967 34 H 0.098 0.902 35 H 0.254 0.746 36 H 0.092 0.908 37 H 0.060 0.940 38 H 0.019 0.981 39 H 0.099 0.901 40 H 0.061 0.939 41 H 0.191 0.809 42 H 0.131 0.869 43 H 0.273 0.727 44 H 0.233 0.767 45 H 0.114 0.886 46 H 0.111 0.889 47 H 0.078 0.922 48 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.798 19.157 -7.777 21.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.319 6.319 3 C -0.033 4.033 4 C -0.001 4.001 5 N -0.324 5.324 6 C -0.342 4.342 7 H 0.037 0.963 8 C -0.215 4.215 9 N -0.604 5.604 10 Si 0.769 3.231 11 H -0.215 1.215 12 H -0.252 1.252 13 H -0.159 1.159 14 C 0.068 3.932 15 C -0.168 4.168 16 C 0.002 3.998 17 N -0.335 5.335 18 C 0.283 3.717 19 O -0.454 6.454 20 C -0.014 4.014 21 N -0.168 5.168 22 C -0.029 4.029 23 N -0.304 5.304 24 C -0.119 4.119 25 N -0.172 5.172 26 C -0.011 4.011 27 C -0.178 4.178 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.051 0.949 34 H 0.116 0.884 35 H 0.062 0.938 36 H 0.110 0.890 37 H 0.079 0.921 38 H 0.038 0.962 39 H 0.117 0.883 40 H 0.079 0.921 41 H 0.208 0.792 42 H 0.148 0.852 43 H 0.288 0.712 44 H 0.249 0.751 45 H 0.132 0.868 46 H 0.129 0.871 47 H 0.097 0.903 48 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 6.146 18.373 -8.057 20.982 hybrid contribution -0.459 -0.818 1.012 1.380 sum 5.686 17.555 -7.045 19.752 Atomic orbital electron populations 1.22757 0.81642 1.02184 1.00101 1.88232 1.19576 1.28865 1.95212 1.23324 0.96272 0.84244 0.99492 1.21549 0.91800 0.97787 0.88966 1.44194 1.76421 1.02255 1.09517 1.18076 1.34339 0.82144 0.99614 0.96334 1.25970 0.99945 0.95159 1.00447 1.70075 1.47461 1.10798 1.32029 0.85920 0.78983 0.78658 0.79525 1.21534 1.25158 1.15937 1.20610 0.92280 0.94390 0.85886 1.22198 1.00294 0.98097 0.96193 1.21510 0.81675 1.00268 0.96316 1.48229 1.08453 1.68264 1.08549 1.21087 0.91991 0.76334 0.82320 1.90757 1.52347 1.51822 1.50440 1.22041 0.94458 1.07611 0.77246 1.50155 1.35035 1.21903 1.09729 1.27097 0.94512 0.98639 0.82690 1.70519 1.22376 1.10837 1.26621 1.26460 0.94414 0.97019 0.93961 1.78175 1.20234 1.09638 1.09131 1.22050 0.90540 1.01623 0.86847 1.22154 0.98169 0.99469 0.98001 0.91036 0.92998 0.93901 0.92666 0.93113 0.94882 0.88355 0.93764 0.88984 0.92142 0.96173 0.88327 0.92055 0.79167 0.85167 0.71181 0.75097 0.86842 0.87122 0.90304 0.94561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.97 11.01 113.37 1.25 2.22 16 2 O -0.40 -17.28 10.18 -148.98 -1.52 -18.80 16 3 C 0.05 1.55 6.28 71.98 0.45 2.00 16 4 C 0.12 4.59 4.93 86.38 0.43 5.02 16 5 N -0.60 -24.85 1.98 -677.88 -1.34 -26.19 16 6 C -0.21 -11.41 8.05 84.04 0.68 -10.74 16 7 H 0.02 1.20 7.24 -2.91 -0.02 1.18 16 8 C -0.02 -1.17 5.29 84.86 0.45 -0.72 16 9 N -0.96 -61.21 13.97 21.65 0.30 -60.91 16 10 Si 0.94 44.34 25.12 68.60 1.72 46.06 16 11 H -0.29 -13.37 6.67 99.48 0.66 -12.71 16 12 H -0.32 -15.94 7.11 99.48 0.71 -15.23 16 13 H -0.24 -9.64 7.11 99.48 0.71 -8.94 16 14 C 0.17 5.38 2.60 45.02 0.12 5.50 16 15 C -0.13 -4.19 5.38 30.67 0.16 -4.03 16 16 C 0.13 3.24 6.44 86.36 0.56 3.79 16 17 N -0.60 -13.50 2.98 -819.71 -2.44 -15.94 16 18 C 0.50 12.54 7.74 87.66 0.68 13.22 16 19 O -0.57 -20.96 15.15 -3.04 -0.05 -21.01 16 20 C 0.11 1.68 5.38 85.63 0.46 2.14 16 21 N -0.38 -8.20 3.41 -355.81 -1.21 -9.41 16 22 C 0.27 4.39 12.63 180.36 2.28 6.67 16 23 N -0.58 -13.39 11.19 -204.00 -2.28 -15.68 16 24 C 0.18 4.71 13.03 180.77 2.36 7.07 16 25 N -0.34 -10.47 11.81 -61.25 -0.72 -11.19 16 26 C 0.11 1.73 6.31 86.22 0.54 2.27 16 27 C -0.14 -3.77 5.21 30.53 0.16 -3.61 16 28 H 0.07 2.34 8.14 -2.39 -0.02 2.33 16 29 H 0.05 1.38 8.14 -2.38 -0.02 1.37 16 30 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.06 1.56 8.14 -2.39 -0.02 1.55 16 32 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.03 1.44 3.40 -2.39 -0.01 1.43 16 34 H 0.10 2.73 7.88 -2.38 -0.02 2.71 16 35 H 0.25 15.56 8.31 -92.70 -0.77 14.79 16 36 H 0.09 2.17 7.77 -2.39 -0.02 2.15 16 37 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 38 H 0.02 0.85 7.24 -2.39 -0.02 0.83 16 39 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.06 1.91 7.00 -2.39 -0.02 1.89 16 41 H 0.19 0.41 7.90 -2.39 -0.02 0.39 16 42 H 0.13 1.79 7.68 -2.39 -0.02 1.77 16 43 H 0.27 0.87 8.06 -2.91 -0.02 0.84 16 44 H 0.23 4.42 8.06 -2.91 -0.02 4.40 16 45 H 0.11 0.97 5.93 -2.39 -0.01 0.95 16 46 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 48 H 0.04 1.31 7.61 -2.39 -0.02 1.29 16 Total: -1.00 -93.52 384.29 3.94 -89.58 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: 0.91 Total: 12.68 kcal Atomic # 6 Polarization: 20.24 SS G_CDS: 10.56 Total: 30.80 kcal Atomic # 7 Polarization: -131.62 SS G_CDS: -7.70 Total: -139.32 kcal Atomic # 8 Polarization: -38.24 SS G_CDS: -1.56 Total: -39.81 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 1.72 Total: 46.06 kcal Total: -93.52 3.94 -89.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733280971.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.850 kcal (2) G-P(sol) polarization free energy of solvation -93.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds