Wall clock time and date at job start Tue Mar 31 2020 21:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28599 * 124.62238 * 2 1 4 4 C 1.31377 * 108.72366 * 180.26968 * 3 2 1 5 5 C 1.39677 * 105.89899 * 359.97438 * 4 3 2 6 6 C 1.50693 * 127.05027 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.47180 * 124.97962 * 6 5 4 8 8 C 1.50706 * 109.47053 * 179.97438 * 7 6 5 9 9 O 1.21275 * 120.00139 * 0.02562 * 8 7 6 10 10 N 1.34772 * 119.99594 * 179.97438 * 8 7 6 11 11 C 1.46497 * 119.99915 * 174.88229 * 10 8 7 12 12 C 1.53001 * 109.49661 * 302.88208 * 11 10 8 13 13 O 1.42898 * 109.47253 * 300.67580 * 12 11 10 14 14 C 1.53042 * 109.49763 * 62.94127 * 11 10 8 15 15 C 1.53042 * 109.53426 * 58.58717 * 14 11 10 16 16 C 1.53197 * 109.31389 * 61.36582 * 15 14 11 17 17 N 1.46924 * 108.77532 * 305.36600 * 16 15 14 18 18 C 1.36931 * 120.63020 * 233.62974 * 17 16 15 19 19 H 1.08000 * 120.00364 * 31.67963 * 18 17 16 20 20 C 1.38814 * 120.00217 * 211.68040 * 18 17 16 21 21 N 1.31621 * 119.99737 * 11.00261 * 20 18 17 22 22 Si 1.86803 * 120.00097 * 191.00955 * 20 18 17 23 23 H 1.48496 * 109.47049 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47213 * 119.99769 * 22 20 18 25 25 H 1.48498 * 109.47026 * 239.99769 * 22 20 18 26 26 C 1.46928 * 118.73940 * 53.60344 * 17 16 15 27 27 N 1.28601 * 124.61850 * 180.30924 * 2 1 3 28 28 H 1.09003 * 109.46694 * 269.69769 * 1 2 3 29 29 H 1.09003 * 109.47169 * 29.69295 * 1 2 3 30 30 H 1.08996 * 109.47406 * 149.69672 * 1 2 3 31 31 H 1.07997 * 127.05165 * 179.97438 * 4 3 2 32 32 H 1.09008 * 109.47431 * 244.98083 * 6 5 4 33 33 H 1.08996 * 109.47352 * 4.97855 * 6 5 4 34 34 H 1.08997 * 109.46617 * 300.00113 * 7 6 5 35 35 H 1.08999 * 109.46913 * 60.00229 * 7 6 5 36 36 H 0.97005 * 120.00280 * 354.88745 * 10 8 7 37 37 H 1.08992 * 109.47833 * 60.68118 * 12 11 10 38 38 H 1.09013 * 109.46986 * 180.68656 * 12 11 10 39 39 H 0.96692 * 114.00420 * 180.02562 * 13 12 11 40 40 H 1.08999 * 109.46420 * 178.60561 * 14 11 10 41 41 H 1.08994 * 109.46219 * 298.56873 * 14 11 10 42 42 H 1.09002 * 109.49774 * 181.31732 * 15 14 11 43 43 H 1.08996 * 109.50211 * 301.41425 * 15 14 11 44 44 H 1.08998 * 109.58171 * 65.15332 * 16 15 14 45 45 H 1.08997 * 109.58780 * 185.43444 * 16 15 14 46 46 H 0.97001 * 119.99662 * 179.97438 * 21 20 18 47 47 H 1.08998 * 109.58919 * 186.60525 * 26 17 16 48 48 H 1.09002 * 109.58199 * 66.18299 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1956 1.0583 0.0000 4 6 3.4591 0.6984 -0.0059 5 6 3.4591 -0.6984 -0.0090 6 6 4.6618 -1.6063 -0.0164 7 6 4.5758 -2.5763 1.1638 8 6 5.7783 -3.4847 1.1560 9 8 6.6213 -3.3675 0.2920 10 7 5.9174 -4.4266 2.1099 11 6 7.0257 -5.3821 2.0397 12 6 6.9683 -6.1338 0.7084 13 8 5.7210 -6.8233 0.6040 14 6 8.3550 -4.6311 2.1453 15 6 8.3993 -3.8517 3.4617 16 6 8.3035 -4.8324 4.6347 17 7 7.1010 -5.6590 4.4630 18 6 6.1717 -5.7551 5.4640 19 1 6.0028 -4.9188 6.1263 20 6 5.4464 -6.9273 5.6277 21 7 5.7950 -8.0139 4.9717 22 14 3.9757 -6.9627 6.7789 23 1 3.7945 -5.6224 7.3919 24 1 2.7564 -7.3263 6.0132 25 1 4.2073 -7.9679 7.8471 26 6 6.9144 -6.3801 3.1965 27 7 2.1956 -1.0583 -0.0057 28 1 -0.3633 -0.0054 1.0277 29 1 -0.3634 0.8927 -0.5091 30 1 -0.3634 -0.8872 -0.5185 31 1 4.3211 1.3491 -0.0078 32 1 4.6858 -2.1701 -0.9490 33 1 5.5690 -1.0084 0.0701 34 1 4.5519 -2.0125 2.0963 35 1 3.6687 -3.1743 1.0772 36 1 5.2836 -4.4719 2.8428 37 1 7.0612 -5.4244 -0.1138 38 1 7.7860 -6.8532 0.6618 39 1 5.6153 -7.3230 -0.2170 40 1 9.1785 -5.3447 2.1180 41 1 8.4477 -3.9377 1.3095 42 1 9.3363 -3.2985 3.5256 43 1 7.5617 -3.1552 3.5006 44 1 9.1867 -5.4709 4.6500 45 1 8.2374 -4.2775 5.5705 46 1 5.2885 -8.8331 5.0864 47 1 5.9292 -6.8464 3.1832 48 1 7.6843 -7.1450 3.0947 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733587310.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:55 Heat of formation + Delta-G solvation = 42.488948 kcal Electronic energy + Delta-G solvation = -30543.982650 eV Core-core repulsion = 26444.352647 eV Total energy + Delta-G solvation = -4099.630002 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.65300 -39.91611 -37.51926 -35.84409 -34.89644 -33.63999 -33.03967 -32.51398 -31.67327 -30.18086 -29.69830 -27.72245 -25.41967 -25.02572 -24.74687 -22.46187 -22.19351 -21.20801 -20.48640 -19.70961 -18.55926 -17.49538 -17.06131 -16.88530 -16.68021 -16.47902 -15.47490 -15.16000 -14.91341 -14.61530 -14.13289 -14.03583 -13.86861 -13.65844 -13.45715 -13.16999 -13.05493 -12.99363 -12.78689 -12.40978 -12.29109 -11.99639 -11.84354 -11.61994 -11.38756 -11.10479 -10.95050 -10.92856 -10.85182 -10.75179 -10.43252 -10.32779 -10.17236 -9.94515 -9.80310 -9.56329 -9.52746 -9.24313 -8.85011 -8.52210 -8.27993 -6.63412 -5.80590 -3.29603 1.68447 2.18576 2.31311 3.16885 3.34865 3.42903 3.44228 3.77451 3.96530 4.46007 4.65236 4.72423 4.72962 4.80608 4.98032 5.01968 5.20704 5.30751 5.32493 5.41852 5.46008 5.65749 5.67727 5.77948 5.81297 5.86944 5.91246 6.00840 6.02065 6.11822 6.16983 6.24388 6.36147 6.44145 6.54610 6.55491 6.56221 6.71791 6.86133 7.02388 7.13187 7.38904 7.69364 7.78818 8.11712 8.21039 8.27477 8.46135 8.83373 9.19240 9.80865 10.39954 11.26804 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010721 B = 0.003408 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2610.972362 B = 8214.864225 C = 9435.207209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.163 5.163 3 N -0.294 5.294 4 C -0.023 4.023 5 C 0.009 3.991 6 C -0.010 4.010 7 C -0.136 4.136 8 C 0.515 3.485 9 O -0.561 6.561 10 N -0.686 5.686 11 C 0.156 3.844 12 C 0.068 3.932 13 O -0.559 6.559 14 C -0.120 4.120 15 C -0.127 4.127 16 C 0.142 3.858 17 N -0.591 5.591 18 C -0.259 4.259 19 H 0.065 0.935 20 C 0.009 3.991 21 N -0.898 5.898 22 Si 0.901 3.099 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.290 1.290 26 C 0.176 3.824 27 N -0.285 5.285 28 H 0.088 0.912 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.197 0.803 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.408 0.592 37 H 0.060 0.940 38 H 0.042 0.958 39 H 0.367 0.633 40 H 0.058 0.942 41 H 0.072 0.928 42 H 0.049 0.951 43 H 0.056 0.944 44 H 0.016 0.984 45 H 0.052 0.948 46 H 0.254 0.746 47 H 0.104 0.896 48 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.922 12.608 -11.277 17.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.064 5.064 3 N -0.135 5.135 4 C -0.205 4.205 5 C -0.154 4.154 6 C -0.049 4.049 7 C -0.177 4.177 8 C 0.301 3.699 9 O -0.442 6.442 10 N -0.335 5.335 11 C 0.068 3.932 12 C -0.011 4.011 13 O -0.363 6.363 14 C -0.158 4.158 15 C -0.166 4.166 16 C 0.016 3.984 17 N -0.313 5.313 18 C -0.389 4.389 19 H 0.082 0.918 20 C -0.191 4.191 21 N -0.541 5.541 22 Si 0.731 3.269 23 H -0.203 1.203 24 H -0.215 1.215 25 H -0.217 1.217 26 C 0.050 3.950 27 N -0.127 5.127 28 H 0.107 0.893 29 H 0.119 0.881 30 H 0.120 0.880 31 H 0.214 0.786 32 H 0.106 0.894 33 H 0.111 0.889 34 H 0.107 0.893 35 H 0.114 0.886 36 H 0.244 0.756 37 H 0.078 0.922 38 H 0.061 0.939 39 H 0.211 0.789 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.067 0.933 43 H 0.075 0.925 44 H 0.034 0.966 45 H 0.071 0.929 46 H 0.064 0.936 47 H 0.122 0.878 48 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -5.938 12.780 -11.224 18.016 hybrid contribution -0.089 -0.416 0.463 0.629 sum -6.027 12.364 -10.761 17.464 Atomic orbital electron populations 1.22087 0.70434 1.05636 1.04924 1.47902 1.08817 0.99436 1.50242 1.74010 1.04040 1.16212 1.19283 1.24679 0.94388 0.94808 1.06669 1.23314 0.92683 0.94210 1.05183 1.19607 0.91346 0.94745 0.99242 1.21597 0.98250 0.97778 1.00048 1.20414 0.86974 0.80951 0.81567 1.90565 1.43602 1.71561 1.38427 1.45874 1.30133 1.30960 1.26557 1.21196 0.86058 0.89846 0.96063 1.22583 0.85538 0.94502 0.98511 1.86585 1.37690 1.68446 1.43548 1.21740 0.95912 0.99528 0.98634 1.21907 1.00072 0.98566 0.96074 1.20978 0.89927 0.92250 0.95283 1.44011 1.19924 1.54692 1.12674 1.19181 1.13861 0.96461 1.09366 0.91754 1.25179 1.00365 0.94909 0.98635 1.69970 1.39792 1.00159 1.44193 0.86249 0.82660 0.77542 0.80454 1.20282 1.21523 1.21676 1.21000 1.03349 0.89719 0.80947 1.74042 1.03709 1.15414 1.19553 0.89309 0.88144 0.87982 0.78598 0.89412 0.88927 0.89291 0.88630 0.75629 0.92208 0.93933 0.78856 0.92321 0.90987 0.93264 0.92482 0.96573 0.92949 0.93552 0.87822 0.95290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.69 11.57 59.85 0.69 1.38 16 2 N -0.16 -1.87 4.35 -16.64 -0.07 -1.94 16 3 N -0.29 -3.55 12.05 30.67 0.37 -3.18 16 4 C -0.02 -0.26 12.15 -17.21 -0.21 -0.47 16 5 C 0.01 0.11 6.61 -82.25 -0.54 -0.43 16 6 C -0.01 -0.12 5.10 -27.88 -0.14 -0.26 16 7 C -0.14 -1.82 5.68 -27.88 -0.16 -1.97 16 8 C 0.51 8.44 7.24 -10.98 -0.08 8.36 16 9 O -0.56 -10.07 12.25 5.56 0.07 -10.00 16 10 N -0.69 -12.40 4.04 -47.50 -0.19 -12.59 16 11 C 0.16 2.98 0.45 -131.70 -0.06 2.92 16 12 C 0.07 1.19 5.68 37.16 0.21 1.40 16 13 O -0.56 -9.89 12.98 -35.23 -0.46 -10.35 16 14 C -0.12 -2.15 4.52 -26.69 -0.12 -2.27 16 15 C -0.13 -2.27 5.93 -26.61 -0.16 -2.42 16 16 C 0.14 2.93 6.51 -3.71 -0.02 2.91 16 17 N -0.59 -14.09 2.85 -172.32 -0.49 -14.59 16 18 C -0.26 -6.77 9.58 -15.06 -0.14 -6.91 16 19 H 0.06 1.67 7.85 -52.49 -0.41 1.25 16 20 C 0.01 0.23 5.04 -17.43 -0.09 0.14 16 21 N -0.90 -25.35 11.10 55.49 0.62 -24.73 16 22 Si 0.90 21.13 29.57 -169.99 -5.03 16.11 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 C 0.18 4.07 3.75 -3.71 -0.01 4.06 16 27 N -0.28 -3.73 12.04 33.71 0.41 -3.33 16 28 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.20 1.53 8.06 -52.49 -0.42 1.11 16 32 H 0.09 1.10 8.10 -51.92 -0.42 0.68 16 33 H 0.09 1.02 8.09 -51.93 -0.42 0.60 16 34 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.10 1.31 8.14 -51.93 -0.42 0.88 16 36 H 0.41 7.82 8.43 -40.82 -0.34 7.48 16 37 H 0.06 1.06 6.16 -51.93 -0.32 0.74 16 38 H 0.04 0.71 8.14 -51.92 -0.42 0.28 16 39 H 0.37 4.66 9.12 45.56 0.42 5.07 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.07 1.30 6.25 -51.93 -0.32 0.98 16 42 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.06 1.05 7.53 -51.93 -0.39 0.66 16 44 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.05 1.06 7.94 -51.93 -0.41 0.65 16 46 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 47 H 0.10 2.74 5.88 -51.93 -0.31 2.43 16 48 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 385.51 15.07 5.81 5.81 Total: -1.00 -33.23 385.51 -6.53 -39.75 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -6.72 Total: 12.60 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: -0.84 Total: 6.44 kcal Atomic # 7 Polarization: -61.00 SS G_CDS: 0.64 Total: -60.36 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.39 Total: -20.35 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.11 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.23 -6.53 -39.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733587310.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.243 kcal (2) G-P(sol) polarization free energy of solvation -33.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds