Wall clock time and date at job start Tue Mar 31 2020 21:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28599 * 124.62238 * 2 1 4 4 C 1.31377 * 108.72366 * 180.26968 * 3 2 1 5 5 C 1.39677 * 105.89899 * 359.97438 * 4 3 2 6 6 C 1.50693 * 127.05027 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.47180 * 124.97962 * 6 5 4 8 8 C 1.50706 * 109.47053 * 179.97438 * 7 6 5 9 9 O 1.21275 * 120.00139 * 0.02562 * 8 7 6 10 10 N 1.34772 * 119.99594 * 179.97438 * 8 7 6 11 11 C 1.46497 * 119.99915 * 174.88229 * 10 8 7 12 12 C 1.53001 * 109.49661 * 302.88208 * 11 10 8 13 13 O 1.42898 * 109.47253 * 300.67580 * 12 11 10 14 14 C 1.53042 * 109.49763 * 62.94127 * 11 10 8 15 15 C 1.53042 * 109.53426 * 58.58717 * 14 11 10 16 16 C 1.53197 * 109.31389 * 61.36582 * 15 14 11 17 17 N 1.46924 * 108.77532 * 305.36600 * 16 15 14 18 18 C 1.36931 * 120.63020 * 233.62974 * 17 16 15 19 19 H 1.08000 * 120.00364 * 31.67963 * 18 17 16 20 20 C 1.38814 * 120.00217 * 211.68040 * 18 17 16 21 21 N 1.31621 * 119.99737 * 11.00261 * 20 18 17 22 22 Si 1.86803 * 120.00097 * 191.00955 * 20 18 17 23 23 H 1.48496 * 109.47049 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47213 * 119.99769 * 22 20 18 25 25 H 1.48498 * 109.47026 * 239.99769 * 22 20 18 26 26 C 1.46928 * 118.73940 * 53.60344 * 17 16 15 27 27 N 1.28601 * 124.61850 * 180.30924 * 2 1 3 28 28 H 1.09003 * 109.46694 * 269.69769 * 1 2 3 29 29 H 1.09003 * 109.47169 * 29.69295 * 1 2 3 30 30 H 1.08996 * 109.47406 * 149.69672 * 1 2 3 31 31 H 1.07997 * 127.05165 * 179.97438 * 4 3 2 32 32 H 1.09008 * 109.47431 * 244.98083 * 6 5 4 33 33 H 1.08996 * 109.47352 * 4.97855 * 6 5 4 34 34 H 1.08997 * 109.46617 * 300.00113 * 7 6 5 35 35 H 1.08999 * 109.46913 * 60.00229 * 7 6 5 36 36 H 0.97005 * 120.00280 * 354.88745 * 10 8 7 37 37 H 1.08992 * 109.47833 * 60.68118 * 12 11 10 38 38 H 1.09013 * 109.46986 * 180.68656 * 12 11 10 39 39 H 0.96692 * 114.00420 * 180.02562 * 13 12 11 40 40 H 1.08999 * 109.46420 * 178.60561 * 14 11 10 41 41 H 1.08994 * 109.46219 * 298.56873 * 14 11 10 42 42 H 1.09002 * 109.49774 * 181.31732 * 15 14 11 43 43 H 1.08996 * 109.50211 * 301.41425 * 15 14 11 44 44 H 1.08998 * 109.58171 * 65.15332 * 16 15 14 45 45 H 1.08997 * 109.58780 * 185.43444 * 16 15 14 46 46 H 0.97001 * 119.99662 * 179.97438 * 21 20 18 47 47 H 1.08998 * 109.58919 * 186.60525 * 26 17 16 48 48 H 1.09002 * 109.58199 * 66.18299 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1956 1.0583 0.0000 4 6 3.4591 0.6984 -0.0059 5 6 3.4591 -0.6984 -0.0090 6 6 4.6618 -1.6063 -0.0164 7 6 4.5758 -2.5763 1.1638 8 6 5.7783 -3.4847 1.1560 9 8 6.6213 -3.3675 0.2920 10 7 5.9174 -4.4266 2.1099 11 6 7.0257 -5.3821 2.0397 12 6 6.9683 -6.1338 0.7084 13 8 5.7210 -6.8233 0.6040 14 6 8.3550 -4.6311 2.1453 15 6 8.3993 -3.8517 3.4617 16 6 8.3035 -4.8324 4.6347 17 7 7.1010 -5.6590 4.4630 18 6 6.1717 -5.7551 5.4640 19 1 6.0028 -4.9188 6.1263 20 6 5.4464 -6.9273 5.6277 21 7 5.7950 -8.0139 4.9717 22 14 3.9757 -6.9627 6.7789 23 1 3.7945 -5.6224 7.3919 24 1 2.7564 -7.3263 6.0132 25 1 4.2073 -7.9679 7.8471 26 6 6.9144 -6.3801 3.1965 27 7 2.1956 -1.0583 -0.0057 28 1 -0.3633 -0.0054 1.0277 29 1 -0.3634 0.8927 -0.5091 30 1 -0.3634 -0.8872 -0.5185 31 1 4.3211 1.3491 -0.0078 32 1 4.6858 -2.1701 -0.9490 33 1 5.5690 -1.0084 0.0701 34 1 4.5519 -2.0125 2.0963 35 1 3.6687 -3.1743 1.0772 36 1 5.2836 -4.4719 2.8428 37 1 7.0612 -5.4244 -0.1138 38 1 7.7860 -6.8532 0.6618 39 1 5.6153 -7.3230 -0.2170 40 1 9.1785 -5.3447 2.1180 41 1 8.4477 -3.9377 1.3095 42 1 9.3363 -3.2985 3.5256 43 1 7.5617 -3.1552 3.5006 44 1 9.1867 -5.4709 4.6500 45 1 8.2374 -4.2775 5.5705 46 1 5.2885 -8.8331 5.0864 47 1 5.9292 -6.8464 3.1832 48 1 7.6843 -7.1450 3.0947 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733587310.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:54 Heat of formation + Delta-G solvation = 17.456055 kcal Electronic energy + Delta-G solvation = -30545.068157 eV Core-core repulsion = 26444.352647 eV Total energy + Delta-G solvation = -4100.715510 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.49353 -41.35136 -39.00756 -37.33629 -35.83993 -35.28615 -34.17377 -33.83795 -32.72103 -31.85182 -31.24510 -28.52285 -27.30044 -26.60284 -25.73157 -23.94162 -23.27559 -22.51281 -21.79153 -20.99009 -20.04103 -18.78187 -18.36515 -18.13417 -17.90679 -17.65103 -16.97340 -16.51758 -16.30084 -15.80027 -15.67368 -15.31293 -15.25591 -14.90397 -14.79816 -14.39744 -14.33218 -14.09129 -13.99045 -13.70834 -13.55666 -13.42109 -13.03483 -12.95996 -12.83435 -12.74537 -12.60686 -12.49079 -12.16552 -11.93409 -11.91071 -11.76606 -11.63793 -11.44358 -11.23948 -11.15791 -10.98747 -10.53992 -10.33320 -10.01986 -9.71272 -8.58620 -7.82890 -5.34287 0.82897 1.44410 1.47600 1.50370 1.54033 1.59272 1.85544 2.44914 2.52656 3.18579 3.32838 3.38890 3.68752 3.74765 3.91723 4.14360 4.16825 4.22081 4.30354 4.30972 4.31707 4.40469 4.41507 4.49953 4.53674 4.57221 4.66533 4.74615 4.84779 4.87334 4.90499 4.99954 5.02919 5.10216 5.17536 5.22309 5.25486 5.34490 5.39139 5.54042 5.66676 5.79425 5.80344 5.85159 6.45239 6.85820 6.96518 7.18727 7.35955 7.45874 7.87532 8.42179 9.22210 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010721 B = 0.003408 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2610.972362 B = 8214.864225 C = 9435.207209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.165 5.165 3 N -0.309 5.309 4 C -0.025 4.025 5 C -0.004 4.004 6 C 0.001 3.999 7 C -0.125 4.125 8 C 0.517 3.483 9 O -0.573 6.573 10 N -0.691 5.691 11 C 0.160 3.840 12 C 0.073 3.927 13 O -0.579 6.579 14 C -0.114 4.114 15 C -0.115 4.115 16 C 0.138 3.862 17 N -0.604 5.604 18 C -0.260 4.260 19 H 0.067 0.933 20 C -0.041 4.041 21 N -0.930 5.930 22 Si 0.962 3.038 23 H -0.265 1.265 24 H -0.293 1.293 25 H -0.296 1.296 26 C 0.193 3.807 27 N -0.308 5.308 28 H 0.101 0.899 29 H 0.120 0.880 30 H 0.113 0.887 31 H 0.225 0.775 32 H 0.079 0.921 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.401 0.599 37 H 0.064 0.936 38 H 0.050 0.950 39 H 0.387 0.613 40 H 0.062 0.938 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.053 0.947 44 H 0.012 0.988 45 H 0.054 0.946 46 H 0.248 0.752 47 H 0.069 0.931 48 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.173 14.654 -11.704 19.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.067 5.067 3 N -0.151 5.151 4 C -0.206 4.206 5 C -0.166 4.166 6 C -0.039 4.039 7 C -0.166 4.166 8 C 0.305 3.695 9 O -0.455 6.455 10 N -0.340 5.340 11 C 0.072 3.928 12 C -0.006 4.006 13 O -0.386 6.386 14 C -0.152 4.152 15 C -0.154 4.154 16 C 0.013 3.987 17 N -0.327 5.327 18 C -0.390 4.390 19 H 0.085 0.915 20 C -0.237 4.237 21 N -0.575 5.575 22 Si 0.791 3.209 23 H -0.189 1.189 24 H -0.220 1.220 25 H -0.223 1.223 26 C 0.066 3.934 27 N -0.151 5.151 28 H 0.119 0.881 29 H 0.138 0.862 30 H 0.131 0.869 31 H 0.241 0.759 32 H 0.098 0.902 33 H 0.123 0.877 34 H 0.117 0.883 35 H 0.110 0.890 36 H 0.236 0.764 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.236 0.764 40 H 0.081 0.919 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.072 0.928 44 H 0.030 0.970 45 H 0.073 0.927 46 H 0.057 0.943 47 H 0.087 0.913 48 H 0.019 0.981 Dipole moment (debyes) X Y Z Total from point charges -6.183 14.855 -11.675 19.880 hybrid contribution -0.020 -1.048 0.582 1.199 sum -6.203 13.807 -11.092 18.766 Atomic orbital electron populations 1.22503 0.68212 1.07230 1.06261 1.48393 1.10116 0.98842 1.49334 1.74001 1.04578 1.16667 1.19868 1.25169 0.95009 0.94722 1.05710 1.23355 0.92489 0.94811 1.05935 1.19504 0.91955 0.94414 0.98034 1.21524 0.96341 0.97412 1.01280 1.20817 0.87494 0.80559 0.80611 1.90554 1.44352 1.71880 1.38669 1.45875 1.29782 1.31376 1.26959 1.20996 0.87266 0.89562 0.94983 1.22505 0.85808 0.94651 0.97601 1.86539 1.37773 1.68889 1.45382 1.21702 0.95186 0.99513 0.98837 1.21779 1.01406 0.97698 0.94468 1.21106 0.88406 0.92306 0.96865 1.44208 1.20807 1.54993 1.12666 1.19453 1.13943 0.96258 1.09333 0.91530 1.25836 1.02874 0.94714 1.00316 1.70133 1.40928 1.00512 1.45935 0.85291 0.79537 0.77685 0.78424 1.18941 1.21959 1.22298 1.20614 1.00256 0.90098 0.82402 1.73994 1.04402 1.16511 1.20233 0.88068 0.86202 0.86855 0.75855 0.90216 0.87733 0.88307 0.89015 0.76417 0.91801 0.93194 0.76445 0.91939 0.90429 0.90431 0.92818 0.96961 0.92705 0.94254 0.91310 0.98128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.05 11.57 127.77 1.48 2.53 16 2 N -0.17 -3.53 4.35 -206.56 -0.90 -4.43 16 3 N -0.31 -6.95 12.05 -56.87 -0.69 -7.64 16 4 C -0.02 -0.50 12.15 85.11 1.03 0.53 16 5 C 0.00 -0.09 6.61 42.97 0.28 0.20 16 6 C 0.00 0.01 5.10 29.85 0.15 0.17 16 7 C -0.13 -3.17 5.68 29.85 0.17 -3.00 16 8 C 0.52 16.28 7.24 87.66 0.63 16.91 16 9 O -0.57 -19.56 12.25 -3.02 -0.04 -19.60 16 10 N -0.69 -24.56 4.04 -422.58 -1.71 -26.27 16 11 C 0.16 6.05 0.45 3.68 0.00 6.05 16 12 C 0.07 2.54 5.68 71.98 0.41 2.95 16 13 O -0.58 -20.40 12.98 -148.98 -1.93 -22.33 16 14 C -0.11 -3.91 4.52 30.62 0.14 -3.77 16 15 C -0.11 -3.86 5.93 30.67 0.18 -3.67 16 16 C 0.14 5.61 6.51 86.36 0.56 6.17 16 17 N -0.60 -28.96 2.85 -699.10 -1.99 -30.95 16 18 C -0.26 -13.60 9.58 84.04 0.80 -12.80 16 19 H 0.07 3.41 7.85 -2.91 -0.02 3.38 16 20 C -0.04 -2.23 5.04 84.86 0.43 -1.80 16 21 N -0.93 -53.89 11.10 21.65 0.24 -53.65 16 22 Si 0.96 43.88 29.57 68.60 2.03 45.90 16 23 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 24 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 25 H -0.30 -13.68 7.11 99.48 0.71 -12.98 16 26 C 0.19 9.07 3.75 86.36 0.32 9.40 16 27 N -0.31 -7.70 12.04 -47.25 -0.57 -8.27 16 28 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.23 2.90 8.06 -2.91 -0.02 2.87 16 32 H 0.08 1.91 8.10 -2.38 -0.02 1.89 16 33 H 0.10 2.07 8.09 -2.39 -0.02 2.05 16 34 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.40 15.36 8.43 -92.70 -0.78 14.58 16 37 H 0.06 2.17 6.16 -2.39 -0.01 2.16 16 38 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 39 H 0.39 9.60 9.12 -74.06 -0.68 8.93 16 40 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.08 2.63 6.25 -2.39 -0.01 2.61 16 42 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.05 1.86 7.53 -2.39 -0.02 1.84 16 44 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 45 H 0.05 2.16 7.94 -2.39 -0.02 2.14 16 46 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 47 H 0.07 3.75 5.88 -2.39 -0.01 3.74 16 48 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 Total: -1.00 -71.21 385.51 0.58 -70.62 By element: Atomic # 1 Polarization: 37.21 SS G_CDS: -0.47 Total: 36.75 kcal Atomic # 6 Polarization: 13.27 SS G_CDS: 6.60 Total: 19.87 kcal Atomic # 7 Polarization: -125.60 SS G_CDS: -5.61 Total: -131.21 kcal Atomic # 8 Polarization: -39.96 SS G_CDS: -1.97 Total: -41.93 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -71.21 0.58 -70.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733587310.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.079 kcal (2) G-P(sol) polarization free energy of solvation -71.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds