Wall clock time and date at job start Tue Mar 31 2020 21:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.28605 * 124.62083 * 2 1 4 4 C 1.31372 * 108.71940 * 179.97438 * 3 2 1 5 5 C 1.39670 * 105.90412 * 359.97438 * 4 3 2 6 6 C 1.50703 * 127.05154 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.46912 * 125.00235 * 6 5 4 8 8 C 1.50703 * 109.46912 * 179.97438 * 7 6 5 9 9 O 1.21278 * 119.99985 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00161 * 179.97438 * 8 7 6 11 11 C 1.46927 * 120.62690 * 359.72483 * 10 8 7 12 12 C 1.52764 * 109.00591 * 233.58001 * 11 10 8 13 13 C 1.53038 * 109.38398 * 305.59101 * 12 11 10 14 14 O 1.42902 * 109.44540 * 301.22475 * 13 12 11 15 15 C 1.53002 * 109.46021 * 181.26089 * 13 12 11 16 16 N 1.46502 * 109.46943 * 59.92945 * 15 13 12 17 17 C 1.36941 * 119.99753 * 179.97438 * 16 15 13 18 18 H 1.07996 * 120.00154 * 0.02562 * 17 16 15 19 19 C 1.38815 * 119.99996 * 180.02562 * 17 16 15 20 20 N 1.31620 * 119.99985 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 120.00055 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.46927 * 90.00000 * 21 19 17 23 23 H 1.48495 * 109.47497 * 210.00321 * 21 19 17 24 24 H 1.48507 * 109.47124 * 330.00240 * 21 19 17 25 25 C 1.53037 * 109.53876 * 61.23747 * 13 12 11 26 26 C 1.46923 * 120.63085 * 180.02562 * 10 8 7 27 27 N 1.28609 * 124.62119 * 180.23874 * 2 1 3 28 28 H 1.09002 * 109.46694 * 90.03139 * 1 2 3 29 29 H 1.09000 * 109.47073 * 210.02681 * 1 2 3 30 30 H 1.08998 * 109.47481 * 330.02902 * 1 2 3 31 31 H 1.08005 * 127.04451 * 180.02562 * 4 3 2 32 32 H 1.09002 * 109.47152 * 5.00007 * 6 5 4 33 33 H 1.09001 * 109.46980 * 245.00107 * 6 5 4 34 34 H 1.09001 * 109.47194 * 299.99742 * 7 6 5 35 35 H 1.08992 * 109.47399 * 59.99914 * 7 6 5 36 36 H 1.08994 * 109.58928 * 353.41559 * 11 10 8 37 37 H 1.08998 * 109.59054 * 113.84259 * 11 10 8 38 38 H 1.09005 * 109.56273 * 185.55024 * 12 11 10 39 39 H 1.09000 * 109.35802 * 65.50097 * 12 11 10 40 40 H 0.96702 * 114.00348 * 300.06237 * 14 13 12 41 41 H 1.09004 * 109.47210 * 179.97438 * 15 13 12 42 42 H 1.08991 * 109.47013 * 299.93009 * 15 13 12 43 43 H 0.96998 * 120.00431 * 0.02562 * 16 15 13 44 44 H 0.97006 * 119.99825 * 180.02562 * 20 19 17 45 45 H 1.09003 * 109.49280 * 178.68176 * 25 13 12 46 46 H 1.09003 * 109.49450 * 58.59227 * 25 13 12 47 47 H 1.09005 * 109.58150 * 246.15632 * 26 10 8 48 48 H 1.08996 * 109.58821 * 6.58293 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1956 1.0583 0.0000 4 6 3.4591 0.6984 0.0006 5 6 3.4591 -0.6983 0.0015 6 6 4.6619 -1.6063 0.0019 7 6 4.5706 -2.5731 1.1842 8 6 5.7731 -3.4815 1.1842 9 8 6.6199 -3.3666 0.3236 10 7 5.9080 -4.4210 2.1411 11 6 4.8941 -4.5676 3.1943 12 6 5.5800 -4.5025 4.5578 13 6 6.6998 -5.5443 4.6132 14 8 6.1512 -6.8447 4.3899 15 6 7.3675 -5.5021 5.9892 16 7 6.3728 -5.7964 7.0238 17 6 6.7417 -5.8156 8.3425 18 1 7.7657 -5.6134 8.6198 19 6 5.7994 -6.0950 9.3228 20 7 6.1539 -6.1130 10.5902 21 14 4.0284 -6.4455 8.8432 22 1 3.8569 -7.9026 8.6135 23 1 3.1235 -6.0067 9.9357 24 1 3.6969 -5.7059 7.5988 25 6 7.7389 -5.2368 3.5326 26 6 7.0750 -5.3135 2.1547 27 7 2.1957 -1.0583 -0.0044 28 1 -0.3633 -0.0006 -1.0277 29 1 -0.3633 -0.8897 0.5142 30 1 -0.3634 0.8902 0.5134 31 1 4.3210 1.3492 0.0011 32 1 5.5688 -1.0081 0.0909 33 1 4.6900 -2.1724 -0.9291 34 1 4.5425 -2.0070 2.1152 35 1 3.6639 -3.1713 1.0952 36 1 4.1652 -3.7612 3.1147 37 1 4.3917 -5.5289 3.0867 38 1 4.8522 -4.7084 5.3427 39 1 6.0011 -3.5077 4.7033 40 1 5.4838 -7.1069 5.0388 41 1 8.1647 -6.2444 6.0291 42 1 7.7863 -4.5104 6.1596 43 1 5.4532 -5.9784 6.7748 44 1 5.4954 -6.3086 11.2753 45 1 8.5478 -5.9654 3.5880 46 1 8.1397 -4.2351 3.6879 47 1 6.7543 -6.3371 1.9603 48 1 7.7844 -4.9991 1.3893 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733887280.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:33 Heat of formation + Delta-G solvation = 38.092186 kcal Electronic energy + Delta-G solvation = -29417.267223 eV Core-core repulsion = 25317.446562 eV Total energy + Delta-G solvation = -4099.820660 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.85650 -40.47092 -38.70856 -35.72400 -35.17478 -34.19122 -33.30127 -32.36466 -31.84710 -31.17649 -30.69889 -28.24193 -27.04046 -25.19677 -23.51738 -23.43864 -22.66284 -21.68840 -20.92867 -20.22550 -18.96895 -18.09211 -17.75941 -17.24232 -17.07762 -16.17371 -15.92089 -15.63724 -15.11682 -14.97272 -14.64482 -14.45188 -14.36546 -14.05241 -13.73678 -13.50969 -13.38084 -13.25894 -13.17951 -13.01856 -12.59184 -12.53287 -12.21671 -12.05786 -11.94896 -11.68777 -11.43837 -11.25754 -11.20134 -11.16410 -11.09052 -10.96479 -10.54101 -10.35608 -10.25866 -9.88573 -9.67601 -9.56748 -9.42543 -9.01321 -8.64432 -7.35796 -5.85455 -3.22709 1.48471 1.99510 2.09659 2.54318 2.92110 3.23639 3.28729 3.36597 3.73912 4.23977 4.36316 4.48527 4.51696 4.56398 4.59191 4.67280 4.80712 4.83340 4.84048 4.96674 4.98998 5.01433 5.08668 5.26373 5.31510 5.42149 5.44058 5.49665 5.50529 5.60994 5.69899 5.73144 5.83110 5.85420 5.88443 5.97045 5.99235 6.13531 6.23638 6.35612 6.46953 6.51157 6.57875 7.33336 7.81279 7.92635 8.00811 8.07836 8.32076 9.09034 9.80914 9.98594 11.32803 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012204 B = 0.002576 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.717712 B =10867.150270 C =12455.720476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.161 5.161 3 N -0.291 5.291 4 C -0.021 4.021 5 C 0.005 3.995 6 C -0.012 4.012 7 C -0.135 4.135 8 C 0.517 3.483 9 O -0.548 6.548 10 N -0.607 5.607 11 C 0.111 3.889 12 C -0.161 4.161 13 C 0.126 3.874 14 O -0.557 6.557 15 C 0.133 3.867 16 N -0.752 5.752 17 C -0.246 4.246 18 H 0.091 0.909 19 C 0.005 3.995 20 N -0.932 5.932 21 Si 0.884 3.116 22 H -0.282 1.282 23 H -0.290 1.290 24 H -0.279 1.279 25 C -0.116 4.116 26 C 0.117 3.883 27 N -0.286 5.286 28 H 0.088 0.912 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.198 0.802 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.377 0.623 41 H 0.038 0.962 42 H 0.034 0.966 43 H 0.356 0.644 44 H 0.260 0.740 45 H 0.084 0.916 46 H 0.079 0.921 47 H 0.075 0.925 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.872 10.383 -23.366 27.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.062 5.062 3 N -0.132 5.132 4 C -0.203 4.203 5 C -0.158 4.158 6 C -0.052 4.052 7 C -0.175 4.175 8 C 0.305 3.695 9 O -0.426 6.426 10 N -0.340 5.340 11 C -0.012 4.012 12 C -0.199 4.199 13 C 0.085 3.915 14 O -0.364 6.364 15 C 0.006 3.994 16 N -0.400 5.400 17 C -0.376 4.376 18 H 0.109 0.891 19 C -0.191 4.191 20 N -0.579 5.579 21 Si 0.715 3.285 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.206 1.206 25 C -0.155 4.155 26 C -0.005 4.005 27 N -0.129 5.129 28 H 0.107 0.893 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.215 0.785 32 H 0.113 0.887 33 H 0.108 0.892 34 H 0.113 0.887 35 H 0.116 0.884 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.103 0.897 39 H 0.096 0.904 40 H 0.225 0.775 41 H 0.056 0.944 42 H 0.052 0.948 43 H 0.190 0.810 44 H 0.071 0.929 45 H 0.103 0.897 46 H 0.097 0.903 47 H 0.093 0.907 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.303 10.487 -24.118 27.897 hybrid contribution -0.945 -0.197 0.647 1.162 sum -10.249 10.290 -23.471 27.601 Atomic orbital electron populations 1.22117 0.70267 1.05911 1.04870 1.47915 1.08874 0.99368 1.50023 1.74050 1.04024 1.16120 1.19055 1.24699 0.94463 0.94726 1.06437 1.23218 0.92586 0.94243 1.05736 1.19627 0.91756 0.94828 0.98963 1.21645 0.97569 0.97696 1.00610 1.20580 0.87588 0.80424 0.80896 1.90679 1.43727 1.70746 1.37461 1.48130 1.23774 1.34545 1.27531 1.21650 0.90239 1.02622 0.86697 1.22508 0.99679 1.01046 0.96694 1.21385 0.92566 0.82579 0.95007 1.86423 1.60560 1.33324 1.56071 1.21296 0.92692 0.99038 0.86378 1.42643 1.06862 1.86896 1.03554 1.19029 0.96927 1.40879 0.80728 0.89143 1.24694 0.97605 1.01683 0.95091 1.69698 1.33765 1.55507 0.98943 0.86573 0.86380 0.78233 0.77347 1.20876 1.21611 1.20567 1.21836 0.97539 1.02724 0.93357 1.21520 0.87511 0.93874 0.97561 1.73999 1.03626 1.15631 1.19618 0.89348 0.87883 0.87942 0.78506 0.88708 0.89246 0.88731 0.88382 0.89948 0.90682 0.89737 0.90377 0.77491 0.94423 0.94790 0.81038 0.92947 0.89747 0.90251 0.90678 0.89185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.49 11.57 59.84 0.69 1.18 16 2 N -0.16 -1.51 4.35 -16.64 -0.07 -1.58 16 3 N -0.29 -2.99 12.05 30.67 0.37 -2.62 16 4 C -0.02 -0.19 12.15 -17.22 -0.21 -0.40 16 5 C 0.00 0.05 6.61 -82.25 -0.54 -0.50 16 6 C -0.01 -0.11 5.10 -27.88 -0.14 -0.25 16 7 C -0.13 -1.24 4.03 -27.88 -0.11 -1.35 16 8 C 0.52 6.17 7.70 -10.98 -0.08 6.08 16 9 O -0.55 -8.08 15.39 5.56 0.09 -8.00 16 10 N -0.61 -7.11 2.98 -173.06 -0.52 -7.63 16 11 C 0.11 1.20 6.08 -3.93 -0.02 1.17 16 12 C -0.16 -2.09 4.91 -26.83 -0.13 -2.22 16 13 C 0.13 1.80 0.71 -90.58 -0.06 1.74 16 14 O -0.56 -8.21 11.71 -35.23 -0.41 -8.63 16 15 C 0.13 2.43 5.40 -4.04 -0.02 2.41 16 16 N -0.75 -16.55 4.87 -59.91 -0.29 -16.84 16 17 C -0.25 -6.71 10.47 -15.06 -0.16 -6.87 16 18 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 19 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 20 N -0.93 -28.62 13.97 55.49 0.78 -27.85 16 21 Si 0.88 20.91 27.74 -169.99 -4.71 16.19 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.28 -5.98 6.52 56.52 0.37 -5.61 16 25 C -0.12 -1.46 5.11 -26.64 -0.14 -1.59 16 26 C 0.12 1.43 6.19 -3.74 -0.02 1.41 16 27 N -0.29 -3.01 12.05 33.71 0.41 -2.60 16 28 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.20 1.16 8.06 -52.48 -0.42 0.74 16 32 H 0.09 0.77 8.09 -51.93 -0.42 0.35 16 33 H 0.09 0.85 8.10 -51.93 -0.42 0.43 16 34 H 0.09 0.80 7.68 -51.93 -0.40 0.40 16 35 H 0.10 0.86 7.95 -51.93 -0.41 0.45 16 36 H 0.08 0.74 5.93 -51.93 -0.31 0.43 16 37 H 0.07 0.81 7.81 -51.93 -0.41 0.40 16 38 H 0.08 1.21 6.82 -51.93 -0.35 0.85 16 39 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.38 5.32 7.85 45.56 0.36 5.68 16 41 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.36 7.37 3.44 -40.82 -0.14 7.23 16 44 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 45 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 46 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 47 H 0.07 0.94 7.81 -51.93 -0.41 0.54 16 48 H 0.09 1.13 7.00 -51.93 -0.36 0.76 16 LS Contribution 385.42 15.07 5.81 5.81 Total: -1.00 -35.37 385.42 -6.28 -41.66 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -6.67 Total: 11.22 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -1.05 Total: 0.87 kcal Atomic # 7 Polarization: -59.79 SS G_CDS: 0.67 Total: -59.12 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: -0.33 Total: -16.62 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.71 Total: 16.19 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.37 -6.28 -41.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733887280.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.750 kcal (2) G-P(sol) polarization free energy of solvation -35.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds