Wall clock time and date at job start Tue Mar 31 2020 21:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.28605 * 124.62083 * 2 1 4 4 C 1.31372 * 108.71940 * 179.97438 * 3 2 1 5 5 C 1.39670 * 105.90412 * 359.97438 * 4 3 2 6 6 C 1.50703 * 127.05154 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.46912 * 125.00235 * 6 5 4 8 8 C 1.50703 * 109.46912 * 179.97438 * 7 6 5 9 9 O 1.21278 * 119.99985 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00161 * 179.97438 * 8 7 6 11 11 C 1.46927 * 120.62690 * 359.72483 * 10 8 7 12 12 C 1.52764 * 109.00591 * 233.58001 * 11 10 8 13 13 C 1.53038 * 109.38398 * 305.59101 * 12 11 10 14 14 O 1.42902 * 109.44540 * 301.22475 * 13 12 11 15 15 C 1.53002 * 109.46021 * 181.26089 * 13 12 11 16 16 N 1.46502 * 109.46943 * 59.92945 * 15 13 12 17 17 C 1.36941 * 119.99753 * 179.97438 * 16 15 13 18 18 H 1.07996 * 120.00154 * 0.02562 * 17 16 15 19 19 C 1.38815 * 119.99996 * 180.02562 * 17 16 15 20 20 N 1.31620 * 119.99985 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 120.00055 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.46927 * 90.00000 * 21 19 17 23 23 H 1.48495 * 109.47497 * 210.00321 * 21 19 17 24 24 H 1.48507 * 109.47124 * 330.00240 * 21 19 17 25 25 C 1.53037 * 109.53876 * 61.23747 * 13 12 11 26 26 C 1.46923 * 120.63085 * 180.02562 * 10 8 7 27 27 N 1.28609 * 124.62119 * 180.23874 * 2 1 3 28 28 H 1.09002 * 109.46694 * 90.03139 * 1 2 3 29 29 H 1.09000 * 109.47073 * 210.02681 * 1 2 3 30 30 H 1.08998 * 109.47481 * 330.02902 * 1 2 3 31 31 H 1.08005 * 127.04451 * 180.02562 * 4 3 2 32 32 H 1.09002 * 109.47152 * 5.00007 * 6 5 4 33 33 H 1.09001 * 109.46980 * 245.00107 * 6 5 4 34 34 H 1.09001 * 109.47194 * 299.99742 * 7 6 5 35 35 H 1.08992 * 109.47399 * 59.99914 * 7 6 5 36 36 H 1.08994 * 109.58928 * 353.41559 * 11 10 8 37 37 H 1.08998 * 109.59054 * 113.84259 * 11 10 8 38 38 H 1.09005 * 109.56273 * 185.55024 * 12 11 10 39 39 H 1.09000 * 109.35802 * 65.50097 * 12 11 10 40 40 H 0.96702 * 114.00348 * 300.06237 * 14 13 12 41 41 H 1.09004 * 109.47210 * 179.97438 * 15 13 12 42 42 H 1.08991 * 109.47013 * 299.93009 * 15 13 12 43 43 H 0.96998 * 120.00431 * 0.02562 * 16 15 13 44 44 H 0.97006 * 119.99825 * 180.02562 * 20 19 17 45 45 H 1.09003 * 109.49280 * 178.68176 * 25 13 12 46 46 H 1.09003 * 109.49450 * 58.59227 * 25 13 12 47 47 H 1.09005 * 109.58150 * 246.15632 * 26 10 8 48 48 H 1.08996 * 109.58821 * 6.58293 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1956 1.0583 0.0000 4 6 3.4591 0.6984 0.0006 5 6 3.4591 -0.6983 0.0015 6 6 4.6619 -1.6063 0.0019 7 6 4.5706 -2.5731 1.1842 8 6 5.7731 -3.4815 1.1842 9 8 6.6199 -3.3666 0.3236 10 7 5.9080 -4.4210 2.1411 11 6 4.8941 -4.5676 3.1943 12 6 5.5800 -4.5025 4.5578 13 6 6.6998 -5.5443 4.6132 14 8 6.1512 -6.8447 4.3899 15 6 7.3675 -5.5021 5.9892 16 7 6.3728 -5.7964 7.0238 17 6 6.7417 -5.8156 8.3425 18 1 7.7657 -5.6134 8.6198 19 6 5.7994 -6.0950 9.3228 20 7 6.1539 -6.1130 10.5902 21 14 4.0284 -6.4455 8.8432 22 1 3.8569 -7.9026 8.6135 23 1 3.1235 -6.0067 9.9357 24 1 3.6969 -5.7059 7.5988 25 6 7.7389 -5.2368 3.5326 26 6 7.0750 -5.3135 2.1547 27 7 2.1957 -1.0583 -0.0044 28 1 -0.3633 -0.0006 -1.0277 29 1 -0.3633 -0.8897 0.5142 30 1 -0.3634 0.8902 0.5134 31 1 4.3210 1.3492 0.0011 32 1 5.5688 -1.0081 0.0909 33 1 4.6900 -2.1724 -0.9291 34 1 4.5425 -2.0070 2.1152 35 1 3.6639 -3.1713 1.0952 36 1 4.1652 -3.7612 3.1147 37 1 4.3917 -5.5289 3.0867 38 1 4.8522 -4.7084 5.3427 39 1 6.0011 -3.5077 4.7033 40 1 5.4838 -7.1069 5.0388 41 1 8.1647 -6.2444 6.0291 42 1 7.7863 -4.5104 6.1596 43 1 5.4532 -5.9784 6.7748 44 1 5.4954 -6.3086 11.2753 45 1 8.5478 -5.9654 3.5880 46 1 8.1397 -4.2351 3.6879 47 1 6.7543 -6.3371 1.9603 48 1 7.7844 -4.9991 1.3893 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733887280.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:31 Heat of formation + Delta-G solvation = 10.956832 kcal Electronic energy + Delta-G solvation = -29418.443900 eV Core-core repulsion = 25317.446562 eV Total energy + Delta-G solvation = -4100.997338 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -44.50639 -41.46404 -39.82660 -36.90907 -35.87342 -35.83501 -33.94140 -33.64040 -33.07814 -32.25105 -31.92049 -29.03845 -28.23615 -26.12906 -24.91952 -24.45863 -23.31173 -23.08083 -21.82318 -21.21848 -20.01140 -19.90865 -18.49970 -17.96201 -17.75911 -17.35064 -16.86239 -16.75493 -16.52452 -16.07954 -15.75643 -15.62561 -15.28127 -15.04915 -14.82610 -14.60041 -14.45316 -14.38013 -14.09084 -13.79117 -13.64922 -13.48852 -13.46989 -13.17347 -12.99713 -12.81971 -12.73686 -12.57076 -12.28168 -12.16514 -12.11563 -11.94105 -11.87896 -11.78816 -11.36623 -11.24166 -11.01851 -10.90971 -10.69424 -10.05616 -9.62514 -9.34356 -8.03115 -5.38921 0.81827 1.36168 1.42143 1.43956 1.50502 1.52626 1.63601 2.03263 2.48565 3.14532 3.20685 3.31338 3.45473 3.48875 3.71456 3.79567 3.85794 3.98106 4.11425 4.16096 4.17979 4.31249 4.34108 4.36145 4.39734 4.49413 4.57623 4.58335 4.65218 4.73718 4.77341 4.84048 4.86432 4.87429 5.00358 5.04680 5.06014 5.12826 5.18806 5.31159 5.32825 5.54239 5.73581 5.78181 6.18458 6.42960 6.71778 7.05797 7.16489 7.34636 7.77462 7.98337 9.18319 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012204 B = 0.002576 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.717712 B =10867.150270 C =12455.720476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.164 5.164 3 N -0.312 5.312 4 C -0.027 4.027 5 C -0.004 4.004 6 C -0.005 4.005 7 C -0.125 4.125 8 C 0.516 3.484 9 O -0.579 6.579 10 N -0.607 5.607 11 C 0.116 3.884 12 C -0.157 4.157 13 C 0.135 3.865 14 O -0.559 6.559 15 C 0.131 3.869 16 N -0.748 5.748 17 C -0.238 4.238 18 H 0.050 0.950 19 C -0.066 4.066 20 N -0.985 5.985 21 Si 0.958 3.042 22 H -0.275 1.275 23 H -0.299 1.299 24 H -0.239 1.239 25 C -0.112 4.112 26 C 0.123 3.877 27 N -0.303 5.303 28 H 0.103 0.897 29 H 0.115 0.885 30 H 0.116 0.884 31 H 0.222 0.778 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.381 0.619 41 H 0.024 0.976 42 H 0.031 0.969 43 H 0.367 0.633 44 H 0.258 0.742 45 H 0.086 0.914 46 H 0.083 0.917 47 H 0.073 0.927 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.095 10.875 -25.317 29.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.065 5.065 3 N -0.154 5.154 4 C -0.208 4.208 5 C -0.166 4.166 6 C -0.045 4.045 7 C -0.166 4.166 8 C 0.306 3.694 9 O -0.460 6.460 10 N -0.340 5.340 11 C -0.007 4.007 12 C -0.196 4.196 13 C 0.094 3.906 14 O -0.366 6.366 15 C 0.004 3.996 16 N -0.396 5.396 17 C -0.369 4.369 18 H 0.069 0.931 19 C -0.257 4.257 20 N -0.635 5.635 21 Si 0.784 3.216 22 H -0.201 1.201 23 H -0.226 1.226 24 H -0.163 1.163 25 C -0.150 4.150 26 C 0.000 4.000 27 N -0.147 5.147 28 H 0.121 0.879 29 H 0.134 0.866 30 H 0.134 0.866 31 H 0.238 0.762 32 H 0.119 0.881 33 H 0.099 0.901 34 H 0.126 0.874 35 H 0.124 0.876 36 H 0.125 0.875 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.229 0.771 41 H 0.042 0.958 42 H 0.049 0.951 43 H 0.202 0.798 44 H 0.067 0.933 45 H 0.104 0.896 46 H 0.102 0.898 47 H 0.092 0.908 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -11.531 10.983 -26.123 30.594 hybrid contribution -0.144 -0.340 1.259 1.312 sum -11.674 10.643 -24.863 29.458 Atomic orbital electron populations 1.22511 0.68181 1.07255 1.06299 1.48388 1.10105 0.98835 1.49221 1.74035 1.04670 1.16801 1.19850 1.25162 0.94943 0.94974 1.05745 1.23315 0.92550 0.94615 1.06102 1.19555 0.91842 0.94675 0.98453 1.21608 0.96340 0.97316 1.01297 1.21024 0.87859 0.80298 0.80218 1.90669 1.45050 1.71570 1.38664 1.48195 1.23747 1.34308 1.27723 1.21702 0.90020 1.04046 0.84900 1.22455 0.98924 1.00294 0.97925 1.21286 0.93323 0.83176 0.92815 1.86435 1.60669 1.33466 1.56053 1.21437 0.92082 0.98184 0.87858 1.42503 1.08114 1.86716 1.02248 1.18964 0.95282 1.39441 0.83216 0.93147 1.25611 1.03091 1.02188 0.94809 1.69907 1.35544 1.57570 1.00527 0.85387 0.79326 0.78644 0.78264 1.20118 1.22609 1.16327 1.21811 0.97160 1.03033 0.93042 1.21409 0.87763 0.93951 0.96866 1.73954 1.04149 1.16396 1.20168 0.87885 0.86640 0.86568 0.76177 0.88112 0.90128 0.87448 0.87571 0.87492 0.90049 0.90408 0.90366 0.77077 0.95774 0.95074 0.79839 0.93306 0.89574 0.89841 0.90822 0.89575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.67 11.57 127.77 1.48 2.15 16 2 N -0.16 -2.78 4.35 -206.56 -0.90 -3.68 16 3 N -0.31 -5.91 12.05 -56.87 -0.69 -6.59 16 4 C -0.03 -0.44 12.15 85.11 1.03 0.59 16 5 C 0.00 -0.07 6.61 42.97 0.28 0.22 16 6 C -0.01 -0.09 5.10 29.85 0.15 0.06 16 7 C -0.13 -1.97 4.03 29.85 0.12 -1.85 16 8 C 0.52 11.18 7.70 87.66 0.67 11.86 16 9 O -0.58 -16.28 15.39 -3.02 -0.05 -16.33 16 10 N -0.61 -12.69 2.98 -819.83 -2.44 -15.13 16 11 C 0.12 2.10 6.08 86.22 0.52 2.62 16 12 C -0.16 -3.63 4.91 30.53 0.15 -3.48 16 13 C 0.14 3.60 0.71 -10.77 -0.01 3.60 16 14 O -0.56 -15.14 11.71 -148.98 -1.74 -16.88 16 15 C 0.13 4.68 5.40 86.38 0.47 5.15 16 16 N -0.75 -32.10 4.87 -343.45 -1.67 -33.78 16 17 C -0.24 -13.16 10.47 84.03 0.88 -12.28 16 18 H 0.05 3.12 8.06 -2.91 -0.02 3.10 16 19 C -0.07 -3.74 5.50 84.86 0.47 -3.28 16 20 N -0.99 -62.12 13.97 21.65 0.30 -61.82 16 21 Si 0.96 42.32 27.74 68.60 1.90 44.22 16 22 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 23 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 24 H -0.24 -8.89 6.52 99.48 0.65 -8.25 16 25 C -0.11 -2.62 5.11 30.66 0.16 -2.47 16 26 C 0.12 2.76 6.19 86.35 0.53 3.29 16 27 N -0.30 -5.82 12.05 -47.25 -0.57 -6.39 16 28 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.22 2.16 8.06 -2.91 -0.02 2.14 16 32 H 0.10 1.47 8.09 -2.39 -0.02 1.45 16 33 H 0.08 1.43 8.10 -2.39 -0.02 1.41 16 34 H 0.11 1.45 7.68 -2.39 -0.02 1.43 16 35 H 0.11 1.54 7.95 -2.39 -0.02 1.52 16 36 H 0.11 1.46 5.93 -2.39 -0.01 1.44 16 37 H 0.08 1.44 7.81 -2.39 -0.02 1.42 16 38 H 0.08 1.93 6.82 -2.38 -0.02 1.92 16 39 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.38 9.66 7.85 -74.06 -0.58 9.07 16 41 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.37 14.21 3.44 -92.71 -0.32 13.89 16 44 H 0.26 15.48 8.31 -92.70 -0.77 14.71 16 45 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 46 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 47 H 0.07 1.70 7.81 -2.38 -0.02 1.68 16 48 H 0.09 2.04 7.00 -2.39 -0.02 2.02 16 Total: -1.00 -77.41 385.42 1.09 -76.32 By element: Atomic # 1 Polarization: 33.83 SS G_CDS: 0.03 Total: 33.86 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: 6.91 Total: 6.19 kcal Atomic # 7 Polarization: -121.41 SS G_CDS: -5.97 Total: -127.38 kcal Atomic # 8 Polarization: -31.42 SS G_CDS: -1.79 Total: -33.21 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 1.90 Total: 44.22 kcal Total: -77.41 1.09 -76.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733887280.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.273 kcal (2) G-P(sol) polarization free energy of solvation -77.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds