Wall clock time and date at job start Tue Mar 31 2020 21:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46506 * 119.99706 * 2 1 4 4 C 1.53001 * 109.47114 * 90.00236 * 3 2 1 5 5 H 1.09006 * 109.47121 * 59.99738 * 4 3 2 6 6 O 1.42895 * 109.46955 * 299.99823 * 4 3 2 7 7 C 1.52992 * 109.47148 * 179.97438 * 4 3 2 8 8 N 1.46499 * 109.47267 * 184.99978 * 7 4 3 9 9 C 1.36935 * 119.99938 * 179.97438 * 8 7 4 10 10 H 1.08000 * 120.00518 * 359.72965 * 9 8 7 11 11 C 1.38817 * 119.99990 * 179.97438 * 9 8 7 12 12 N 1.31617 * 119.99869 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99909 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47361 * 0.02562 * 13 11 9 15 15 H 1.48508 * 109.46860 * 120.00310 * 13 11 9 16 16 H 1.48500 * 109.47264 * 240.00123 * 13 11 9 17 17 C 1.34774 * 120.00004 * 179.97438 * 2 1 3 18 18 O 1.21282 * 119.99857 * 179.97438 * 17 2 1 19 19 C 1.50697 * 120.00284 * 0.02562 * 17 2 1 20 20 N 1.46492 * 109.47155 * 179.97438 * 19 17 2 21 21 N 1.29107 * 126.00811 * 269.68967 * 20 19 17 22 22 N 1.29027 * 110.25642 * 179.77740 * 21 20 19 23 23 C 1.32909 * 108.63695 * 0.41599 * 22 21 20 24 24 C 1.34397 * 126.00693 * 90.00200 * 20 19 17 25 25 C 1.50532 * 129.25560 * 0.20503 * 24 20 19 26 26 C 1.53438 * 108.32755 * 163.46151 * 25 24 20 27 27 C 1.53112 * 109.54980 * 49.71862 * 26 25 24 28 28 C 1.50595 * 129.16161 * 179.86412 * 23 22 21 29 29 H 1.08994 * 109.47389 * 90.00310 * 1 2 3 30 30 H 1.09007 * 109.46958 * 210.00004 * 1 2 3 31 31 H 1.09000 * 109.47278 * 329.99740 * 1 2 3 32 32 H 1.08996 * 109.46975 * 329.99704 * 3 2 1 33 33 H 1.08999 * 109.46944 * 210.00253 * 3 2 1 34 34 H 0.96699 * 114.00430 * 299.99811 * 6 4 3 35 35 H 1.09004 * 109.47330 * 64.99881 * 7 4 3 36 36 H 1.09005 * 109.47124 * 305.00085 * 7 4 3 37 37 H 0.96999 * 119.99984 * 359.97438 * 8 7 4 38 38 H 0.96996 * 119.99743 * 179.97438 * 12 11 9 39 39 H 1.09000 * 109.47148 * 299.99649 * 19 17 2 40 40 H 1.08997 * 109.46930 * 59.99789 * 19 17 2 41 41 H 1.08996 * 109.69738 * 283.17183 * 25 24 20 42 42 H 1.08998 * 109.69365 * 43.75447 * 25 24 20 43 43 H 1.09004 * 109.45578 * 169.74229 * 26 25 24 44 44 H 1.09000 * 109.46071 * 289.71377 * 26 25 24 45 45 H 1.09007 * 109.45140 * 49.97281 * 27 26 25 46 46 H 1.09002 * 109.45206 * 169.92394 * 27 26 25 47 47 H 1.08992 * 109.69626 * 43.75575 * 28 23 22 48 48 H 1.09005 * 109.72155 * 283.19338 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4525 1.7105 1.4425 5 1 3.0416 0.9508 1.9563 6 8 1.2039 1.8813 2.1161 7 6 3.2179 3.0351 1.4425 8 7 3.5663 3.3978 2.8185 9 6 4.2592 4.5524 3.0677 10 1 4.5527 5.1934 2.2495 11 6 4.5889 4.8963 4.3715 12 7 4.2360 4.1125 5.3681 13 14 5.5348 6.4709 4.7113 14 1 5.8102 7.1693 3.4301 15 1 4.7274 7.3531 5.5918 16 1 6.8181 6.1424 5.3824 17 6 2.1388 -1.1672 0.0005 18 8 3.3517 -1.1671 0.0001 19 6 1.3854 -2.4723 0.0005 20 7 2.3374 -3.5857 0.0005 21 7 2.8264 -4.1663 -1.0439 22 7 3.6384 -5.1058 -0.6936 23 6 3.6829 -5.1559 0.6338 24 6 2.8508 -4.1862 1.0877 25 6 2.5988 -3.8979 2.5435 26 6 3.0836 -5.1002 3.3644 27 6 4.5051 -5.4738 2.9355 28 6 4.4750 -6.0760 1.5248 29 1 -0.3634 -0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5139 32 1 1.6083 2.0284 -0.5139 33 1 3.1498 1.1385 -0.5139 34 1 0.6267 2.5440 1.7127 35 1 2.5933 3.8158 1.0081 36 1 4.1287 2.9285 0.8531 37 1 3.3062 2.8202 3.5530 38 1 4.4667 4.3526 6.2791 39 1 0.7585 -2.5299 0.8903 40 1 0.7591 -2.5302 -0.8897 41 1 3.1474 -3.0045 2.8414 42 1 1.5321 -3.7466 2.7087 43 1 3.0799 -4.8419 4.4234 44 1 2.4190 -5.9474 3.1949 45 1 5.1308 -4.5812 2.9359 46 1 4.9146 -6.2044 3.6331 47 1 5.4918 -6.1706 1.1440 48 1 4.0011 -7.0572 1.5544 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734531979.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:15 Heat of formation + Delta-G solvation = 24.581412 kcal Electronic energy + Delta-G solvation = -29778.527823 eV Core-core repulsion = 25678.121292 eV Total energy + Delta-G solvation = -4100.406531 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.54296 -40.28978 -37.71577 -37.25977 -35.47562 -34.99782 -34.09187 -31.55920 -30.93498 -30.30983 -29.94258 -28.48766 -27.00871 -25.35458 -24.35303 -23.06067 -22.83527 -21.73653 -21.30477 -19.85902 -19.65344 -17.99013 -17.50150 -17.21686 -16.57610 -16.29039 -16.19711 -15.41079 -15.22135 -15.01533 -14.50728 -14.31726 -14.21908 -14.08578 -14.00953 -13.75836 -13.59070 -13.37729 -13.00254 -12.88395 -12.77156 -12.51139 -12.37170 -12.17750 -11.68693 -11.65095 -11.45504 -11.26450 -11.22341 -10.99418 -10.86564 -10.81913 -10.63969 -10.57690 -10.21084 -10.01945 -9.82391 -9.72033 -8.93520 -8.92714 -8.75072 -6.95981 -5.78276 -3.07914 1.35419 1.94922 2.16571 2.46236 2.71473 3.41547 3.46903 3.49365 3.91269 3.91617 4.11971 4.38387 4.41098 4.49771 4.57744 4.62271 4.64145 4.73993 4.74276 4.86590 5.02313 5.10686 5.13433 5.21143 5.27478 5.30046 5.37263 5.50681 5.55243 5.56118 5.63076 5.65565 5.72461 5.83765 5.87565 5.88459 6.04065 6.09503 6.14396 6.23568 6.37281 6.47468 6.64528 6.94997 7.66268 7.73638 7.88995 8.39683 8.41337 9.51394 10.08117 10.43704 11.44180 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012603 B = 0.002670 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.213401 B =10484.755969 C =11810.669237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.599 5.599 3 C 0.086 3.914 4 C 0.087 3.913 5 H 0.101 0.899 6 O -0.550 6.550 7 C 0.127 3.873 8 N -0.725 5.725 9 C -0.243 4.243 10 H 0.070 0.930 11 C -0.013 4.013 12 N -0.929 5.929 13 Si 0.908 3.092 14 H -0.280 1.280 15 H -0.291 1.291 16 H -0.291 1.291 17 C 0.499 3.501 18 O -0.513 6.513 19 C 0.098 3.902 20 N -0.270 5.270 21 N -0.089 5.089 22 N -0.259 5.259 23 C -0.022 4.022 24 C -0.002 4.002 25 C -0.050 4.050 26 C -0.113 4.113 27 C -0.122 4.122 28 C -0.031 4.031 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.366 0.634 35 H 0.021 0.979 36 H 0.027 0.973 37 H 0.388 0.612 38 H 0.255 0.745 39 H 0.132 0.868 40 H 0.135 0.865 41 H 0.090 0.910 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.068 0.932 45 H 0.071 0.929 46 H 0.076 0.924 47 H 0.083 0.917 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.788 -18.606 -8.831 23.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.333 5.333 3 C -0.037 4.037 4 C 0.026 3.974 5 H 0.118 0.882 6 O -0.355 6.355 7 C -0.002 4.002 8 N -0.370 5.370 9 C -0.374 4.374 10 H 0.088 0.912 11 C -0.209 4.209 12 N -0.578 5.578 13 Si 0.739 3.261 14 H -0.206 1.206 15 H -0.218 1.218 16 H -0.218 1.218 17 C 0.283 3.717 18 O -0.388 6.388 19 C -0.028 4.028 20 N -0.062 5.062 21 N -0.066 5.066 22 N -0.124 5.124 23 C -0.161 4.161 24 C -0.136 4.136 25 C -0.089 4.089 26 C -0.151 4.151 27 C -0.161 4.161 28 C -0.070 4.070 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.113 0.887 34 H 0.213 0.787 35 H 0.038 0.962 36 H 0.044 0.956 37 H 0.222 0.778 38 H 0.065 0.935 39 H 0.150 0.850 40 H 0.153 0.847 41 H 0.109 0.891 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.095 0.905 47 H 0.102 0.898 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.786 -18.925 -10.071 23.998 hybrid contribution -0.015 1.532 1.069 1.868 sum -10.801 -17.393 -9.002 22.366 Atomic orbital electron populations 1.21950 0.78839 1.04342 1.01791 1.47617 1.07273 1.05474 1.72919 1.22304 0.98588 0.83924 0.98835 1.22540 0.85492 0.98482 0.90849 0.88163 1.86622 1.28853 1.62660 1.57324 1.21213 0.96471 0.92533 0.89957 1.42240 1.67189 1.26275 1.01289 1.19259 1.27491 0.98488 0.92182 0.91200 1.24765 1.01565 0.98935 0.95619 1.69687 1.51426 1.38048 0.98614 0.86112 0.79373 0.82885 0.77769 1.20559 1.21813 1.21784 1.20355 0.88369 0.85115 0.77843 1.90842 1.13228 1.86646 1.48065 1.21882 0.90241 0.82811 1.07837 1.46258 1.31203 1.23621 1.05080 1.78563 1.10535 1.06437 1.11089 1.74769 1.12921 1.12732 1.12009 1.21611 1.02223 1.00942 0.91324 1.21802 1.01493 0.98155 0.92132 1.20260 1.02119 1.00522 0.86040 1.21567 0.96937 0.96992 0.99571 1.21665 0.97102 1.01743 0.95541 1.19940 0.99100 0.96023 0.91943 0.92217 0.91257 0.89519 0.89642 0.88670 0.78722 0.96158 0.95553 0.77766 0.93524 0.85005 0.84710 0.89139 0.90260 0.90260 0.91283 0.91067 0.90509 0.89831 0.90127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.42 9.98 59.85 0.60 1.02 16 2 N -0.60 -6.02 2.80 -181.57 -0.51 -6.53 16 3 C 0.09 1.02 5.10 -4.04 -0.02 1.00 16 4 C 0.09 1.35 3.27 -26.73 -0.09 1.26 16 5 H 0.10 1.87 8.14 -51.93 -0.42 1.45 16 6 O -0.55 -8.11 12.01 -35.23 -0.42 -8.53 16 7 C 0.13 2.47 5.90 -4.05 -0.02 2.44 16 8 N -0.73 -18.57 5.55 -59.91 -0.33 -18.90 16 9 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 10 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 11 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 12 N -0.93 -28.45 13.06 55.49 0.72 -27.73 16 13 Si 0.91 22.52 29.55 -169.99 -5.02 17.49 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 16 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 17 C 0.50 6.09 7.74 -10.99 -0.09 6.01 16 18 O -0.51 -8.94 16.01 5.56 0.09 -8.85 16 19 C 0.10 0.86 5.28 -5.20 -0.03 0.83 16 20 N -0.27 -3.41 2.82 -58.44 -0.16 -3.58 16 21 N -0.09 -1.36 13.19 60.35 0.80 -0.57 16 22 N -0.26 -4.09 12.40 33.16 0.41 -3.68 16 23 C -0.02 -0.28 7.11 -83.12 -0.59 -0.87 16 24 C 0.00 -0.03 6.76 -82.50 -0.56 -0.59 16 25 C -0.05 -0.46 5.97 -27.74 -0.17 -0.62 16 26 C -0.11 -0.82 5.90 -26.45 -0.16 -0.97 16 27 C -0.12 -0.97 5.90 -26.46 -0.16 -1.12 16 28 C -0.03 -0.29 6.30 -27.72 -0.17 -0.47 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.26 6.44 -51.93 -0.33 -0.08 16 31 H 0.09 0.48 6.88 -51.93 -0.36 0.13 16 32 H 0.09 0.78 8.07 -51.93 -0.42 0.36 16 33 H 0.09 1.30 7.42 -51.93 -0.39 0.92 16 34 H 0.37 4.09 8.79 45.56 0.40 4.49 16 35 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.39 10.69 7.67 -40.82 -0.31 10.38 16 38 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.13 0.70 6.97 -51.93 -0.36 0.34 16 40 H 0.14 0.80 8.11 -51.93 -0.42 0.38 16 41 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.08 0.55 7.87 -51.93 -0.41 0.14 16 43 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.45 8.12 -51.93 -0.42 0.02 16 45 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 46 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 47 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 393.28 15.07 5.93 5.93 Total: -1.00 -39.01 393.28 -6.99 -46.01 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -6.79 Total: 8.51 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -1.69 Total: 0.43 kcal Atomic # 7 Polarization: -61.91 SS G_CDS: 0.93 Total: -60.98 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: -0.33 Total: -17.39 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -39.01 -6.99 -46.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734531979.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.589 kcal (2) G-P(sol) polarization free energy of solvation -39.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds