Wall clock time and date at job start Tue Mar 31 2020 21:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46506 * 119.99706 * 2 1 4 4 C 1.53001 * 109.47114 * 90.00236 * 3 2 1 5 5 H 1.09006 * 109.47121 * 59.99738 * 4 3 2 6 6 O 1.42895 * 109.46955 * 299.99823 * 4 3 2 7 7 C 1.52992 * 109.47148 * 179.97438 * 4 3 2 8 8 N 1.46499 * 109.47267 * 184.99978 * 7 4 3 9 9 C 1.36935 * 119.99938 * 179.97438 * 8 7 4 10 10 H 1.08000 * 120.00518 * 359.72965 * 9 8 7 11 11 C 1.38817 * 119.99990 * 179.97438 * 9 8 7 12 12 N 1.31617 * 119.99869 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99909 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47361 * 0.02562 * 13 11 9 15 15 H 1.48508 * 109.46860 * 120.00310 * 13 11 9 16 16 H 1.48500 * 109.47264 * 240.00123 * 13 11 9 17 17 C 1.34774 * 120.00004 * 179.97438 * 2 1 3 18 18 O 1.21282 * 119.99857 * 179.97438 * 17 2 1 19 19 C 1.50697 * 120.00284 * 0.02562 * 17 2 1 20 20 N 1.46492 * 109.47155 * 179.97438 * 19 17 2 21 21 N 1.29107 * 126.00811 * 269.68967 * 20 19 17 22 22 N 1.29027 * 110.25642 * 179.77740 * 21 20 19 23 23 C 1.32909 * 108.63695 * 0.41599 * 22 21 20 24 24 C 1.34397 * 126.00693 * 90.00200 * 20 19 17 25 25 C 1.50532 * 129.25560 * 0.20503 * 24 20 19 26 26 C 1.53438 * 108.32755 * 163.46151 * 25 24 20 27 27 C 1.53112 * 109.54980 * 49.71862 * 26 25 24 28 28 C 1.50595 * 129.16161 * 179.86412 * 23 22 21 29 29 H 1.08994 * 109.47389 * 90.00310 * 1 2 3 30 30 H 1.09007 * 109.46958 * 210.00004 * 1 2 3 31 31 H 1.09000 * 109.47278 * 329.99740 * 1 2 3 32 32 H 1.08996 * 109.46975 * 329.99704 * 3 2 1 33 33 H 1.08999 * 109.46944 * 210.00253 * 3 2 1 34 34 H 0.96699 * 114.00430 * 299.99811 * 6 4 3 35 35 H 1.09004 * 109.47330 * 64.99881 * 7 4 3 36 36 H 1.09005 * 109.47124 * 305.00085 * 7 4 3 37 37 H 0.96999 * 119.99984 * 359.97438 * 8 7 4 38 38 H 0.96996 * 119.99743 * 179.97438 * 12 11 9 39 39 H 1.09000 * 109.47148 * 299.99649 * 19 17 2 40 40 H 1.08997 * 109.46930 * 59.99789 * 19 17 2 41 41 H 1.08996 * 109.69738 * 283.17183 * 25 24 20 42 42 H 1.08998 * 109.69365 * 43.75447 * 25 24 20 43 43 H 1.09004 * 109.45578 * 169.74229 * 26 25 24 44 44 H 1.09000 * 109.46071 * 289.71377 * 26 25 24 45 45 H 1.09007 * 109.45140 * 49.97281 * 27 26 25 46 46 H 1.09002 * 109.45206 * 169.92394 * 27 26 25 47 47 H 1.08992 * 109.69626 * 43.75575 * 28 23 22 48 48 H 1.09005 * 109.72155 * 283.19338 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4525 1.7105 1.4425 5 1 3.0416 0.9508 1.9563 6 8 1.2039 1.8813 2.1161 7 6 3.2179 3.0351 1.4425 8 7 3.5663 3.3978 2.8185 9 6 4.2592 4.5524 3.0677 10 1 4.5527 5.1934 2.2495 11 6 4.5889 4.8963 4.3715 12 7 4.2360 4.1125 5.3681 13 14 5.5348 6.4709 4.7113 14 1 5.8102 7.1693 3.4301 15 1 4.7274 7.3531 5.5918 16 1 6.8181 6.1424 5.3824 17 6 2.1388 -1.1672 0.0005 18 8 3.3517 -1.1671 0.0001 19 6 1.3854 -2.4723 0.0005 20 7 2.3374 -3.5857 0.0005 21 7 2.8264 -4.1663 -1.0439 22 7 3.6384 -5.1058 -0.6936 23 6 3.6829 -5.1559 0.6338 24 6 2.8508 -4.1862 1.0877 25 6 2.5988 -3.8979 2.5435 26 6 3.0836 -5.1002 3.3644 27 6 4.5051 -5.4738 2.9355 28 6 4.4750 -6.0760 1.5248 29 1 -0.3634 -0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5139 32 1 1.6083 2.0284 -0.5139 33 1 3.1498 1.1385 -0.5139 34 1 0.6267 2.5440 1.7127 35 1 2.5933 3.8158 1.0081 36 1 4.1287 2.9285 0.8531 37 1 3.3062 2.8202 3.5530 38 1 4.4667 4.3526 6.2791 39 1 0.7585 -2.5299 0.8903 40 1 0.7591 -2.5302 -0.8897 41 1 3.1474 -3.0045 2.8414 42 1 1.5321 -3.7466 2.7087 43 1 3.0799 -4.8419 4.4234 44 1 2.4190 -5.9474 3.1949 45 1 5.1308 -4.5812 2.9359 46 1 4.9146 -6.2044 3.6331 47 1 5.4918 -6.1706 1.1440 48 1 4.0011 -7.0572 1.5544 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734531979.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:14 Heat of formation + Delta-G solvation = -6.700683 kcal Electronic energy + Delta-G solvation = -29779.884317 eV Core-core repulsion = 25678.121292 eV Total energy + Delta-G solvation = -4101.763025 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.48210 -41.23729 -38.95764 -37.98598 -36.56425 -35.94659 -35.82515 -33.29174 -31.87693 -31.22758 -31.03799 -29.49518 -27.92120 -26.72603 -25.13947 -24.72086 -23.65723 -22.96119 -22.52176 -20.65120 -20.50242 -19.27752 -18.84809 -18.37083 -17.67965 -17.20711 -17.20468 -16.57929 -16.44021 -16.18514 -15.90909 -15.59618 -15.03403 -14.91152 -14.85871 -14.82079 -14.58427 -14.50475 -14.33869 -13.89552 -13.67156 -13.55160 -13.29017 -13.09159 -13.00008 -12.81940 -12.67188 -12.59955 -12.28806 -12.18398 -12.05827 -11.99457 -11.86467 -11.85539 -11.55691 -11.37103 -11.24561 -11.02510 -10.78112 -9.85621 -9.69277 -9.05078 -7.97882 -5.27981 0.41126 1.16363 1.27517 1.45120 1.46594 1.47232 1.56457 1.89164 2.52949 3.13280 3.17745 3.33221 3.44101 3.46497 3.66256 3.70099 3.81215 3.87262 3.93759 3.97625 4.06135 4.13861 4.28521 4.40349 4.41641 4.50200 4.52343 4.54646 4.57216 4.64412 4.77768 4.86704 4.87670 4.98076 4.99901 5.05795 5.14868 5.16100 5.19210 5.30918 5.34817 5.42078 5.44669 5.53051 6.14649 6.23167 6.85173 6.88396 7.29630 7.41190 8.04559 8.27522 9.25659 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012603 B = 0.002670 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.213401 B =10484.755969 C =11810.669237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.592 5.592 3 C 0.096 3.904 4 C 0.108 3.892 5 H 0.062 0.938 6 O -0.557 6.557 7 C 0.123 3.877 8 N -0.741 5.741 9 C -0.249 4.249 10 H 0.077 0.923 11 C -0.076 4.076 12 N -0.968 5.968 13 Si 0.976 3.024 14 H -0.265 1.265 15 H -0.290 1.290 16 H -0.294 1.294 17 C 0.492 3.508 18 O -0.579 6.579 19 C 0.095 3.905 20 N -0.269 5.269 21 N -0.122 5.122 22 N -0.297 5.297 23 C -0.039 4.039 24 C -0.005 4.005 25 C -0.050 4.050 26 C -0.109 4.109 27 C -0.120 4.120 28 C -0.031 4.031 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.123 0.877 33 H 0.072 0.928 34 H 0.385 0.615 35 H 0.043 0.957 36 H 0.019 0.981 37 H 0.374 0.626 38 H 0.252 0.748 39 H 0.173 0.827 40 H 0.168 0.832 41 H 0.071 0.929 42 H 0.108 0.892 43 H 0.095 0.905 44 H 0.084 0.916 45 H 0.049 0.951 46 H 0.101 0.899 47 H 0.077 0.923 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.233 -18.451 -8.901 24.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.323 5.323 3 C -0.027 4.027 4 C 0.047 3.953 5 H 0.080 0.920 6 O -0.363 6.363 7 C -0.005 4.005 8 N -0.384 5.384 9 C -0.380 4.380 10 H 0.095 0.905 11 C -0.269 4.269 12 N -0.619 5.619 13 Si 0.804 3.196 14 H -0.189 1.189 15 H -0.216 1.216 16 H -0.222 1.222 17 C 0.278 3.722 18 O -0.458 6.458 19 C -0.028 4.028 20 N -0.061 5.061 21 N -0.099 5.099 22 N -0.161 5.161 23 C -0.179 4.179 24 C -0.139 4.139 25 C -0.089 4.089 26 C -0.147 4.147 27 C -0.158 4.158 28 C -0.070 4.070 29 H 0.104 0.896 30 H 0.113 0.887 31 H 0.110 0.890 32 H 0.141 0.859 33 H 0.090 0.910 34 H 0.234 0.766 35 H 0.061 0.939 36 H 0.037 0.963 37 H 0.206 0.794 38 H 0.060 0.940 39 H 0.190 0.810 40 H 0.185 0.815 41 H 0.089 0.911 42 H 0.126 0.874 43 H 0.113 0.887 44 H 0.103 0.897 45 H 0.068 0.932 46 H 0.120 0.880 47 H 0.096 0.904 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -13.303 -18.744 -10.216 25.153 hybrid contribution 0.683 1.513 1.048 1.963 sum -12.621 -17.231 -9.168 23.243 Atomic orbital electron populations 1.22349 0.75559 1.05962 1.04021 1.47710 1.09121 1.04116 1.71383 1.22066 0.98894 0.85845 0.95944 1.22095 0.85132 0.95260 0.92798 0.92020 1.86588 1.28395 1.63459 1.57905 1.21445 0.96977 0.95210 0.86838 1.42454 1.67177 1.25472 1.03300 1.19683 1.26806 0.99101 0.92451 0.90542 1.25628 1.03240 1.02400 0.95588 1.69846 1.53222 1.40036 0.98762 0.85045 0.77523 0.79062 0.77928 1.18946 1.21642 1.22176 1.20993 0.87821 0.86672 0.76670 1.90820 1.16144 1.87637 1.51230 1.22311 0.89428 0.79748 1.11344 1.46553 1.31082 1.23783 1.04637 1.78444 1.11681 1.07369 1.12396 1.74697 1.13949 1.13770 1.13703 1.22288 1.02742 1.02000 0.90917 1.22353 1.00804 0.97468 0.93317 1.20419 1.03719 1.00542 0.84241 1.21605 0.96449 0.96677 0.99985 1.21677 0.97624 1.01401 0.95131 1.20097 0.98467 0.96395 0.92075 0.89630 0.88706 0.88978 0.85898 0.90960 0.76562 0.93910 0.96288 0.79403 0.93952 0.81005 0.81477 0.91106 0.87403 0.88680 0.89738 0.93230 0.88047 0.90402 0.88228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.45 9.98 127.77 1.28 1.72 16 2 N -0.59 -10.67 2.80 -846.76 -2.37 -13.04 16 3 C 0.10 2.16 5.10 86.38 0.44 2.60 16 4 C 0.11 3.33 3.27 30.59 0.10 3.43 16 5 H 0.06 2.41 8.14 -2.38 -0.02 2.39 16 6 O -0.56 -15.47 12.01 -148.98 -1.79 -17.26 16 7 C 0.12 4.73 5.90 86.38 0.51 5.24 16 8 N -0.74 -38.39 5.55 -343.45 -1.91 -40.29 16 9 C -0.25 -14.08 9.99 84.04 0.84 -13.24 16 10 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 11 C -0.08 -4.44 5.50 84.86 0.47 -3.97 16 12 N -0.97 -60.28 13.06 21.65 0.28 -60.00 16 13 Si 0.98 46.47 29.55 68.60 2.03 48.50 16 14 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 15 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 16 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 17 C 0.49 11.64 7.74 87.66 0.68 12.32 16 18 O -0.58 -21.04 16.01 -3.03 -0.05 -21.09 16 19 C 0.10 1.46 5.28 85.63 0.45 1.91 16 20 N -0.27 -6.66 2.82 -338.80 -0.95 -7.62 16 21 N -0.12 -3.84 13.19 37.02 0.49 -3.35 16 22 N -0.30 -9.74 12.40 -48.99 -0.61 -10.34 16 23 C -0.04 -1.05 7.11 41.75 0.30 -0.75 16 24 C -0.01 -0.12 6.76 41.50 0.28 0.16 16 25 C -0.05 -0.85 5.97 29.94 0.18 -0.67 16 26 C -0.11 -1.37 5.90 30.78 0.18 -1.19 16 27 C -0.12 -1.80 5.90 30.77 0.18 -1.62 16 28 C -0.03 -0.58 6.30 29.95 0.19 -0.39 16 29 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.09 0.23 6.44 -2.38 -0.02 0.21 16 31 H 0.09 0.63 6.88 -2.39 -0.02 0.61 16 32 H 0.12 1.84 8.07 -2.39 -0.02 1.82 16 33 H 0.07 2.00 7.42 -2.39 -0.02 1.99 16 34 H 0.39 7.47 8.79 -74.06 -0.65 6.82 16 35 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 36 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 37 H 0.37 21.14 7.67 -92.71 -0.71 20.43 16 38 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 39 H 0.17 1.16 6.97 -2.39 -0.02 1.14 16 40 H 0.17 1.43 8.11 -2.39 -0.02 1.41 16 41 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.11 1.17 7.87 -2.39 -0.02 1.15 16 43 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.08 0.84 8.12 -2.39 -0.02 0.82 16 45 H 0.05 0.95 8.12 -2.38 -0.02 0.93 16 46 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 48 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 Total: -1.00 -90.26 393.28 0.83 -89.43 By element: Atomic # 1 Polarization: 29.88 SS G_CDS: -0.37 Total: 29.51 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: 6.07 Total: 5.55 kcal Atomic # 7 Polarization: -129.58 SS G_CDS: -5.06 Total: -134.64 kcal Atomic # 8 Polarization: -36.51 SS G_CDS: -1.84 Total: -38.35 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.50 kcal Total: -90.26 0.83 -89.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734531979.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.732 kcal (2) G-P(sol) polarization free energy of solvation -90.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds