Wall clock time and date at job start Tue Mar 31 2020 21:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46497 * 120.00129 * 2 1 4 4 C 1.53009 * 109.47238 * 270.00499 * 3 2 1 5 5 H 1.08997 * 109.46588 * 304.99304 * 4 3 2 6 6 O 1.42896 * 109.47169 * 64.99772 * 4 3 2 7 7 C 1.52998 * 109.47162 * 184.99790 * 4 3 2 8 8 N 1.46499 * 109.47101 * 179.97438 * 7 4 3 9 9 C 1.36931 * 119.99959 * 180.02562 * 8 7 4 10 10 H 1.08006 * 120.00044 * 359.97438 * 9 8 7 11 11 C 1.38814 * 120.00189 * 180.02562 * 9 8 7 12 12 N 1.31615 * 119.99699 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00076 * 180.02562 * 11 9 8 14 14 H 1.48491 * 109.47440 * 59.99847 * 13 11 9 15 15 H 1.48506 * 109.46748 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.46885 * 299.99404 * 13 11 9 17 17 C 1.34777 * 120.00345 * 180.02562 * 2 1 3 18 18 O 1.21283 * 120.00463 * 179.97438 * 17 2 1 19 19 C 1.50700 * 119.99675 * 359.72090 * 17 2 1 20 20 N 1.46499 * 109.47257 * 180.27849 * 19 17 2 21 21 N 1.29105 * 126.00807 * 269.69102 * 20 19 17 22 22 N 1.29028 * 110.26065 * 179.77123 * 21 20 19 23 23 C 1.32905 * 108.62965 * 0.41778 * 22 21 20 24 24 C 1.34401 * 126.00611 * 89.99476 * 20 19 17 25 25 C 1.50533 * 129.25780 * 0.21952 * 24 20 19 26 26 C 1.53431 * 108.32504 * 163.45712 * 25 24 20 27 27 C 1.53110 * 109.55503 * 49.71808 * 26 25 24 28 28 C 1.50605 * 129.15853 * 179.86145 * 23 22 21 29 29 H 1.08997 * 109.47115 * 269.99822 * 1 2 3 30 30 H 1.08995 * 109.47364 * 30.00213 * 1 2 3 31 31 H 1.09002 * 109.47090 * 149.99764 * 1 2 3 32 32 H 1.09000 * 109.46889 * 29.99981 * 3 2 1 33 33 H 1.09001 * 109.47460 * 150.00590 * 3 2 1 34 34 H 0.96704 * 114.00190 * 59.99884 * 6 4 3 35 35 H 1.08997 * 109.47290 * 299.99991 * 7 4 3 36 36 H 1.09003 * 109.47275 * 59.99501 * 7 4 3 37 37 H 0.97000 * 119.99982 * 359.97438 * 8 7 4 38 38 H 0.97007 * 120.00112 * 180.02562 * 12 11 9 39 39 H 1.09009 * 109.47352 * 300.27556 * 19 17 2 40 40 H 1.08998 * 109.47585 * 60.27844 * 19 17 2 41 41 H 1.09008 * 109.68686 * 283.16361 * 25 24 20 42 42 H 1.08995 * 109.69483 * 43.74446 * 25 24 20 43 43 H 1.09005 * 109.45529 * 169.74279 * 26 25 24 44 44 H 1.08993 * 109.45995 * 289.70632 * 26 25 24 45 45 H 1.08994 * 109.45211 * 49.96860 * 27 26 25 46 46 H 1.08997 * 109.45336 * 169.92289 * 27 26 25 47 47 H 1.08993 * 109.69297 * 43.75709 * 28 23 22 48 48 H 1.09006 * 109.72190 * 283.19677 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7105 -1.4426 5 1 2.9642 0.9132 -1.9816 6 8 1.2059 1.9936 -2.0814 7 6 3.3237 2.9681 -1.4444 8 7 3.5683 3.3908 -2.8256 9 6 4.3293 4.5009 -3.0773 10 1 4.7489 5.0653 -2.2576 11 6 4.5606 4.9017 -4.3861 12 7 4.0489 4.2143 -5.3850 13 14 5.5994 6.4159 -4.7295 14 1 6.9602 6.2203 -4.1683 15 1 5.6940 6.6290 -6.1961 16 1 4.9689 7.6025 -4.0971 17 6 2.1389 -1.1672 -0.0005 18 8 3.3517 -1.1672 -0.0010 19 6 1.3854 -2.4723 0.0053 20 7 2.3374 -3.5858 0.0102 21 7 2.8263 -4.1710 -1.0316 22 7 3.6384 -5.1089 -0.6773 23 6 3.6829 -5.1530 0.6502 24 6 2.8509 -4.1815 1.1000 25 6 2.5988 -3.8868 2.5546 26 6 3.0837 -5.0854 3.3807 27 6 4.5052 -5.4608 2.9534 28 6 4.4750 -6.0693 1.5453 29 1 -0.3633 0.0000 1.0276 30 1 -0.3634 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5139 32 1 1.6084 2.0283 0.5138 33 1 3.1500 1.1384 0.5137 34 1 0.6954 2.6950 -1.6541 35 1 2.8120 3.7654 -0.9053 36 1 4.2745 2.7522 -0.9571 37 1 3.1917 2.8837 -3.5618 38 1 4.2108 4.4942 -6.2996 39 1 0.7588 -2.5261 0.8956 40 1 0.7587 -2.5340 -0.8844 41 1 3.1476 -2.9920 2.8485 42 1 1.5321 -3.7347 2.7190 43 1 3.0800 -4.8225 4.4385 44 1 2.4192 -5.9332 3.2149 45 1 5.1308 -4.5683 2.9498 46 1 4.9147 -6.1883 3.6542 47 1 5.4919 -6.1655 1.1649 48 1 4.0012 -7.0504 1.5793 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734531980.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:20 Heat of formation + Delta-G solvation = 25.577963 kcal Electronic energy + Delta-G solvation = -29519.984065 eV Core-core repulsion = 25419.620748 eV Total energy + Delta-G solvation = -4100.363318 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.56757 -40.29065 -37.68809 -37.35869 -35.48557 -35.02219 -34.02933 -31.52841 -30.99431 -30.36611 -29.95346 -28.49057 -26.99589 -25.34503 -24.44228 -23.04976 -22.90826 -21.76063 -21.23927 -19.93447 -19.67957 -17.99441 -17.53132 -17.17691 -16.57743 -16.36820 -16.10372 -15.45523 -15.33579 -14.92250 -14.49392 -14.35398 -14.28230 -14.25229 -14.07599 -13.69745 -13.66817 -13.35968 -12.99447 -12.89383 -12.76810 -12.48229 -12.44502 -12.16261 -11.71319 -11.63434 -11.51645 -11.37830 -11.33006 -10.94951 -10.82111 -10.76768 -10.66615 -10.62629 -10.22531 -10.03384 -9.80326 -9.69335 -8.97375 -8.88789 -8.73982 -6.91902 -5.73508 -3.03518 1.33123 1.93131 2.15276 2.44688 2.71517 3.45029 3.49042 3.50761 3.85712 3.91203 4.06567 4.30083 4.36814 4.45921 4.53010 4.54453 4.64056 4.66623 4.76332 4.87728 4.99698 5.04740 5.09432 5.12359 5.12727 5.22027 5.40059 5.42074 5.50702 5.53826 5.58963 5.59269 5.64555 5.74573 5.82170 5.91069 5.91430 6.09581 6.11721 6.27389 6.35091 6.50423 6.69147 6.94799 7.68510 7.73068 7.94974 8.41200 8.44342 9.55650 10.13075 10.48812 11.48739 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017236 B = 0.002260 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.070203 B =12387.286428 C =12966.726006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.600 5.600 3 C 0.088 3.912 4 C 0.086 3.914 5 H 0.100 0.900 6 O -0.549 6.549 7 C 0.127 3.873 8 N -0.725 5.725 9 C -0.245 4.245 10 H 0.069 0.931 11 C -0.012 4.012 12 N -0.929 5.929 13 Si 0.909 3.091 14 H -0.286 1.286 15 H -0.290 1.290 16 H -0.286 1.286 17 C 0.498 3.502 18 O -0.513 6.513 19 C 0.097 3.903 20 N -0.269 5.269 21 N -0.080 5.080 22 N -0.259 5.259 23 C -0.021 4.021 24 C -0.010 4.010 25 C -0.046 4.046 26 C -0.113 4.113 27 C -0.121 4.121 28 C -0.032 4.032 29 H 0.059 0.941 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.367 0.633 35 H 0.020 0.980 36 H 0.026 0.974 37 H 0.389 0.611 38 H 0.256 0.744 39 H 0.130 0.870 40 H 0.138 0.862 41 H 0.086 0.914 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.076 0.924 47 H 0.084 0.916 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.404 -18.779 23.099 31.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.333 5.333 3 C -0.035 4.035 4 C 0.025 3.975 5 H 0.118 0.882 6 O -0.354 6.354 7 C -0.001 4.001 8 N -0.370 5.370 9 C -0.376 4.376 10 H 0.087 0.913 11 C -0.209 4.209 12 N -0.577 5.577 13 Si 0.739 3.261 14 H -0.212 1.212 15 H -0.216 1.216 16 H -0.213 1.213 17 C 0.283 3.717 18 O -0.388 6.388 19 C -0.028 4.028 20 N -0.061 5.061 21 N -0.058 5.058 22 N -0.123 5.123 23 C -0.160 4.160 24 C -0.144 4.144 25 C -0.086 4.086 26 C -0.151 4.151 27 C -0.159 4.159 28 C -0.071 4.071 29 H 0.077 0.923 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.113 0.887 34 H 0.213 0.787 35 H 0.037 0.963 36 H 0.044 0.956 37 H 0.224 0.776 38 H 0.066 0.934 39 H 0.148 0.852 40 H 0.155 0.845 41 H 0.104 0.896 42 H 0.096 0.904 43 H 0.095 0.905 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.094 0.906 47 H 0.102 0.898 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.440 -19.132 21.109 30.341 hybrid contribution 0.053 1.519 0.807 1.721 sum -10.387 -17.613 21.916 29.974 Atomic orbital electron populations 1.21961 0.78818 1.04605 1.01667 1.47648 1.07313 1.05488 1.72902 1.22310 0.98409 0.83905 0.98904 1.22549 0.85267 0.98357 0.91295 0.88177 1.86634 1.32250 1.58937 1.57541 1.21196 0.96311 0.92757 0.89886 1.42224 1.61798 1.32253 1.00705 1.19162 1.23939 1.02700 0.91808 0.91330 1.24774 1.01109 0.99410 0.95575 1.69674 1.48949 1.40813 0.98293 0.86252 0.80187 0.82694 0.76927 1.21233 1.21621 1.21270 1.20359 0.88371 0.85115 0.77883 1.90843 1.13213 1.86646 1.48052 1.21893 0.90244 0.82798 1.07878 1.46301 1.31118 1.23604 1.05033 1.78660 1.10131 1.05982 1.11022 1.74817 1.12899 1.12833 1.11776 1.21618 1.02151 1.00823 0.91453 1.21736 1.02010 0.98653 0.91964 1.20206 1.01846 1.00210 0.86296 1.21567 0.97108 0.97194 0.99226 1.21651 0.96937 1.01607 0.95736 1.19940 0.99243 0.96115 0.91783 0.92283 0.89383 0.91175 0.89629 0.88714 0.78693 0.96261 0.95603 0.77637 0.93399 0.85198 0.84451 0.89562 0.90395 0.90499 0.91182 0.91216 0.90557 0.89759 0.90075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.42 10.06 59.84 0.60 1.02 16 2 N -0.60 -6.04 2.84 -181.57 -0.52 -6.55 16 3 C 0.09 1.04 5.06 -4.04 -0.02 1.02 16 4 C 0.09 1.40 3.30 -26.73 -0.09 1.31 16 5 H 0.10 1.99 8.14 -51.93 -0.42 1.57 16 6 O -0.55 -8.66 11.91 -35.23 -0.42 -9.08 16 7 C 0.13 2.55 5.92 -4.04 -0.02 2.53 16 8 N -0.72 -19.13 5.49 -59.91 -0.33 -19.45 16 9 C -0.24 -7.08 9.99 -15.06 -0.15 -7.23 16 10 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 11 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 12 N -0.93 -29.21 13.06 55.49 0.72 -28.48 16 13 Si 0.91 22.94 29.55 -169.99 -5.02 17.92 16 14 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 15 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 16 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 17 C 0.50 6.06 7.74 -10.98 -0.09 5.98 16 18 O -0.51 -8.90 16.01 5.55 0.09 -8.81 16 19 C 0.10 0.84 5.28 -5.19 -0.03 0.82 16 20 N -0.27 -3.38 2.82 -58.43 -0.16 -3.54 16 21 N -0.08 -1.30 13.19 60.35 0.80 -0.50 16 22 N -0.26 -4.17 12.40 33.17 0.41 -3.76 16 23 C -0.02 -0.26 7.11 -83.12 -0.59 -0.85 16 24 C -0.01 -0.11 6.76 -82.49 -0.56 -0.67 16 25 C -0.05 -0.32 5.97 -27.74 -0.17 -0.48 16 26 C -0.11 -0.59 5.90 -26.45 -0.16 -0.74 16 27 C -0.12 -0.75 5.90 -26.46 -0.16 -0.91 16 28 C -0.03 -0.27 6.30 -27.71 -0.17 -0.45 16 29 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.09 0.54 7.11 -51.93 -0.37 0.17 16 31 H 0.07 0.29 6.45 -51.93 -0.33 -0.04 16 32 H 0.09 0.77 8.07 -51.93 -0.42 0.35 16 33 H 0.09 1.26 7.42 -51.93 -0.39 0.87 16 34 H 0.37 4.41 9.04 45.56 0.41 4.82 16 35 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.39 11.11 7.54 -40.82 -0.31 10.80 16 38 H 0.26 7.76 8.31 -40.82 -0.34 7.43 16 39 H 0.13 0.54 7.67 -51.92 -0.40 0.14 16 40 H 0.14 0.96 7.41 -51.93 -0.38 0.58 16 41 H 0.09 0.63 8.14 -51.92 -0.42 0.21 16 42 H 0.08 0.35 7.87 -51.93 -0.41 -0.06 16 43 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.07 0.34 8.12 -51.93 -0.42 -0.08 16 45 H 0.07 0.51 8.12 -51.93 -0.42 0.08 16 46 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 47 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 48 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 393.62 15.07 5.93 5.93 Total: -1.00 -40.39 393.62 -6.98 -47.37 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -6.79 Total: 8.07 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -1.69 Total: 0.88 kcal Atomic # 7 Polarization: -63.21 SS G_CDS: 0.92 Total: -62.29 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: -0.33 Total: -17.89 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -40.39 -6.98 -47.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734531980.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.952 kcal (2) G-P(sol) polarization free energy of solvation -40.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds