Wall clock time and date at job start Tue Mar 31 2020 21:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46497 * 120.00129 * 2 1 4 4 C 1.53009 * 109.47238 * 270.00499 * 3 2 1 5 5 H 1.08997 * 109.46588 * 304.99304 * 4 3 2 6 6 O 1.42896 * 109.47169 * 64.99772 * 4 3 2 7 7 C 1.52998 * 109.47162 * 184.99790 * 4 3 2 8 8 N 1.46499 * 109.47101 * 179.97438 * 7 4 3 9 9 C 1.36931 * 119.99959 * 180.02562 * 8 7 4 10 10 H 1.08006 * 120.00044 * 359.97438 * 9 8 7 11 11 C 1.38814 * 120.00189 * 180.02562 * 9 8 7 12 12 N 1.31615 * 119.99699 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00076 * 180.02562 * 11 9 8 14 14 H 1.48491 * 109.47440 * 59.99847 * 13 11 9 15 15 H 1.48506 * 109.46748 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.46885 * 299.99404 * 13 11 9 17 17 C 1.34777 * 120.00345 * 180.02562 * 2 1 3 18 18 O 1.21283 * 120.00463 * 179.97438 * 17 2 1 19 19 C 1.50700 * 119.99675 * 359.72090 * 17 2 1 20 20 N 1.46499 * 109.47257 * 180.27849 * 19 17 2 21 21 N 1.29105 * 126.00807 * 269.69102 * 20 19 17 22 22 N 1.29028 * 110.26065 * 179.77123 * 21 20 19 23 23 C 1.32905 * 108.62965 * 0.41778 * 22 21 20 24 24 C 1.34401 * 126.00611 * 89.99476 * 20 19 17 25 25 C 1.50533 * 129.25780 * 0.21952 * 24 20 19 26 26 C 1.53431 * 108.32504 * 163.45712 * 25 24 20 27 27 C 1.53110 * 109.55503 * 49.71808 * 26 25 24 28 28 C 1.50605 * 129.15853 * 179.86145 * 23 22 21 29 29 H 1.08997 * 109.47115 * 269.99822 * 1 2 3 30 30 H 1.08995 * 109.47364 * 30.00213 * 1 2 3 31 31 H 1.09002 * 109.47090 * 149.99764 * 1 2 3 32 32 H 1.09000 * 109.46889 * 29.99981 * 3 2 1 33 33 H 1.09001 * 109.47460 * 150.00590 * 3 2 1 34 34 H 0.96704 * 114.00190 * 59.99884 * 6 4 3 35 35 H 1.08997 * 109.47290 * 299.99991 * 7 4 3 36 36 H 1.09003 * 109.47275 * 59.99501 * 7 4 3 37 37 H 0.97000 * 119.99982 * 359.97438 * 8 7 4 38 38 H 0.97007 * 120.00112 * 180.02562 * 12 11 9 39 39 H 1.09009 * 109.47352 * 300.27556 * 19 17 2 40 40 H 1.08998 * 109.47585 * 60.27844 * 19 17 2 41 41 H 1.09008 * 109.68686 * 283.16361 * 25 24 20 42 42 H 1.08995 * 109.69483 * 43.74446 * 25 24 20 43 43 H 1.09005 * 109.45529 * 169.74279 * 26 25 24 44 44 H 1.08993 * 109.45995 * 289.70632 * 26 25 24 45 45 H 1.08994 * 109.45211 * 49.96860 * 27 26 25 46 46 H 1.08997 * 109.45336 * 169.92289 * 27 26 25 47 47 H 1.08993 * 109.69297 * 43.75709 * 28 23 22 48 48 H 1.09006 * 109.72190 * 283.19677 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7105 -1.4426 5 1 2.9642 0.9132 -1.9816 6 8 1.2059 1.9936 -2.0814 7 6 3.3237 2.9681 -1.4444 8 7 3.5683 3.3908 -2.8256 9 6 4.3293 4.5009 -3.0773 10 1 4.7489 5.0653 -2.2576 11 6 4.5606 4.9017 -4.3861 12 7 4.0489 4.2143 -5.3850 13 14 5.5994 6.4159 -4.7295 14 1 6.9602 6.2203 -4.1683 15 1 5.6940 6.6290 -6.1961 16 1 4.9689 7.6025 -4.0971 17 6 2.1389 -1.1672 -0.0005 18 8 3.3517 -1.1672 -0.0010 19 6 1.3854 -2.4723 0.0053 20 7 2.3374 -3.5858 0.0102 21 7 2.8263 -4.1710 -1.0316 22 7 3.6384 -5.1089 -0.6773 23 6 3.6829 -5.1530 0.6502 24 6 2.8509 -4.1815 1.1000 25 6 2.5988 -3.8868 2.5546 26 6 3.0837 -5.0854 3.3807 27 6 4.5052 -5.4608 2.9534 28 6 4.4750 -6.0693 1.5453 29 1 -0.3633 0.0000 1.0276 30 1 -0.3634 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5139 32 1 1.6084 2.0283 0.5138 33 1 3.1500 1.1384 0.5137 34 1 0.6954 2.6950 -1.6541 35 1 2.8120 3.7654 -0.9053 36 1 4.2745 2.7522 -0.9571 37 1 3.1917 2.8837 -3.5618 38 1 4.2108 4.4942 -6.2996 39 1 0.7588 -2.5261 0.8956 40 1 0.7587 -2.5340 -0.8844 41 1 3.1476 -2.9920 2.8485 42 1 1.5321 -3.7347 2.7190 43 1 3.0800 -4.8225 4.4385 44 1 2.4192 -5.9332 3.2149 45 1 5.1308 -4.5683 2.9498 46 1 4.9147 -6.1883 3.6542 47 1 5.4919 -6.1655 1.1649 48 1 4.0012 -7.0504 1.5793 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734531980.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:19 Heat of formation + Delta-G solvation = -7.614047 kcal Electronic energy + Delta-G solvation = -29521.423379 eV Core-core repulsion = 25419.620748 eV Total energy + Delta-G solvation = -4101.802631 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.47248 -41.23466 -38.97361 -37.96158 -36.57400 -35.94562 -35.83496 -33.30084 -31.86905 -31.21214 -31.02858 -29.49099 -27.92079 -26.73409 -25.12574 -24.73557 -23.62781 -22.97331 -22.51196 -20.64394 -20.48627 -19.29131 -18.83914 -18.37027 -17.71457 -17.23694 -17.12311 -16.54779 -16.48940 -16.27593 -15.83445 -15.59961 -15.07102 -14.89294 -14.83657 -14.77993 -14.62755 -14.43838 -14.32517 -13.88775 -13.69600 -13.56591 -13.27960 -13.06119 -13.01377 -12.76397 -12.65531 -12.56518 -12.26401 -12.24811 -12.10728 -11.98177 -11.86970 -11.82344 -11.54263 -11.34357 -11.26472 -11.01613 -10.78121 -9.84710 -9.69385 -9.07253 -7.98808 -5.29747 0.43646 1.17983 1.26932 1.43062 1.47639 1.49058 1.53815 1.90891 2.52002 3.15326 3.19126 3.31797 3.41917 3.47286 3.68140 3.71085 3.81199 3.89029 3.95007 4.01297 4.09462 4.11142 4.27664 4.41370 4.42875 4.49121 4.55611 4.57709 4.59864 4.64653 4.78788 4.85418 4.90278 5.00795 5.01732 5.07954 5.12953 5.19406 5.21874 5.31701 5.35945 5.42172 5.45483 5.56372 6.14894 6.21343 6.85288 6.87817 7.27532 7.43655 8.03224 8.25964 9.24523 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017236 B = 0.002260 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.070203 B =12387.286428 C =12966.726006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.593 5.593 3 C 0.099 3.901 4 C 0.104 3.896 5 H 0.054 0.946 6 O -0.559 6.559 7 C 0.123 3.877 8 N -0.743 5.743 9 C -0.251 4.251 10 H 0.079 0.921 11 C -0.079 4.079 12 N -0.971 5.971 13 Si 0.980 3.020 14 H -0.279 1.279 15 H -0.295 1.295 16 H -0.271 1.271 17 C 0.492 3.508 18 O -0.578 6.578 19 C 0.095 3.905 20 N -0.269 5.269 21 N -0.134 5.134 22 N -0.303 5.303 23 C -0.044 4.044 24 C -0.002 4.002 25 C -0.047 4.047 26 C -0.109 4.109 27 C -0.118 4.118 28 C -0.034 4.034 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.128 0.872 33 H 0.078 0.922 34 H 0.386 0.614 35 H 0.046 0.954 36 H 0.018 0.982 37 H 0.373 0.627 38 H 0.252 0.748 39 H 0.186 0.814 40 H 0.154 0.846 41 H 0.083 0.917 42 H 0.112 0.888 43 H 0.103 0.897 44 H 0.078 0.922 45 H 0.054 0.946 46 H 0.100 0.900 47 H 0.073 0.927 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.696 -18.238 26.777 35.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.324 5.324 3 C -0.025 4.025 4 C 0.043 3.957 5 H 0.072 0.928 6 O -0.366 6.366 7 C -0.004 4.004 8 N -0.385 5.385 9 C -0.383 4.383 10 H 0.097 0.903 11 C -0.271 4.271 12 N -0.622 5.622 13 Si 0.808 3.192 14 H -0.205 1.205 15 H -0.221 1.221 16 H -0.196 1.196 17 C 0.278 3.722 18 O -0.458 6.458 19 C -0.029 4.029 20 N -0.061 5.061 21 N -0.111 5.111 22 N -0.166 5.166 23 C -0.184 4.184 24 C -0.136 4.136 25 C -0.086 4.086 26 C -0.147 4.147 27 C -0.156 4.156 28 C -0.073 4.073 29 H 0.115 0.885 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.146 0.854 33 H 0.096 0.904 34 H 0.235 0.765 35 H 0.064 0.936 36 H 0.036 0.964 37 H 0.205 0.795 38 H 0.060 0.940 39 H 0.203 0.797 40 H 0.172 0.828 41 H 0.101 0.899 42 H 0.131 0.869 43 H 0.122 0.878 44 H 0.097 0.903 45 H 0.073 0.927 46 H 0.119 0.881 47 H 0.092 0.908 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -12.800 -18.567 24.831 33.543 hybrid contribution 0.714 1.354 -0.260 1.553 sum -12.086 -17.212 24.570 32.343 Atomic orbital electron populations 1.22355 0.75597 1.05591 1.04430 1.47739 1.09129 1.04158 1.71385 1.22073 0.99108 0.85893 0.95376 1.22155 0.84704 0.95165 0.93694 0.92778 1.86599 1.31773 1.59877 1.58391 1.21435 0.96985 0.95149 0.86827 1.42465 1.61611 1.31683 1.02787 1.19643 1.23352 1.03062 0.92212 0.90330 1.25701 1.03042 1.02907 0.95493 1.69858 1.51016 1.42890 0.98397 0.85127 0.78560 0.79230 0.76315 1.20536 1.22147 1.19629 1.20993 0.87819 0.86656 0.76686 1.90820 1.16112 1.87633 1.51185 1.22323 0.89432 0.79774 1.11323 1.46602 1.30993 1.23754 1.04729 1.78541 1.12037 1.07557 1.12929 1.74722 1.13930 1.13886 1.14111 1.22391 1.03043 1.02218 0.90786 1.22520 1.00382 0.97167 0.93575 1.20485 1.04090 1.00791 0.83207 1.21611 0.96050 0.96763 1.00252 1.21671 0.97998 1.01465 0.94505 1.20126 0.98207 0.96389 0.92543 0.88496 0.89444 0.89345 0.85443 0.90390 0.76488 0.93605 0.96392 0.79510 0.93973 0.79689 0.82843 0.89881 0.86938 0.87843 0.90314 0.92731 0.88110 0.90812 0.88611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.45 10.06 127.77 1.28 1.73 16 2 N -0.59 -10.62 2.84 -846.76 -2.40 -13.02 16 3 C 0.10 2.20 5.06 86.38 0.44 2.64 16 4 C 0.10 3.40 3.30 30.60 0.10 3.50 16 5 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 6 O -0.56 -17.14 11.91 -148.98 -1.77 -18.91 16 7 C 0.12 4.95 5.92 86.38 0.51 5.46 16 8 N -0.74 -39.96 5.49 -343.45 -1.89 -41.84 16 9 C -0.25 -14.60 9.99 84.04 0.84 -13.76 16 10 H 0.08 4.31 7.83 -2.91 -0.02 4.28 16 11 C -0.08 -4.75 5.50 84.86 0.47 -4.29 16 12 N -0.97 -62.65 13.06 21.65 0.28 -62.36 16 13 Si 0.98 47.57 29.55 68.60 2.03 49.60 16 14 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 15 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 16 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 17 C 0.49 11.56 7.74 87.66 0.68 12.24 16 18 O -0.58 -20.86 16.01 -3.04 -0.05 -20.91 16 19 C 0.10 1.45 5.28 85.63 0.45 1.90 16 20 N -0.27 -6.69 2.82 -338.77 -0.95 -7.65 16 21 N -0.13 -4.56 13.19 37.02 0.49 -4.07 16 22 N -0.30 -10.43 12.40 -48.98 -0.61 -11.04 16 23 C -0.04 -1.13 7.11 41.75 0.30 -0.83 16 24 C 0.00 -0.04 6.76 41.50 0.28 0.24 16 25 C -0.05 -0.50 5.97 29.94 0.18 -0.32 16 26 C -0.11 -0.76 5.90 30.78 0.18 -0.58 16 27 C -0.12 -1.27 5.90 30.77 0.18 -1.08 16 28 C -0.03 -0.57 6.30 29.96 0.19 -0.38 16 29 H 0.10 0.07 8.14 -2.39 -0.02 0.05 16 30 H 0.09 0.72 7.11 -2.39 -0.02 0.70 16 31 H 0.09 0.36 6.45 -2.39 -0.02 0.34 16 32 H 0.13 1.78 8.07 -2.39 -0.02 1.76 16 33 H 0.08 2.05 7.42 -2.39 -0.02 2.03 16 34 H 0.39 8.38 9.04 -74.05 -0.67 7.71 16 35 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.37 22.11 7.54 -92.71 -0.70 21.41 16 38 H 0.25 15.68 8.31 -92.70 -0.77 14.91 16 39 H 0.19 0.62 7.67 -2.38 -0.02 0.60 16 40 H 0.15 1.83 7.41 -2.39 -0.02 1.81 16 41 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 42 H 0.11 0.44 7.87 -2.39 -0.02 0.42 16 43 H 0.10 0.25 8.14 -2.38 -0.02 0.23 16 44 H 0.08 0.47 8.12 -2.39 -0.02 0.45 16 45 H 0.05 0.75 8.12 -2.39 -0.02 0.73 16 46 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 47 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 48 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 Total: -1.00 -96.12 393.62 0.83 -95.29 By element: Atomic # 1 Polarization: 28.84 SS G_CDS: -0.38 Total: 28.46 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: 6.08 Total: 6.46 kcal Atomic # 7 Polarization: -134.91 SS G_CDS: -5.08 Total: -139.99 kcal Atomic # 8 Polarization: -38.00 SS G_CDS: -1.82 Total: -39.82 kcal Atomic # 14 Polarization: 47.57 SS G_CDS: 2.03 Total: 49.60 kcal Total: -96.12 0.83 -95.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734531980.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.680 kcal (2) G-P(sol) polarization free energy of solvation -96.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds