Wall clock time and date at job start Tue Mar 31 2020 21:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36937 * 119.99939 * 2 1 4 4 H 1.07997 * 120.00208 * 202.34706 * 3 2 1 5 5 C 1.38811 * 120.00108 * 22.33496 * 3 2 1 6 6 N 1.31625 * 119.99704 * 11.35241 * 5 3 2 7 7 Si 1.86799 * 120.00558 * 191.34901 * 5 3 2 8 8 H 1.48504 * 109.46893 * 60.00104 * 7 5 3 9 9 H 1.48495 * 109.47564 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47002 * 300.00995 * 7 5 3 11 11 C 1.46500 * 120.00086 * 179.97438 * 2 1 3 12 12 C 1.53005 * 109.47163 * 270.00137 * 11 2 1 13 13 C 1.53001 * 109.47033 * 180.02562 * 12 11 2 14 14 N 1.46489 * 109.47206 * 180.02562 * 13 12 11 15 15 C 1.34780 * 120.00275 * 179.97438 * 14 13 12 16 16 O 1.21276 * 119.99681 * 0.02562 * 15 14 13 17 17 C 1.50703 * 120.00122 * 179.97438 * 15 14 13 18 18 N 1.46500 * 109.47184 * 180.02562 * 17 15 14 19 19 N 1.40310 * 126.32466 * 270.03049 * 18 17 15 20 20 C 1.28873 * 108.11768 * 180.35147 * 19 18 17 21 21 N 1.38116 * 108.89413 * 0.80187 * 20 19 18 22 22 C 1.34310 * 108.29836 * 358.28660 * 21 20 19 23 23 O 1.21805 * 126.32572 * 181.84900 * 22 21 20 24 24 C 1.46717 * 124.21640 * 177.64770 * 21 20 19 25 25 C 1.53289 * 108.66142 * 19.13446 * 24 21 20 26 26 C 1.53242 * 109.34935 * 308.25367 * 25 24 21 27 27 C 1.51116 * 127.46105 * 180.91976 * 20 19 18 28 28 H 1.08997 * 109.47566 * 274.20943 * 1 2 3 29 29 H 1.09002 * 109.47429 * 34.22090 * 1 2 3 30 30 H 1.09007 * 109.46684 * 154.21739 * 1 2 3 31 31 H 0.97004 * 119.99697 * 179.97438 * 6 5 3 32 32 H 1.09002 * 109.46695 * 150.00396 * 11 2 1 33 33 H 1.08998 * 109.47314 * 30.00447 * 11 2 1 34 34 H 1.09004 * 109.46788 * 60.00075 * 12 11 2 35 35 H 1.08998 * 109.47259 * 300.00344 * 12 11 2 36 36 H 1.09002 * 109.46850 * 60.00243 * 13 12 11 37 37 H 1.09006 * 109.47222 * 300.00540 * 13 12 11 38 38 H 0.97006 * 120.00224 * 0.02562 * 14 13 12 39 39 H 1.09004 * 109.46711 * 60.00415 * 17 15 14 40 40 H 1.08998 * 109.47315 * 300.00696 * 17 15 14 41 41 H 1.08997 * 109.60643 * 259.38583 * 24 21 20 42 42 H 1.08997 * 109.60610 * 138.88295 * 24 21 20 43 43 H 1.08996 * 109.49463 * 188.28647 * 25 24 21 44 44 H 1.08998 * 109.49086 * 68.20833 * 25 24 21 45 45 H 1.09003 * 109.54284 * 310.91279 * 26 25 24 46 46 H 1.09000 * 109.62643 * 190.67562 * 26 25 24 47 47 H 1.08998 * 109.75208 * 78.15906 * 27 20 19 48 48 H 1.09000 * 109.75212 * 317.47272 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1688 1.2211 -0.3556 5 6 1.5337 2.3430 0.4568 6 7 0.3840 2.2691 1.0933 7 14 2.3365 4.0048 0.1685 8 1 2.4914 4.2331 -1.2907 9 1 1.4847 5.0736 0.7494 10 1 3.6718 4.0288 0.8177 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7098 1.4433 13 6 3.2181 -3.0345 1.4439 14 7 3.4617 -3.4571 2.8252 15 6 4.1242 -4.6046 3.0720 16 8 4.5190 -5.2870 2.1504 17 6 4.3753 -5.0391 4.4930 18 7 5.1082 -6.3075 4.4936 19 7 4.5453 -7.5928 4.4933 20 6 5.5064 -8.4513 4.5015 21 7 6.7102 -7.7747 4.5256 22 6 6.4539 -6.4567 4.4939 23 8 7.2795 -5.5614 4.4708 24 6 8.0225 -8.4277 4.5907 25 6 7.8664 -9.8874 4.1493 26 6 6.7346 -10.5414 4.9491 27 6 5.3930 -9.9581 4.4854 28 1 -0.3634 0.0754 1.0248 29 1 -0.3634 0.8498 -0.5779 30 1 -0.3633 -0.9254 -0.4470 31 1 -0.0463 3.0776 1.4129 32 1 3.1500 -1.1385 -0.5133 33 1 1.6085 -2.0286 -0.5130 34 1 1.5000 -1.8399 1.9571 35 1 3.0415 -0.9499 1.9569 36 1 4.1705 -2.9038 0.9301 37 1 2.6294 -3.7946 0.9301 38 1 3.1456 -2.9115 3.5623 39 1 3.4228 -5.1692 5.0068 40 1 4.9643 -4.2792 5.0066 41 1 8.3979 -8.3931 5.6133 42 1 8.7185 -7.9170 3.9253 43 1 8.7975 -10.4239 4.3313 44 1 7.6277 -9.9224 3.0864 45 1 6.8734 -10.3375 6.0109 46 1 6.7419 -11.6182 4.7804 47 1 5.1725 -10.3001 3.4742 48 1 4.5998 -10.2751 5.1625 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752092969.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:47 Heat of formation + Delta-G solvation = 25.981692 kcal Electronic energy + Delta-G solvation = -28654.636985 eV Core-core repulsion = 24554.291174 eV Total energy + Delta-G solvation = -4100.345811 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.77157 -39.61635 -37.93147 -37.05961 -36.21677 -34.72880 -33.82188 -32.86078 -31.95762 -30.17390 -29.26115 -28.12340 -25.94123 -25.42431 -24.45937 -23.06403 -22.26672 -21.66565 -20.75846 -20.16423 -19.98363 -17.61427 -17.61217 -16.77418 -16.64199 -16.39587 -16.10221 -15.45698 -15.44198 -14.94835 -14.80969 -14.70426 -14.57919 -14.30632 -13.80790 -13.78832 -13.34204 -13.21859 -13.05542 -12.69030 -12.52052 -12.24990 -12.19920 -11.70708 -11.58426 -11.57975 -11.53426 -11.28973 -11.05567 -10.80837 -10.72451 -10.57172 -10.46967 -10.38719 -10.09078 -9.92214 -9.77915 -9.71285 -8.94512 -8.69124 -8.53054 -6.75206 -5.71186 -3.16793 1.42834 1.69879 2.49162 2.58716 2.68998 3.29636 3.40369 3.45136 3.46638 3.82008 4.02198 4.11143 4.20618 4.49858 4.51572 4.68334 4.72098 4.79402 4.90268 4.92473 5.09152 5.13441 5.19095 5.25827 5.29067 5.37703 5.46711 5.54787 5.55315 5.64484 5.83938 5.88887 5.96744 6.15066 6.24187 6.27667 6.45901 6.60655 6.78052 6.85001 7.02674 7.40701 7.41685 7.52888 7.74365 7.82591 7.86785 8.21613 8.41961 9.25893 9.89089 10.37936 11.33959 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.027467 B = 0.001779 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.159423 B =15731.822325 C =16174.982233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.603 5.603 3 C -0.253 4.253 4 H 0.068 0.932 5 C 0.000 4.000 6 N -0.910 5.910 7 Si 0.905 3.095 8 H -0.284 1.284 9 H -0.291 1.291 10 H -0.283 1.283 11 C 0.156 3.844 12 C -0.149 4.149 13 C 0.121 3.879 14 N -0.721 5.721 15 C 0.493 3.507 16 O -0.532 6.532 17 C 0.143 3.857 18 N -0.439 5.439 19 N -0.267 5.267 20 C 0.276 3.724 21 N -0.556 5.556 22 C 0.657 3.343 23 O -0.552 6.552 24 C 0.131 3.869 25 C -0.138 4.138 26 C -0.124 4.124 27 C -0.040 4.040 28 H 0.027 0.973 29 H 0.044 0.956 30 H -0.004 1.004 31 H 0.252 0.748 32 H 0.045 0.955 33 H 0.039 0.961 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.402 0.598 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.082 0.918 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.078 0.922 45 H 0.074 0.926 46 H 0.088 0.912 47 H 0.103 0.897 48 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.947 -28.731 11.729 32.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.325 5.325 3 C -0.383 4.383 4 H 0.086 0.914 5 C -0.198 4.198 6 N -0.555 5.555 7 Si 0.735 3.265 8 H -0.211 1.211 9 H -0.216 1.216 10 H -0.210 1.210 11 C 0.028 3.972 12 C -0.190 4.190 13 C -0.002 4.002 14 N -0.374 5.374 15 C 0.277 3.723 16 O -0.408 6.408 17 C 0.017 3.983 18 N -0.259 5.259 19 N -0.089 5.089 20 C -0.003 4.003 21 N -0.286 5.286 22 C 0.357 3.643 23 O -0.425 6.425 24 C 0.010 3.990 25 C -0.176 4.176 26 C -0.162 4.162 27 C -0.079 4.079 28 H 0.046 0.954 29 H 0.063 0.937 30 H 0.015 0.985 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.237 0.763 39 H 0.143 0.857 40 H 0.143 0.857 41 H 0.100 0.900 42 H 0.110 0.890 43 H 0.112 0.888 44 H 0.097 0.903 45 H 0.093 0.907 46 H 0.106 0.894 47 H 0.121 0.879 48 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 10.678 -28.175 11.070 32.100 hybrid contribution 0.906 1.395 0.320 1.694 sum 11.585 -26.779 11.390 31.322 Atomic orbital electron populations 1.20798 0.82496 0.95567 0.99210 1.43976 1.01960 1.00678 1.85874 1.19192 0.97952 0.85456 1.35708 0.91418 1.25033 0.97730 0.98531 0.98502 1.70061 1.17866 1.27131 1.40478 0.86323 0.78491 0.83731 0.77912 1.21085 1.21650 1.20961 1.20717 0.95979 0.88241 0.92269 1.22558 0.99586 0.93910 1.02991 1.21524 1.00320 0.97144 0.81230 1.46083 1.57677 1.23333 1.10267 1.20874 0.78483 0.81547 0.91426 1.90716 1.50393 1.53813 1.45869 1.21245 0.99238 0.81920 0.95878 1.48333 1.04296 1.03797 1.69441 1.76735 1.20888 0.87765 1.23464 1.24278 0.81175 0.96997 0.97857 1.46044 1.08112 1.06535 1.67895 1.16515 0.83687 0.83020 0.81095 1.91087 1.49717 1.43112 1.58577 1.21791 0.81088 0.93012 1.03151 1.21994 1.00526 0.93577 1.01465 1.21722 0.92846 1.01000 1.00647 1.20499 0.99886 0.82726 1.04832 0.95441 0.93701 0.98533 0.93751 0.93645 0.94281 0.92080 0.91222 0.91799 0.91926 0.76323 0.85669 0.85738 0.90000 0.88992 0.88839 0.90307 0.90706 0.89360 0.87877 0.87624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.08 9.01 59.85 0.54 4.61 16 2 N -0.60 -15.26 2.93 -181.11 -0.53 -15.79 16 3 C -0.25 -7.01 9.67 -15.06 -0.15 -7.16 16 4 H 0.07 1.84 7.84 -52.49 -0.41 1.43 16 5 C 0.00 0.00 5.13 -17.43 -0.09 -0.09 16 6 N -0.91 -26.54 10.59 55.49 0.59 -25.95 16 7 Si 0.91 22.05 29.57 -169.99 -5.03 17.02 16 8 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 9 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 C 0.16 3.20 5.71 -4.04 -0.02 3.18 16 12 C -0.15 -2.67 5.65 -26.73 -0.15 -2.82 16 13 C 0.12 1.91 5.67 -4.05 -0.02 1.88 16 14 N -0.72 -9.81 5.56 -60.30 -0.33 -10.15 16 15 C 0.49 7.37 7.90 -10.98 -0.09 7.28 16 16 O -0.53 -10.31 16.43 5.56 0.09 -10.21 16 17 C 0.14 1.65 6.87 -5.19 -0.04 1.62 16 18 N -0.44 -6.07 3.13 -66.32 -0.21 -6.28 16 19 N -0.27 -3.32 12.51 33.15 0.41 -2.90 16 20 C 0.28 2.64 7.73 -153.65 -1.19 1.46 16 21 N -0.56 -6.02 3.14 -117.44 -0.37 -6.39 16 22 C 0.66 9.82 8.65 -86.78 -0.75 9.07 16 23 O -0.55 -9.95 17.84 5.09 0.09 -9.85 16 24 C 0.13 0.88 6.87 -3.77 -0.03 0.85 16 25 C -0.14 -0.46 5.94 -26.46 -0.16 -0.62 16 26 C -0.12 -0.30 5.96 -26.36 -0.16 -0.45 16 27 C -0.04 -0.17 6.32 -27.44 -0.17 -0.35 16 28 H 0.03 0.73 7.42 -51.93 -0.39 0.34 16 29 H 0.04 1.20 7.19 -51.93 -0.37 0.83 16 30 H 0.00 -0.08 7.84 -51.92 -0.41 -0.49 16 31 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 32 H 0.05 0.92 8.03 -51.93 -0.42 0.50 16 33 H 0.04 0.74 7.86 -51.93 -0.41 0.33 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.40 4.38 8.47 -40.82 -0.35 4.03 16 39 H 0.13 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.12 1.23 8.12 -51.93 -0.42 0.81 16 41 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.09 0.12 8.14 -51.93 -0.42 -0.31 16 44 H 0.08 0.32 8.10 -51.93 -0.42 -0.10 16 45 H 0.07 0.18 8.11 -51.93 -0.42 -0.24 16 46 H 0.09 0.05 8.14 -51.93 -0.42 -0.38 16 47 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 396.96 15.07 5.98 5.98 Total: -1.00 -38.96 396.96 -9.57 -48.53 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -7.80 Total: -2.47 kcal Atomic # 6 Polarization: 20.93 SS G_CDS: -2.47 Total: 18.46 kcal Atomic # 7 Polarization: -67.02 SS G_CDS: -0.44 Total: -67.46 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: 0.18 Total: -20.07 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.02 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -38.96 -9.57 -48.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752092969.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.507 kcal (2) G-P(sol) polarization free energy of solvation -38.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds