Wall clock time and date at job start Tue Mar 31 2020 21:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36937 * 119.99939 * 2 1 4 4 H 1.07997 * 120.00208 * 202.34706 * 3 2 1 5 5 C 1.38811 * 120.00108 * 22.33496 * 3 2 1 6 6 N 1.31625 * 119.99704 * 11.35241 * 5 3 2 7 7 Si 1.86799 * 120.00558 * 191.34901 * 5 3 2 8 8 H 1.48504 * 109.46893 * 60.00104 * 7 5 3 9 9 H 1.48495 * 109.47564 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47002 * 300.00995 * 7 5 3 11 11 C 1.46500 * 120.00086 * 179.97438 * 2 1 3 12 12 C 1.53005 * 109.47163 * 270.00137 * 11 2 1 13 13 C 1.53001 * 109.47033 * 180.02562 * 12 11 2 14 14 N 1.46489 * 109.47206 * 180.02562 * 13 12 11 15 15 C 1.34780 * 120.00275 * 179.97438 * 14 13 12 16 16 O 1.21276 * 119.99681 * 0.02562 * 15 14 13 17 17 C 1.50703 * 120.00122 * 179.97438 * 15 14 13 18 18 N 1.46500 * 109.47184 * 180.02562 * 17 15 14 19 19 N 1.40310 * 126.32466 * 270.03049 * 18 17 15 20 20 C 1.28873 * 108.11768 * 180.35147 * 19 18 17 21 21 N 1.38116 * 108.89413 * 0.80187 * 20 19 18 22 22 C 1.34310 * 108.29836 * 358.28660 * 21 20 19 23 23 O 1.21805 * 126.32572 * 181.84900 * 22 21 20 24 24 C 1.46717 * 124.21640 * 177.64770 * 21 20 19 25 25 C 1.53289 * 108.66142 * 19.13446 * 24 21 20 26 26 C 1.53242 * 109.34935 * 308.25367 * 25 24 21 27 27 C 1.51116 * 127.46105 * 180.91976 * 20 19 18 28 28 H 1.08997 * 109.47566 * 274.20943 * 1 2 3 29 29 H 1.09002 * 109.47429 * 34.22090 * 1 2 3 30 30 H 1.09007 * 109.46684 * 154.21739 * 1 2 3 31 31 H 0.97004 * 119.99697 * 179.97438 * 6 5 3 32 32 H 1.09002 * 109.46695 * 150.00396 * 11 2 1 33 33 H 1.08998 * 109.47314 * 30.00447 * 11 2 1 34 34 H 1.09004 * 109.46788 * 60.00075 * 12 11 2 35 35 H 1.08998 * 109.47259 * 300.00344 * 12 11 2 36 36 H 1.09002 * 109.46850 * 60.00243 * 13 12 11 37 37 H 1.09006 * 109.47222 * 300.00540 * 13 12 11 38 38 H 0.97006 * 120.00224 * 0.02562 * 14 13 12 39 39 H 1.09004 * 109.46711 * 60.00415 * 17 15 14 40 40 H 1.08998 * 109.47315 * 300.00696 * 17 15 14 41 41 H 1.08997 * 109.60643 * 259.38583 * 24 21 20 42 42 H 1.08997 * 109.60610 * 138.88295 * 24 21 20 43 43 H 1.08996 * 109.49463 * 188.28647 * 25 24 21 44 44 H 1.08998 * 109.49086 * 68.20833 * 25 24 21 45 45 H 1.09003 * 109.54284 * 310.91279 * 26 25 24 46 46 H 1.09000 * 109.62643 * 190.67562 * 26 25 24 47 47 H 1.08998 * 109.75208 * 78.15906 * 27 20 19 48 48 H 1.09000 * 109.75212 * 317.47272 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1688 1.2211 -0.3556 5 6 1.5337 2.3430 0.4568 6 7 0.3840 2.2691 1.0933 7 14 2.3365 4.0048 0.1685 8 1 2.4914 4.2331 -1.2907 9 1 1.4847 5.0736 0.7494 10 1 3.6718 4.0288 0.8177 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7098 1.4433 13 6 3.2181 -3.0345 1.4439 14 7 3.4617 -3.4571 2.8252 15 6 4.1242 -4.6046 3.0720 16 8 4.5190 -5.2870 2.1504 17 6 4.3753 -5.0391 4.4930 18 7 5.1082 -6.3075 4.4936 19 7 4.5453 -7.5928 4.4933 20 6 5.5064 -8.4513 4.5015 21 7 6.7102 -7.7747 4.5256 22 6 6.4539 -6.4567 4.4939 23 8 7.2795 -5.5614 4.4708 24 6 8.0225 -8.4277 4.5907 25 6 7.8664 -9.8874 4.1493 26 6 6.7346 -10.5414 4.9491 27 6 5.3930 -9.9581 4.4854 28 1 -0.3634 0.0754 1.0248 29 1 -0.3634 0.8498 -0.5779 30 1 -0.3633 -0.9254 -0.4470 31 1 -0.0463 3.0776 1.4129 32 1 3.1500 -1.1385 -0.5133 33 1 1.6085 -2.0286 -0.5130 34 1 1.5000 -1.8399 1.9571 35 1 3.0415 -0.9499 1.9569 36 1 4.1705 -2.9038 0.9301 37 1 2.6294 -3.7946 0.9301 38 1 3.1456 -2.9115 3.5623 39 1 3.4228 -5.1692 5.0068 40 1 4.9643 -4.2792 5.0066 41 1 8.3979 -8.3931 5.6133 42 1 8.7185 -7.9170 3.9253 43 1 8.7975 -10.4239 4.3313 44 1 7.6277 -9.9224 3.0864 45 1 6.8734 -10.3375 6.0109 46 1 6.7419 -11.6182 4.7804 47 1 5.1725 -10.3001 3.4742 48 1 4.5998 -10.2751 5.1625 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752092969.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:46 Heat of formation + Delta-G solvation = -0.917601 kcal Electronic energy + Delta-G solvation = -28655.803426 eV Core-core repulsion = 24554.291174 eV Total energy + Delta-G solvation = -4101.512252 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.64208 -40.82346 -38.83838 -38.04307 -37.76060 -36.24364 -34.53169 -33.85621 -33.52246 -31.81610 -29.98014 -29.08617 -27.93954 -26.85520 -25.27087 -23.70149 -23.64262 -22.83533 -22.21686 -21.41497 -20.68669 -18.78392 -18.68409 -18.49451 -17.61544 -17.37483 -17.08331 -16.88455 -16.62775 -16.32388 -15.76086 -15.63447 -15.35431 -15.22283 -15.15419 -14.88235 -14.65483 -14.50687 -14.28407 -13.99576 -13.56468 -13.25276 -13.15751 -13.00051 -12.92751 -12.82432 -12.69823 -12.46188 -12.31963 -12.08956 -12.05513 -11.88881 -11.88455 -11.85327 -11.52808 -11.48592 -11.36601 -10.82619 -10.63589 -10.20311 -9.67912 -8.80283 -7.83151 -5.30912 0.56514 0.92127 1.42487 1.44986 1.46254 1.48020 1.54597 1.92168 2.20433 2.51045 3.19402 3.30823 3.55070 3.62808 3.65170 3.74516 3.84250 3.91984 4.08061 4.09451 4.27107 4.32966 4.37696 4.43915 4.45909 4.54492 4.62438 4.76324 4.78836 4.85260 4.87868 4.88966 4.89282 4.99487 5.06022 5.17727 5.27980 5.29150 5.35036 5.35472 5.45648 5.58890 5.63842 5.73666 6.33281 6.40448 6.52801 6.84143 7.07540 7.15721 7.87555 8.30638 9.20180 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.027467 B = 0.001779 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.159423 B =15731.822325 C =16174.982233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.620 5.620 3 C -0.263 4.263 4 H 0.068 0.932 5 C -0.053 4.053 6 N -0.937 5.937 7 Si 0.967 3.033 8 H -0.280 1.280 9 H -0.293 1.293 10 H -0.277 1.277 11 C 0.150 3.850 12 C -0.128 4.128 13 C 0.135 3.865 14 N -0.711 5.711 15 C 0.493 3.507 16 O -0.581 6.581 17 C 0.142 3.858 18 N -0.447 5.447 19 N -0.299 5.299 20 C 0.286 3.714 21 N -0.554 5.554 22 C 0.636 3.364 23 O -0.598 6.598 24 C 0.118 3.882 25 C -0.131 4.131 26 C -0.117 4.117 27 C -0.041 4.041 28 H 0.006 0.994 29 H 0.016 0.984 30 H 0.029 0.971 31 H 0.248 0.752 32 H 0.046 0.954 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.051 0.949 36 H 0.053 0.947 37 H 0.065 0.935 38 H 0.417 0.583 39 H 0.162 0.838 40 H 0.140 0.860 41 H 0.096 0.904 42 H 0.077 0.923 43 H 0.121 0.879 44 H 0.072 0.928 45 H 0.078 0.922 46 H 0.119 0.881 47 H 0.115 0.885 48 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.478 -31.289 12.536 35.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.343 5.343 3 C -0.393 4.393 4 H 0.086 0.914 5 C -0.248 4.248 6 N -0.584 5.584 7 Si 0.796 3.204 8 H -0.206 1.206 9 H -0.219 1.219 10 H -0.203 1.203 11 C 0.023 3.977 12 C -0.168 4.168 13 C 0.010 3.990 14 N -0.364 5.364 15 C 0.278 3.722 16 O -0.460 6.460 17 C 0.017 3.983 18 N -0.266 5.266 19 N -0.121 5.121 20 C 0.008 3.992 21 N -0.282 5.282 22 C 0.336 3.664 23 O -0.475 6.475 24 C -0.002 4.002 25 C -0.168 4.168 26 C -0.155 4.155 27 C -0.080 4.080 28 H 0.024 0.976 29 H 0.035 0.965 30 H 0.048 0.952 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.255 0.745 39 H 0.179 0.821 40 H 0.158 0.842 41 H 0.114 0.886 42 H 0.096 0.904 43 H 0.140 0.860 44 H 0.090 0.910 45 H 0.097 0.903 46 H 0.137 0.863 47 H 0.133 0.867 48 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 11.211 -30.784 11.899 34.856 hybrid contribution 0.770 2.070 0.035 2.209 sum 11.981 -28.714 11.934 33.324 Atomic orbital electron populations 1.20564 0.82589 0.95966 0.97688 1.44198 1.02266 1.01669 1.86149 1.19489 0.98078 0.86710 1.35053 0.91382 1.25763 0.98477 1.01719 0.98822 1.70218 1.19096 1.27495 1.41612 0.85343 0.77660 0.79655 0.77781 1.20628 1.21918 1.20274 1.20885 0.95899 0.86924 0.93948 1.22194 0.99462 0.94341 1.00840 1.21212 0.99402 0.95935 0.82424 1.45924 1.57216 1.23273 1.09962 1.21456 0.77341 0.80955 0.92409 1.90688 1.52400 1.55317 1.47603 1.21466 1.01157 0.81980 0.93719 1.48562 1.04162 1.04910 1.68954 1.76745 1.21863 0.87432 1.26064 1.25388 0.80042 0.98869 0.94951 1.46334 1.09917 1.05429 1.66522 1.16921 0.83930 0.84100 0.81489 1.91023 1.50897 1.44740 1.60852 1.22203 0.79253 0.94863 1.03925 1.22034 1.02504 0.91148 1.01127 1.21761 0.90829 1.02396 1.00509 1.20893 1.01986 0.78904 1.06213 0.97570 0.96477 0.95210 0.94274 0.93594 0.92194 0.92111 0.93020 0.92867 0.91639 0.74549 0.82096 0.84242 0.88583 0.90438 0.86039 0.90963 0.90291 0.86306 0.86663 0.85634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.79 9.01 127.77 1.15 9.94 16 2 N -0.62 -31.24 2.93 -726.92 -2.13 -33.37 16 3 C -0.26 -14.57 9.67 84.03 0.81 -13.76 16 4 H 0.07 3.69 7.84 -2.91 -0.02 3.66 16 5 C -0.05 -2.98 5.13 84.86 0.44 -2.54 16 6 N -0.94 -55.41 10.59 21.65 0.23 -55.18 16 7 Si 0.97 45.56 29.57 68.60 2.03 47.59 16 8 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 9 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 10 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 11 C 0.15 6.02 5.71 86.38 0.49 6.51 16 12 C -0.13 -4.47 5.65 30.60 0.17 -4.30 16 13 C 0.13 4.14 5.67 86.38 0.49 4.63 16 14 N -0.71 -18.79 5.56 -463.07 -2.57 -21.36 16 15 C 0.49 14.62 7.90 87.66 0.69 15.31 16 16 O -0.58 -22.83 16.43 -3.02 -0.05 -22.88 16 17 C 0.14 3.19 6.87 85.63 0.59 3.78 16 18 N -0.45 -12.38 3.13 -481.55 -1.51 -13.88 16 19 N -0.30 -7.22 12.51 -49.05 -0.61 -7.84 16 20 C 0.29 5.13 7.73 137.72 1.06 6.20 16 21 N -0.55 -11.86 3.14 -643.91 -2.02 -13.88 16 22 C 0.64 19.50 8.65 179.01 1.55 21.05 16 23 O -0.60 -22.55 17.84 -4.68 -0.08 -22.64 16 24 C 0.12 1.49 6.87 86.43 0.59 2.08 16 25 C -0.13 -0.53 5.94 30.77 0.18 -0.34 16 26 C -0.12 -0.13 5.96 30.83 0.18 0.06 16 27 C -0.04 -0.24 6.32 30.14 0.19 -0.05 16 28 H 0.01 0.32 7.42 -2.39 -0.02 0.30 16 29 H 0.02 0.90 7.19 -2.39 -0.02 0.89 16 30 H 0.03 1.25 7.84 -2.38 -0.02 1.23 16 31 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 32 H 0.05 1.83 8.03 -2.39 -0.02 1.81 16 33 H 0.06 2.15 7.86 -2.39 -0.02 2.13 16 34 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 35 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 38 H 0.42 8.55 8.47 -92.70 -0.79 7.77 16 39 H 0.16 2.37 8.14 -2.38 -0.02 2.35 16 40 H 0.14 2.68 8.12 -2.39 -0.02 2.66 16 41 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.12 -0.13 8.14 -2.39 -0.02 -0.15 16 44 H 0.07 0.42 8.10 -2.39 -0.02 0.40 16 45 H 0.08 0.08 8.11 -2.39 -0.02 0.06 16 46 H 0.12 -0.47 8.14 -2.39 -0.02 -0.49 16 47 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 48 H 0.13 0.31 8.14 -2.39 -0.02 0.29 16 Total: -1.00 -87.35 396.96 2.06 -85.28 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: 0.18 Total: 9.60 kcal Atomic # 6 Polarization: 39.95 SS G_CDS: 8.60 Total: 48.55 kcal Atomic # 7 Polarization: -136.90 SS G_CDS: -8.61 Total: -145.51 kcal Atomic # 8 Polarization: -45.39 SS G_CDS: -0.13 Total: -45.52 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -87.35 2.06 -85.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752092969.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.364 kcal (2) G-P(sol) polarization free energy of solvation -87.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds