Wall clock time and date at job start Tue Mar 31 2020 20:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46904 * 109.46958 * 2 1 4 4 C 1.46897 * 111.00291 * 59.18424 * 3 2 1 5 5 C 1.52995 * 109.47155 * 66.04794 * 4 3 2 6 6 C 1.53002 * 109.47428 * 180.02562 * 5 4 3 7 7 N 1.46496 * 109.47394 * 179.97438 * 6 5 4 8 8 C 1.34780 * 119.99948 * 180.27395 * 7 6 5 9 9 O 1.21605 * 119.99689 * 359.72751 * 8 7 6 10 10 C 1.47426 * 119.99823 * 179.72621 * 8 7 6 11 11 C 1.41288 * 126.41875 * 359.68658 * 10 8 7 12 12 N 1.30448 * 108.02515 * 179.85930 * 11 10 8 13 13 N 1.39925 * 108.89479 * 0.40600 * 12 11 10 14 14 C 1.46507 * 125.75481 * 179.74152 * 13 12 11 15 15 C 1.34256 * 108.49373 * 359.74164 * 13 12 11 16 16 C 1.46900 * 110.99666 * 295.22835 * 3 2 1 17 17 C 1.50698 * 109.47248 * 288.23881 * 16 3 2 18 18 O 1.21296 * 120.00045 * 354.30505 * 17 16 3 19 19 N 1.34777 * 119.99882 * 174.29778 * 17 16 3 20 20 C 1.37095 * 119.99903 * 180.02562 * 19 17 16 21 21 H 1.08003 * 120.00491 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00097 * 180.02562 * 20 19 17 23 23 N 1.31414 * 120.00150 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00064 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47249 * 90.00183 * 24 22 20 26 26 H 1.48502 * 109.47003 * 209.99491 * 24 22 20 27 27 H 1.48496 * 109.47122 * 329.99654 * 24 22 20 28 28 H 1.08997 * 109.46980 * 60.00131 * 1 2 3 29 29 H 1.09007 * 109.46659 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47296 * 299.99242 * 1 2 3 31 31 H 1.08998 * 109.48056 * 239.99421 * 2 1 3 32 32 H 1.09006 * 109.47130 * 119.99265 * 2 1 3 33 33 H 1.08999 * 109.47004 * 306.04800 * 4 3 2 34 34 H 1.08995 * 109.47126 * 186.05098 * 4 3 2 35 35 H 1.09006 * 109.47343 * 59.99742 * 5 4 3 36 36 H 1.09003 * 109.47117 * 300.00017 * 5 4 3 37 37 H 1.08999 * 109.46959 * 59.99866 * 6 5 4 38 38 H 1.08995 * 109.46897 * 300.00332 * 6 5 4 39 39 H 0.97001 * 119.99795 * 0.02562 * 7 6 5 40 40 H 1.08001 * 125.98511 * 359.97438 * 11 10 8 41 41 H 1.09005 * 109.46695 * 270.00564 * 14 13 12 42 42 H 1.09001 * 109.46795 * 30.00006 * 14 13 12 43 43 H 1.08995 * 109.47667 * 149.99865 * 14 13 12 44 44 H 1.08002 * 126.29094 * 179.97438 * 15 13 12 45 45 H 1.09000 * 109.47250 * 48.24117 * 16 3 2 46 46 H 1.08993 * 109.47161 * 168.24056 * 16 3 2 47 47 H 0.96993 * 120.00320 * 0.02562 * 19 17 16 48 48 H 0.96998 * 120.00043 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5327 2.1156 1.1778 5 6 2.1475 1.5123 2.4422 6 6 1.6399 2.2728 3.6690 7 7 2.2281 1.6947 4.8798 8 6 1.9179 2.2034 6.0887 9 8 1.1537 3.1455 6.1740 10 6 2.5052 1.6178 7.3076 11 6 3.3980 0.5244 7.3666 12 7 3.6912 0.3098 8.6195 13 7 3.0028 1.2359 9.4110 14 6 3.0601 1.3231 10.8723 15 6 2.2809 2.0312 8.6054 16 6 1.6439 2.0761 -1.2406 17 6 2.4639 1.5368 -2.3842 18 8 3.3515 0.7382 -2.1704 19 7 2.2110 1.9418 -3.6446 20 6 2.9566 1.4508 -4.6850 21 1 3.7470 0.7398 -4.4946 22 6 2.6963 1.8687 -5.9843 23 7 1.7349 2.7342 -6.2160 24 14 3.7127 1.2002 -7.4018 25 1 3.0721 -0.0295 -7.9336 26 1 3.7937 2.2208 -8.4774 27 1 5.0803 0.8778 -6.9214 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3634 0.5137 0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 0.4467 2.0388 1.2296 34 1 1.8195 3.1642 1.0990 35 1 3.2336 1.5890 2.3904 36 1 1.8607 0.4636 2.5209 37 1 0.5539 2.1956 3.7206 38 1 1.9263 3.3215 3.5905 39 1 2.8380 0.9435 4.8117 40 1 3.7736 -0.0345 6.5222 41 1 2.2809 0.6951 11.3045 42 1 4.0356 0.9817 11.2186 43 1 2.9064 2.3570 11.1810 44 1 1.6418 2.8446 8.9158 45 1 0.5856 1.9106 -1.4426 46 1 1.8303 3.1445 -1.1321 47 1 1.5014 2.5806 -3.8156 48 1 1.5529 3.0256 -7.1231 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752166693.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:27 Heat of formation + Delta-G solvation = 10.858841 kcal Electronic energy + Delta-G solvation = -27844.899340 eV Core-core repulsion = 23743.897753 eV Total energy + Delta-G solvation = -4101.001587 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.77220 -39.44779 -38.83771 -37.13948 -35.29658 -33.95321 -33.79648 -31.87583 -31.19929 -30.68986 -30.00249 -27.92774 -26.87378 -25.07816 -24.23020 -23.17192 -22.24505 -21.38015 -20.60316 -19.84740 -18.88602 -18.27595 -17.75503 -16.36663 -16.29621 -16.18386 -16.06998 -15.71445 -15.45894 -15.07481 -14.96868 -14.50767 -14.30401 -13.97308 -13.72258 -13.52576 -13.36485 -13.22696 -13.15565 -13.07869 -12.97362 -12.16780 -12.07652 -11.84671 -11.78439 -11.52067 -11.50988 -11.39423 -11.13571 -11.03824 -10.78956 -10.36636 -10.29700 -10.17727 -10.08804 -10.07417 -9.43614 -9.35110 -9.02039 -8.40515 -7.91733 -7.77728 -6.37510 -3.78083 1.12437 1.77289 1.86225 3.02945 3.20413 3.22249 3.28793 3.34830 3.94958 3.97441 4.03156 4.27683 4.29257 4.48751 4.55407 4.72177 4.82447 4.86842 4.97138 5.01226 5.09589 5.13855 5.27157 5.31022 5.34060 5.42930 5.53661 5.58761 5.64208 5.70159 5.77227 5.92686 5.94084 6.03489 6.07358 6.18450 6.28362 6.31005 6.31341 6.36873 6.56726 7.05289 7.31934 7.34936 7.43987 7.59052 8.07938 8.11318 8.67337 9.23104 9.60204 10.12679 10.80406 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.031243 B = 0.001528 C = 0.001507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.974171 B =18314.939021 C =18569.345181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.050 3.950 3 N -0.511 5.511 4 C 0.053 3.947 5 C -0.127 4.127 6 C 0.123 3.877 7 N -0.725 5.725 8 C 0.595 3.405 9 O -0.552 6.552 10 C -0.294 4.294 11 C 0.083 3.917 12 N -0.298 5.298 13 N -0.365 5.365 14 C 0.096 3.904 15 C 0.128 3.872 16 C 0.041 3.959 17 C 0.446 3.554 18 O -0.576 6.576 19 N -0.568 5.568 20 C -0.297 4.297 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.903 5.903 24 Si 0.929 3.071 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.270 1.270 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.039 0.961 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.400 0.600 40 H 0.191 0.809 41 H 0.080 0.920 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.189 0.811 45 H 0.052 0.948 46 H 0.087 0.913 47 H 0.391 0.609 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.407 -1.410 30.393 30.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.078 4.078 3 N -0.234 5.234 4 C -0.075 4.075 5 C -0.166 4.166 6 C -0.001 4.001 7 N -0.375 5.375 8 C 0.382 3.618 9 O -0.431 6.431 10 C -0.309 4.309 11 C -0.105 4.105 12 N -0.118 5.118 13 N -0.144 5.144 14 C -0.045 4.045 15 C -0.024 4.024 16 C -0.090 4.090 17 C 0.231 3.769 18 O -0.460 6.460 19 N -0.205 5.205 20 C -0.427 4.427 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.545 5.545 24 Si 0.756 3.244 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.194 1.194 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.109 0.891 32 H 0.089 0.911 33 H 0.057 0.943 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.234 0.766 40 H 0.208 0.792 41 H 0.099 0.901 42 H 0.113 0.887 43 H 0.111 0.889 44 H 0.206 0.794 45 H 0.070 0.930 46 H 0.105 0.895 47 H 0.224 0.776 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.204 -1.915 31.411 31.492 hybrid contribution -1.097 0.306 -1.536 1.912 sum -2.301 -1.609 29.874 30.006 Atomic orbital electron populations 1.22469 0.99102 1.02122 1.01705 1.22210 0.91758 0.90208 1.03639 1.61763 1.59185 1.01984 1.00435 1.22036 0.97411 0.98251 0.89827 1.21771 1.02314 0.99983 0.92484 1.21324 0.98145 0.97910 0.82726 1.45751 1.49309 1.36690 1.05795 1.17202 0.80179 0.82149 0.82258 1.90778 1.36756 1.28520 1.87059 1.20278 1.11589 1.05351 0.93701 1.24112 0.95549 0.95685 0.95183 1.77209 1.18772 1.12908 1.02871 1.48451 1.34096 1.24291 1.07541 1.22021 1.04948 1.04001 0.73529 1.22997 0.94333 0.95247 0.89790 1.21917 0.97912 0.98882 0.90289 1.19778 0.87392 0.86217 0.83518 1.90509 1.34342 1.37126 1.83986 1.41875 1.32972 1.40713 1.04913 1.19689 1.14449 1.23660 0.84910 0.87977 1.25238 0.97256 0.96746 0.98723 1.69613 1.30750 1.32047 1.22070 0.85878 0.80045 0.78258 0.80222 1.20494 1.20980 1.19445 0.92343 0.92315 0.92723 0.89143 0.91134 0.94265 0.90675 0.90129 0.91118 0.91523 0.91226 0.76566 0.79190 0.90102 0.88748 0.88908 0.79413 0.92971 0.89522 0.77574 0.91960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.50 9.26 37.15 0.34 -2.16 16 2 C 0.05 0.75 5.52 -3.82 -0.02 0.73 16 3 N -0.51 -8.08 4.31 -236.08 -1.02 -9.10 16 4 C 0.05 0.64 4.69 -3.83 -0.02 0.62 16 5 C -0.13 -1.24 5.25 -26.73 -0.14 -1.38 16 6 C 0.12 1.17 5.67 -4.04 -0.02 1.15 16 7 N -0.72 -6.39 5.55 -61.39 -0.34 -6.73 16 8 C 0.59 6.46 7.81 -12.52 -0.10 6.37 16 9 O -0.55 -7.93 16.90 5.27 0.09 -7.84 16 10 C -0.29 -2.65 6.13 -105.07 -0.64 -3.29 16 11 C 0.08 0.65 11.50 -16.98 -0.20 0.46 16 12 N -0.30 -2.69 12.50 30.86 0.39 -2.30 16 13 N -0.37 -2.55 3.98 -67.59 -0.27 -2.82 16 14 C 0.10 0.24 11.44 59.85 0.68 0.93 16 15 C 0.13 0.96 11.30 -16.56 -0.19 0.77 16 16 C 0.04 0.73 5.34 -4.98 -0.03 0.70 16 17 C 0.45 10.47 7.36 -10.99 -0.08 10.39 16 18 O -0.58 -15.50 14.70 5.54 0.08 -15.42 16 19 N -0.57 -14.39 5.29 -10.96 -0.06 -14.44 16 20 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16 21 H 0.10 2.99 7.16 -52.48 -0.38 2.61 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.66 13.05 55.50 0.72 -23.94 16 24 Si 0.93 21.14 29.55 -169.99 -5.02 16.12 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 28 H 0.06 0.82 6.29 -51.93 -0.33 0.49 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.62 6.26 -51.93 -0.33 0.29 16 31 H 0.09 1.70 6.54 -51.93 -0.34 1.36 16 32 H 0.07 0.93 6.51 -51.93 -0.34 0.59 16 33 H 0.04 0.44 5.98 -51.93 -0.31 0.13 16 34 H 0.07 0.87 7.86 -51.93 -0.41 0.46 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.66 6.57 -51.93 -0.34 0.32 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.40 2.54 7.43 -40.82 -0.30 2.24 16 40 H 0.19 0.90 7.50 -52.49 -0.39 0.51 16 41 H 0.08 0.12 8.14 -51.93 -0.42 -0.31 16 42 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 43 H 0.09 0.02 8.14 -51.93 -0.42 -0.40 16 44 H 0.19 0.98 8.06 -52.49 -0.42 0.56 16 45 H 0.05 0.85 5.97 -51.93 -0.31 0.54 16 46 H 0.09 1.39 7.81 -51.93 -0.41 0.99 16 47 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 48 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 396.74 15.07 5.98 5.98 Total: -1.00 -36.38 396.74 -7.11 -43.49 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -7.02 Total: 9.70 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: -0.65 Total: 7.30 kcal Atomic # 7 Polarization: -58.76 SS G_CDS: -0.57 Total: -59.33 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: 0.17 Total: -23.26 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.38 -7.11 -43.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752166693.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.352 kcal (2) G-P(sol) polarization free energy of solvation -36.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds