Wall clock time and date at job start Tue Mar 31 2020 20:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46904 * 109.46958 * 2 1 4 4 C 1.46897 * 111.00291 * 59.18424 * 3 2 1 5 5 C 1.52995 * 109.47155 * 66.04794 * 4 3 2 6 6 C 1.53002 * 109.47428 * 180.02562 * 5 4 3 7 7 N 1.46496 * 109.47394 * 179.97438 * 6 5 4 8 8 C 1.34780 * 119.99948 * 180.27395 * 7 6 5 9 9 O 1.21605 * 119.99689 * 359.72751 * 8 7 6 10 10 C 1.47426 * 119.99823 * 179.72621 * 8 7 6 11 11 C 1.41288 * 126.41875 * 359.68658 * 10 8 7 12 12 N 1.30448 * 108.02515 * 179.85930 * 11 10 8 13 13 N 1.39925 * 108.89479 * 0.40600 * 12 11 10 14 14 C 1.46507 * 125.75481 * 179.74152 * 13 12 11 15 15 C 1.34256 * 108.49373 * 359.74164 * 13 12 11 16 16 C 1.46900 * 110.99666 * 295.22835 * 3 2 1 17 17 C 1.50698 * 109.47248 * 288.23881 * 16 3 2 18 18 O 1.21296 * 120.00045 * 354.30505 * 17 16 3 19 19 N 1.34777 * 119.99882 * 174.29778 * 17 16 3 20 20 C 1.37095 * 119.99903 * 180.02562 * 19 17 16 21 21 H 1.08003 * 120.00491 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00097 * 180.02562 * 20 19 17 23 23 N 1.31414 * 120.00150 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00064 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47249 * 90.00183 * 24 22 20 26 26 H 1.48502 * 109.47003 * 209.99491 * 24 22 20 27 27 H 1.48496 * 109.47122 * 329.99654 * 24 22 20 28 28 H 1.08997 * 109.46980 * 60.00131 * 1 2 3 29 29 H 1.09007 * 109.46659 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47296 * 299.99242 * 1 2 3 31 31 H 1.08998 * 109.48056 * 239.99421 * 2 1 3 32 32 H 1.09006 * 109.47130 * 119.99265 * 2 1 3 33 33 H 1.08999 * 109.47004 * 306.04800 * 4 3 2 34 34 H 1.08995 * 109.47126 * 186.05098 * 4 3 2 35 35 H 1.09006 * 109.47343 * 59.99742 * 5 4 3 36 36 H 1.09003 * 109.47117 * 300.00017 * 5 4 3 37 37 H 1.08999 * 109.46959 * 59.99866 * 6 5 4 38 38 H 1.08995 * 109.46897 * 300.00332 * 6 5 4 39 39 H 0.97001 * 119.99795 * 0.02562 * 7 6 5 40 40 H 1.08001 * 125.98511 * 359.97438 * 11 10 8 41 41 H 1.09005 * 109.46695 * 270.00564 * 14 13 12 42 42 H 1.09001 * 109.46795 * 30.00006 * 14 13 12 43 43 H 1.08995 * 109.47667 * 149.99865 * 14 13 12 44 44 H 1.08002 * 126.29094 * 179.97438 * 15 13 12 45 45 H 1.09000 * 109.47250 * 48.24117 * 16 3 2 46 46 H 1.08993 * 109.47161 * 168.24056 * 16 3 2 47 47 H 0.96993 * 120.00320 * 0.02562 * 19 17 16 48 48 H 0.96998 * 120.00043 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5327 2.1156 1.1778 5 6 2.1475 1.5123 2.4422 6 6 1.6399 2.2728 3.6690 7 7 2.2281 1.6947 4.8798 8 6 1.9179 2.2034 6.0887 9 8 1.1537 3.1455 6.1740 10 6 2.5052 1.6178 7.3076 11 6 3.3980 0.5244 7.3666 12 7 3.6912 0.3098 8.6195 13 7 3.0028 1.2359 9.4110 14 6 3.0601 1.3231 10.8723 15 6 2.2809 2.0312 8.6054 16 6 1.6439 2.0761 -1.2406 17 6 2.4639 1.5368 -2.3842 18 8 3.3515 0.7382 -2.1704 19 7 2.2110 1.9418 -3.6446 20 6 2.9566 1.4508 -4.6850 21 1 3.7470 0.7398 -4.4946 22 6 2.6963 1.8687 -5.9843 23 7 1.7349 2.7342 -6.2160 24 14 3.7127 1.2002 -7.4018 25 1 3.0721 -0.0295 -7.9336 26 1 3.7937 2.2208 -8.4774 27 1 5.0803 0.8778 -6.9214 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3634 0.5137 0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 0.4467 2.0388 1.2296 34 1 1.8195 3.1642 1.0990 35 1 3.2336 1.5890 2.3904 36 1 1.8607 0.4636 2.5209 37 1 0.5539 2.1956 3.7206 38 1 1.9263 3.3215 3.5905 39 1 2.8380 0.9435 4.8117 40 1 3.7736 -0.0345 6.5222 41 1 2.2809 0.6951 11.3045 42 1 4.0356 0.9817 11.2186 43 1 2.9064 2.3570 11.1810 44 1 1.6418 2.8446 8.9158 45 1 0.5856 1.9106 -1.4426 46 1 1.8303 3.1445 -1.1321 47 1 1.5014 2.5806 -3.8156 48 1 1.5529 3.0256 -7.1231 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752166693.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:25 Heat of formation + Delta-G solvation = -17.688906 kcal Electronic energy + Delta-G solvation = -27846.137263 eV Core-core repulsion = 23743.897753 eV Total energy + Delta-G solvation = -4102.239510 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.33493 -40.52566 -40.14205 -38.61635 -36.24792 -35.79629 -34.40490 -33.24156 -32.73630 -31.37910 -31.18458 -28.78248 -27.84732 -26.43799 -25.64413 -24.02873 -23.09077 -21.91942 -21.58298 -20.90940 -20.48666 -19.73752 -18.89994 -17.72753 -17.28035 -17.04273 -16.82514 -16.66248 -16.47952 -16.43464 -16.09415 -15.66557 -15.52415 -15.16993 -14.94648 -14.69800 -14.49101 -14.30451 -13.88233 -13.61005 -13.53473 -13.44677 -13.40982 -13.10654 -12.98249 -12.89230 -12.68080 -12.64493 -12.38477 -12.14350 -12.11396 -12.08032 -11.90574 -11.48272 -11.29276 -10.93736 -10.59982 -10.25827 -10.13031 -9.96139 -9.62898 -9.05493 -8.43207 -5.91567 0.53792 1.15767 1.39521 1.42769 1.45015 1.55562 2.11574 2.26445 2.34049 2.48485 2.87459 3.23898 3.49377 3.53677 3.80976 3.99987 4.03534 4.12418 4.16907 4.20853 4.30497 4.33406 4.38132 4.42317 4.51479 4.57237 4.58947 4.62960 4.65867 4.70294 4.71717 4.75654 4.84564 5.05972 5.12366 5.25366 5.27560 5.38903 5.42948 5.44929 5.54215 5.86530 5.95000 6.15534 6.31393 6.48792 6.65437 6.66654 7.17400 7.32128 7.62005 8.18478 8.74297 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.031243 B = 0.001528 C = 0.001507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.974171 B =18314.939021 C =18569.345181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.052 3.948 3 N -0.530 5.530 4 C 0.053 3.947 5 C -0.114 4.114 6 C 0.130 3.870 7 N -0.715 5.715 8 C 0.594 3.406 9 O -0.594 6.594 10 C -0.319 4.319 11 C 0.085 3.915 12 N -0.329 5.329 13 N -0.363 5.363 14 C 0.085 3.915 15 C 0.131 3.869 16 C 0.053 3.947 17 C 0.444 3.556 18 O -0.614 6.614 19 N -0.578 5.578 20 C -0.331 4.331 21 H 0.078 0.922 22 C -0.013 4.013 23 N -0.922 5.922 24 Si 0.991 3.009 25 H -0.271 1.271 26 H -0.271 1.271 27 H -0.273 1.273 28 H 0.043 0.957 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.045 0.955 32 H 0.091 0.909 33 H 0.054 0.946 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.413 0.587 40 H 0.214 0.786 41 H 0.093 0.907 42 H 0.097 0.903 43 H 0.118 0.882 44 H 0.208 0.792 45 H 0.070 0.930 46 H 0.106 0.894 47 H 0.395 0.605 48 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.889 -1.389 31.766 31.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.076 4.076 3 N -0.253 5.253 4 C -0.074 4.074 5 C -0.152 4.152 6 C 0.006 3.994 7 N -0.366 5.366 8 C 0.383 3.617 9 O -0.476 6.476 10 C -0.334 4.334 11 C -0.102 4.102 12 N -0.149 5.149 13 N -0.141 5.141 14 C -0.054 4.054 15 C -0.022 4.022 16 C -0.078 4.078 17 C 0.231 3.769 18 O -0.500 6.500 19 N -0.216 5.216 20 C -0.461 4.461 21 H 0.096 0.904 22 C -0.213 4.213 23 N -0.563 5.563 24 Si 0.815 3.185 25 H -0.197 1.197 26 H -0.196 1.196 27 H -0.198 1.198 28 H 0.062 0.938 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.064 0.936 32 H 0.109 0.891 33 H 0.072 0.928 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.249 0.751 40 H 0.231 0.769 41 H 0.112 0.888 42 H 0.116 0.884 43 H 0.137 0.863 44 H 0.224 0.776 45 H 0.088 0.912 46 H 0.124 0.876 47 H 0.228 0.772 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.680 -1.915 32.809 32.908 hybrid contribution -0.933 0.285 -1.842 2.084 sum -2.613 -1.630 30.967 31.120 Atomic orbital electron populations 1.22381 0.97142 1.02994 1.01995 1.22125 0.93337 0.89734 1.02423 1.61703 1.60341 1.02513 1.00767 1.22121 0.98358 0.98167 0.88787 1.21617 1.01774 1.00292 0.91485 1.21182 0.98004 0.97446 0.82769 1.45657 1.49060 1.36736 1.05156 1.17461 0.79583 0.81584 0.83083 1.90749 1.38780 1.30433 1.87660 1.20271 1.12976 1.06534 0.93604 1.24487 0.94797 0.95265 0.95632 1.77160 1.20017 1.14220 1.03524 1.48797 1.33102 1.23338 1.08844 1.22397 1.05661 1.06094 0.71231 1.23359 0.93942 0.95299 0.89618 1.21769 0.97459 0.99590 0.88961 1.20845 0.86953 0.84892 0.84228 1.90477 1.36157 1.38641 1.84703 1.41952 1.33125 1.41172 1.05342 1.19650 1.15214 1.24683 0.86535 0.90395 1.26001 0.98120 0.96667 1.00480 1.69676 1.31376 1.32346 1.22934 0.84952 0.78235 0.78068 0.77227 1.19687 1.19625 1.19824 0.93751 0.91261 0.90530 0.93592 0.89118 0.92824 0.90223 0.90655 0.90208 0.91699 0.92043 0.75064 0.76920 0.88821 0.88435 0.86332 0.77565 0.91233 0.87608 0.77169 0.91421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.43 9.26 71.98 0.67 -3.76 16 2 C 0.05 1.51 5.52 86.30 0.48 1.99 16 3 N -0.53 -16.15 4.31 -900.83 -3.88 -20.03 16 4 C 0.05 1.15 4.69 86.30 0.41 1.56 16 5 C -0.11 -1.98 5.25 30.59 0.16 -1.82 16 6 C 0.13 2.26 5.67 86.38 0.49 2.75 16 7 N -0.72 -11.60 5.55 -466.38 -2.59 -14.19 16 8 C 0.59 12.43 7.81 86.66 0.68 13.11 16 9 O -0.59 -16.86 16.90 -4.05 -0.07 -16.93 16 10 C -0.32 -5.43 6.13 -20.15 -0.12 -5.55 16 11 C 0.09 1.24 11.50 85.65 0.99 2.23 16 12 N -0.33 -5.57 12.50 -56.27 -0.70 -6.27 16 13 N -0.36 -4.53 3.98 -367.76 -1.46 -5.99 16 14 C 0.09 0.27 11.44 127.77 1.46 1.73 16 15 C 0.13 1.80 11.30 84.28 0.95 2.75 16 16 C 0.05 1.84 5.34 85.56 0.46 2.30 16 17 C 0.44 21.24 7.36 87.66 0.65 21.88 16 18 O -0.61 -34.11 14.70 -3.08 -0.05 -34.16 16 19 N -0.58 -29.97 5.29 -306.98 -1.62 -31.60 16 20 C -0.33 -18.99 9.68 84.04 0.81 -18.18 16 21 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 22 C -0.01 -0.71 5.50 84.93 0.47 -0.25 16 23 N -0.92 -50.21 13.05 21.66 0.28 -49.93 16 24 Si 0.99 43.35 29.55 68.60 2.03 45.38 16 25 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 26 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 27 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 28 H 0.04 1.17 6.29 -2.39 -0.02 1.16 16 29 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 30 H 0.08 1.48 6.26 -2.39 -0.01 1.47 16 31 H 0.05 1.76 6.54 -2.39 -0.02 1.75 16 32 H 0.09 2.24 6.51 -2.38 -0.02 2.22 16 33 H 0.05 1.03 5.98 -2.39 -0.01 1.02 16 34 H 0.08 1.67 7.86 -2.39 -0.02 1.65 16 35 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 36 H 0.08 1.27 6.57 -2.39 -0.02 1.25 16 37 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.41 4.49 7.43 -92.71 -0.69 3.81 16 40 H 0.21 1.66 7.50 -2.91 -0.02 1.64 16 41 H 0.09 0.08 8.14 -2.38 -0.02 0.06 16 42 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 43 H 0.12 -0.24 8.14 -2.39 -0.02 -0.26 16 44 H 0.21 1.86 8.06 -2.91 -0.02 1.83 16 45 H 0.07 2.18 5.97 -2.39 -0.01 2.16 16 46 H 0.11 3.25 7.81 -2.39 -0.02 3.23 16 47 H 0.39 19.50 7.90 -92.71 -0.73 18.77 16 48 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -80.36 396.74 0.06 -80.30 By element: Atomic # 1 Polarization: 33.08 SS G_CDS: -0.42 Total: 32.67 kcal Atomic # 6 Polarization: 12.21 SS G_CDS: 8.53 Total: 20.75 kcal Atomic # 7 Polarization: -118.04 SS G_CDS: -9.98 Total: -128.01 kcal Atomic # 8 Polarization: -50.97 SS G_CDS: -0.11 Total: -51.08 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -80.36 0.06 -80.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752166693.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.615 kcal (2) G-P(sol) polarization free energy of solvation -80.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds