Wall clock time and date at job start Tue Mar 31 2020 20:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46896 * 109.47685 * 2 1 4 4 C 1.46900 * 111.00349 * 76.02306 * 3 2 1 5 5 C 1.53000 * 109.47348 * 199.55042 * 4 3 2 6 6 C 1.53001 * 109.46870 * 174.89488 * 5 4 3 7 7 N 1.46503 * 109.46599 * 180.02562 * 6 5 4 8 8 C 1.34778 * 119.99467 * 179.97438 * 7 6 5 9 9 O 1.21680 * 120.00365 * 0.02562 * 8 7 6 10 10 C 1.46764 * 119.99824 * 179.97438 * 8 7 6 11 11 C 1.36663 * 126.84476 * 180.02562 * 10 8 7 12 12 N 1.33317 * 107.78391 * 179.97438 * 11 10 8 13 13 C 1.30857 * 109.69114 * 359.97438 * 12 11 10 14 14 C 1.50694 * 125.42181 * 180.26732 * 13 12 11 15 15 N 1.34499 * 109.16072 * 0.02562 * 13 12 11 16 16 H 0.96995 * 126.47394 * 180.02562 * 15 13 12 17 17 C 1.46898 * 111.00126 * 199.98422 * 3 2 1 18 18 C 1.50696 * 109.47349 * 66.04285 * 17 3 2 19 19 O 1.21294 * 120.00277 * 359.97438 * 18 17 3 20 20 N 1.34780 * 119.99825 * 179.97438 * 18 17 3 21 21 C 1.37095 * 119.99801 * 180.02562 * 20 18 17 22 22 H 1.08007 * 120.00258 * 359.97438 * 21 20 18 23 23 C 1.38953 * 120.00095 * 180.02562 * 21 20 18 24 24 N 1.31410 * 119.99856 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 120.00169 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47193 * 89.99709 * 25 23 21 27 27 H 1.48498 * 109.46957 * 209.99567 * 25 23 21 28 28 H 1.48500 * 109.47022 * 329.99926 * 25 23 21 29 29 H 1.09000 * 109.46689 * 54.87087 * 1 2 3 30 30 H 1.08996 * 109.47632 * 174.87262 * 1 2 3 31 31 H 1.08999 * 109.47173 * 294.87476 * 1 2 3 32 32 H 1.09000 * 109.47289 * 239.99576 * 2 1 3 33 33 H 1.09000 * 109.47360 * 120.00025 * 2 1 3 34 34 H 1.09002 * 109.46851 * 79.55128 * 4 3 2 35 35 H 1.09000 * 109.46652 * 319.55319 * 4 3 2 36 36 H 1.08999 * 109.46858 * 54.89503 * 5 4 3 37 37 H 1.08999 * 109.46766 * 294.89481 * 5 4 3 38 38 H 1.08992 * 109.47071 * 60.00107 * 6 5 4 39 39 H 1.09002 * 109.46934 * 299.99464 * 6 5 4 40 40 H 0.96992 * 120.00161 * 359.97438 * 7 6 5 41 41 H 1.07999 * 126.10869 * 359.97438 * 11 10 8 42 42 H 1.08999 * 109.47299 * 269.69428 * 14 13 12 43 43 H 1.08998 * 109.47239 * 29.69565 * 14 13 12 44 44 H 1.09003 * 109.47271 * 149.69287 * 14 13 12 45 45 H 1.09008 * 109.46741 * 186.04195 * 17 3 2 46 46 H 1.08998 * 109.47184 * 306.04177 * 17 3 2 47 47 H 0.96996 * 120.00557 * 0.02562 * 20 18 17 48 48 H 0.97003 * 120.00184 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.8830 1.9917 1.3308 5 6 1.9280 3.5158 1.2035 6 6 1.6587 4.1498 2.5697 7 7 1.7012 5.6091 2.4476 8 6 1.4903 6.3823 3.5312 9 8 1.2651 5.8684 4.6109 10 6 1.5334 7.8442 3.4091 11 6 1.3418 8.7561 4.4088 12 7 1.4652 9.9732 3.8790 13 6 1.7245 9.8732 2.6002 14 6 1.9368 11.0307 1.6590 15 7 1.7766 8.5728 2.2607 16 1 1.9524 8.2143 1.3768 17 6 3.4104 1.4515 -0.4687 18 6 3.4712 1.0497 -1.9198 19 8 2.4561 0.7380 -2.5059 20 7 4.6537 1.0367 -2.5664 21 6 4.7090 0.6717 -3.8867 22 1 3.8050 0.3941 -4.4086 23 6 5.9281 0.6577 -4.5533 24 7 7.0281 0.9950 -3.9182 25 14 6.0036 0.1596 -6.3521 26 1 5.8323 1.3622 -7.2063 27 1 7.3193 -0.4669 -6.6374 28 1 4.9190 -0.8123 -6.6425 29 1 -0.3633 0.5914 -0.8405 30 1 -0.3634 -1.0235 -0.0918 31 1 -0.3633 0.4323 0.9323 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 2.7006 1.6562 1.9688 35 1 0.9320 1.6917 1.7709 36 1 1.1678 3.8437 0.4945 37 1 2.9121 3.8218 0.8485 38 1 2.4188 3.8218 3.2786 39 1 0.6746 3.8437 2.9245 40 1 1.8810 6.0187 1.5870 41 1 1.1286 8.5309 5.4433 42 1 0.9821 11.3238 1.2224 43 1 2.3591 11.8725 2.2077 44 1 2.6229 10.7331 0.8660 45 1 3.7827 2.4700 -0.3578 46 1 4.0258 0.7732 0.1222 47 1 5.4656 1.2856 -2.0977 48 1 7.8791 0.9856 -4.3836 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752171061.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:15 Heat of formation + Delta-G solvation = -19.150835 kcal Electronic energy + Delta-G solvation = -28118.771843 eV Core-core repulsion = 24016.468939 eV Total energy + Delta-G solvation = -4102.302904 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.62610 -39.67923 -38.83713 -37.04636 -35.51678 -33.91701 -33.27935 -32.47626 -31.82728 -31.32274 -30.28334 -28.11043 -27.01426 -25.22189 -24.09103 -23.00630 -21.94312 -21.31193 -20.93118 -20.54170 -19.20525 -18.92890 -17.90571 -16.60242 -16.37560 -16.30843 -16.01246 -15.70410 -15.12410 -14.94658 -14.66223 -14.38848 -14.28276 -14.26686 -14.02432 -13.77020 -13.71112 -13.44585 -13.15326 -12.93457 -12.75183 -12.25984 -12.16601 -11.97301 -11.76736 -11.53809 -11.37016 -11.27148 -11.14575 -10.84563 -10.67715 -10.61108 -10.48093 -10.43280 -10.31598 -10.25927 -9.52018 -9.50732 -8.87581 -8.45609 -8.02084 -7.93114 -6.46073 -3.86891 0.88917 2.37848 2.40632 2.73947 3.00423 3.13799 3.22836 3.28403 3.85428 3.89866 3.92929 4.18471 4.35106 4.55587 4.73547 4.83039 4.88101 4.93802 4.98036 5.10254 5.13106 5.20232 5.29379 5.36591 5.40066 5.41153 5.46479 5.53896 5.62146 5.79339 5.84095 5.85736 5.90321 5.98856 6.02689 6.14000 6.16605 6.24121 6.45468 6.54851 6.71520 7.02575 7.27217 7.37426 7.50147 7.50899 7.76390 8.02131 8.57450 9.13967 9.50244 10.02007 10.71670 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010778 B = 0.002061 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.336072 B =13579.824945 C =15543.690375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.051 3.949 3 N -0.515 5.515 4 C 0.058 3.942 5 C -0.129 4.129 6 C 0.121 3.879 7 N -0.727 5.727 8 C 0.595 3.405 9 O -0.525 6.525 10 C -0.093 4.093 11 C 0.074 3.926 12 N -0.497 5.497 13 C 0.241 3.759 14 C -0.076 4.076 15 N -0.552 5.552 16 H 0.422 0.578 17 C 0.044 3.956 18 C 0.443 3.557 19 O -0.576 6.576 20 N -0.565 5.565 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 H 0.066 0.934 30 H 0.052 0.948 31 H 0.043 0.957 32 H 0.095 0.905 33 H 0.022 0.978 34 H 0.036 0.964 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.396 0.604 41 H 0.185 0.815 42 H 0.087 0.913 43 H 0.096 0.904 44 H 0.079 0.921 45 H 0.086 0.914 46 H 0.047 0.953 47 H 0.391 0.609 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.079 13.892 12.626 20.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.076 4.076 3 N -0.240 5.240 4 C -0.071 4.071 5 C -0.167 4.167 6 C -0.002 4.002 7 N -0.378 5.378 8 C 0.382 3.618 9 O -0.401 6.401 10 C -0.208 4.208 11 C -0.080 4.080 12 N -0.217 5.217 13 C -0.023 4.023 14 C -0.134 4.134 15 N -0.158 5.158 16 H 0.261 0.739 17 C -0.088 4.088 18 C 0.228 3.772 19 O -0.460 6.460 20 N -0.202 5.202 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.756 3.244 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.113 0.887 33 H 0.040 0.960 34 H 0.054 0.946 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.229 0.771 41 H 0.202 0.798 42 H 0.106 0.894 43 H 0.115 0.885 44 H 0.098 0.902 45 H 0.104 0.896 46 H 0.065 0.935 47 H 0.224 0.776 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.103 14.241 13.063 21.362 hybrid contribution 1.520 -1.285 -1.367 2.415 sum -7.583 12.956 11.696 19.030 Atomic orbital electron populations 1.21681 0.95304 1.01050 1.01535 1.22153 0.95997 0.88194 1.01260 1.61573 1.19626 1.19406 1.23369 1.21998 1.01381 0.93388 0.90349 1.21798 1.03316 0.95909 0.95675 1.21405 1.02633 0.77898 0.98276 1.45906 1.73105 1.07797 1.11022 1.16828 0.76903 0.83757 0.84361 1.90865 1.49074 1.73481 1.26696 1.21160 1.18604 0.92829 0.88249 1.22689 0.99354 0.86536 0.99462 1.70228 1.20415 1.25248 1.05792 1.23526 1.00972 0.84611 0.93158 1.20342 1.03574 0.93245 0.96268 1.43273 1.54195 1.07348 1.10956 0.73894 1.21902 0.89310 1.01661 0.95898 1.19754 0.84537 0.84920 0.87977 1.90510 1.34104 1.53119 1.68233 1.41885 1.07458 1.59529 1.11356 1.19688 0.95117 1.41957 0.86021 0.87930 1.25260 0.94800 0.97510 1.00404 1.69609 0.98734 1.48511 1.37525 0.85868 0.77613 0.78838 0.82038 1.20413 1.20934 1.19425 0.91530 0.92908 0.93830 0.88664 0.95967 0.94571 0.90422 0.90095 0.91174 0.91086 0.90958 0.77061 0.79822 0.89427 0.88534 0.90185 0.89554 0.93534 0.77556 0.91876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.96 37.16 0.37 -1.50 16 2 C 0.05 0.80 5.18 -3.83 -0.02 0.78 16 3 N -0.52 -7.93 4.10 -236.08 -0.97 -8.89 16 4 C 0.06 0.66 4.81 -3.82 -0.02 0.64 16 5 C -0.13 -1.24 5.36 -26.73 -0.14 -1.39 16 6 C 0.12 1.11 5.67 -4.04 -0.02 1.08 16 7 N -0.73 -6.19 5.55 -61.59 -0.34 -6.53 16 8 C 0.60 6.47 7.79 -12.81 -0.10 6.37 16 9 O -0.53 -7.51 16.90 5.21 0.09 -7.42 16 10 C -0.09 -0.89 7.08 -82.14 -0.58 -1.48 16 11 C 0.07 0.77 11.66 -17.48 -0.20 0.57 16 12 N -0.50 -5.22 11.20 -10.58 -0.12 -5.34 16 13 C 0.24 1.84 8.12 -155.61 -1.26 0.58 16 14 C -0.08 -0.28 10.51 36.00 0.38 0.09 16 15 N -0.55 -3.72 6.07 -7.02 -0.04 -3.76 16 16 H 0.42 1.51 8.32 -40.82 -0.34 1.17 16 17 C 0.04 0.74 5.27 -4.98 -0.03 0.71 16 18 C 0.44 10.01 7.29 -10.99 -0.08 9.93 16 19 O -0.58 -14.89 14.12 5.54 0.08 -14.81 16 20 N -0.57 -13.87 5.29 -10.96 -0.06 -13.93 16 21 C -0.30 -8.10 9.68 -14.93 -0.14 -8.25 16 22 H 0.10 2.93 7.16 -52.48 -0.38 2.55 16 23 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.07 13.05 55.50 0.72 -23.35 16 25 Si 0.93 20.64 29.55 -169.99 -5.02 15.61 16 26 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 27 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 28 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.04 0.51 6.91 -51.93 -0.36 0.15 16 32 H 0.10 1.83 5.85 -51.93 -0.30 1.52 16 33 H 0.02 0.31 8.00 -51.93 -0.42 -0.11 16 34 H 0.04 0.39 8.00 -51.93 -0.42 -0.02 16 35 H 0.08 0.82 6.58 -51.93 -0.34 0.48 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.68 6.95 -51.93 -0.36 0.32 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.40 2.40 7.72 -40.82 -0.31 2.08 16 41 H 0.18 1.73 8.06 -52.49 -0.42 1.30 16 42 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 43 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 45 H 0.09 1.29 6.71 -51.92 -0.35 0.94 16 46 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 47 H 0.39 9.21 7.90 -40.82 -0.32 8.89 16 48 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 400.75 15.07 6.04 6.04 Total: -1.00 -34.65 400.75 -8.83 -43.48 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -7.26 Total: 10.29 kcal Atomic # 6 Polarization: 10.57 SS G_CDS: -1.95 Total: 8.62 kcal Atomic # 7 Polarization: -61.01 SS G_CDS: -0.81 Total: -61.81 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: 0.17 Total: -22.23 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.65 -8.83 -43.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752171061.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.327 kcal (2) G-P(sol) polarization free energy of solvation -34.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds