Wall clock time and date at job start Tue Mar 31 2020 20:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46896 * 109.47685 * 2 1 4 4 C 1.46900 * 111.00349 * 76.02306 * 3 2 1 5 5 C 1.53000 * 109.47348 * 199.55042 * 4 3 2 6 6 C 1.53001 * 109.46870 * 174.89488 * 5 4 3 7 7 N 1.46503 * 109.46599 * 180.02562 * 6 5 4 8 8 C 1.34778 * 119.99467 * 179.97438 * 7 6 5 9 9 O 1.21680 * 120.00365 * 0.02562 * 8 7 6 10 10 C 1.46764 * 119.99824 * 179.97438 * 8 7 6 11 11 C 1.36663 * 126.84476 * 180.02562 * 10 8 7 12 12 N 1.33317 * 107.78391 * 179.97438 * 11 10 8 13 13 C 1.30857 * 109.69114 * 359.97438 * 12 11 10 14 14 C 1.50694 * 125.42181 * 180.26732 * 13 12 11 15 15 N 1.34499 * 109.16072 * 0.02562 * 13 12 11 16 16 H 0.96995 * 126.47394 * 180.02562 * 15 13 12 17 17 C 1.46898 * 111.00126 * 199.98422 * 3 2 1 18 18 C 1.50696 * 109.47349 * 66.04285 * 17 3 2 19 19 O 1.21294 * 120.00277 * 359.97438 * 18 17 3 20 20 N 1.34780 * 119.99825 * 179.97438 * 18 17 3 21 21 C 1.37095 * 119.99801 * 180.02562 * 20 18 17 22 22 H 1.08007 * 120.00258 * 359.97438 * 21 20 18 23 23 C 1.38953 * 120.00095 * 180.02562 * 21 20 18 24 24 N 1.31410 * 119.99856 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 120.00169 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47193 * 89.99709 * 25 23 21 27 27 H 1.48498 * 109.46957 * 209.99567 * 25 23 21 28 28 H 1.48500 * 109.47022 * 329.99926 * 25 23 21 29 29 H 1.09000 * 109.46689 * 54.87087 * 1 2 3 30 30 H 1.08996 * 109.47632 * 174.87262 * 1 2 3 31 31 H 1.08999 * 109.47173 * 294.87476 * 1 2 3 32 32 H 1.09000 * 109.47289 * 239.99576 * 2 1 3 33 33 H 1.09000 * 109.47360 * 120.00025 * 2 1 3 34 34 H 1.09002 * 109.46851 * 79.55128 * 4 3 2 35 35 H 1.09000 * 109.46652 * 319.55319 * 4 3 2 36 36 H 1.08999 * 109.46858 * 54.89503 * 5 4 3 37 37 H 1.08999 * 109.46766 * 294.89481 * 5 4 3 38 38 H 1.08992 * 109.47071 * 60.00107 * 6 5 4 39 39 H 1.09002 * 109.46934 * 299.99464 * 6 5 4 40 40 H 0.96992 * 120.00161 * 359.97438 * 7 6 5 41 41 H 1.07999 * 126.10869 * 359.97438 * 11 10 8 42 42 H 1.08999 * 109.47299 * 269.69428 * 14 13 12 43 43 H 1.08998 * 109.47239 * 29.69565 * 14 13 12 44 44 H 1.09003 * 109.47271 * 149.69287 * 14 13 12 45 45 H 1.09008 * 109.46741 * 186.04195 * 17 3 2 46 46 H 1.08998 * 109.47184 * 306.04177 * 17 3 2 47 47 H 0.96996 * 120.00557 * 0.02562 * 20 18 17 48 48 H 0.97003 * 120.00184 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.8830 1.9917 1.3308 5 6 1.9280 3.5158 1.2035 6 6 1.6587 4.1498 2.5697 7 7 1.7012 5.6091 2.4476 8 6 1.4903 6.3823 3.5312 9 8 1.2651 5.8684 4.6109 10 6 1.5334 7.8442 3.4091 11 6 1.3418 8.7561 4.4088 12 7 1.4652 9.9732 3.8790 13 6 1.7245 9.8732 2.6002 14 6 1.9368 11.0307 1.6590 15 7 1.7766 8.5728 2.2607 16 1 1.9524 8.2143 1.3768 17 6 3.4104 1.4515 -0.4687 18 6 3.4712 1.0497 -1.9198 19 8 2.4561 0.7380 -2.5059 20 7 4.6537 1.0367 -2.5664 21 6 4.7090 0.6717 -3.8867 22 1 3.8050 0.3941 -4.4086 23 6 5.9281 0.6577 -4.5533 24 7 7.0281 0.9950 -3.9182 25 14 6.0036 0.1596 -6.3521 26 1 5.8323 1.3622 -7.2063 27 1 7.3193 -0.4669 -6.6374 28 1 4.9190 -0.8123 -6.6425 29 1 -0.3633 0.5914 -0.8405 30 1 -0.3634 -1.0235 -0.0918 31 1 -0.3633 0.4323 0.9323 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 2.7006 1.6562 1.9688 35 1 0.9320 1.6917 1.7709 36 1 1.1678 3.8437 0.4945 37 1 2.9121 3.8218 0.8485 38 1 2.4188 3.8218 3.2786 39 1 0.6746 3.8437 2.9245 40 1 1.8810 6.0187 1.5870 41 1 1.1286 8.5309 5.4433 42 1 0.9821 11.3238 1.2224 43 1 2.3591 11.8725 2.2077 44 1 2.6229 10.7331 0.8660 45 1 3.7827 2.4700 -0.3578 46 1 4.0258 0.7732 0.1222 47 1 5.4656 1.2856 -2.0977 48 1 7.8791 0.9856 -4.3836 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752171061.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:13 Heat of formation + Delta-G solvation = -46.080204 kcal Electronic energy + Delta-G solvation = -28119.939588 eV Core-core repulsion = 24016.468939 eV Total energy + Delta-G solvation = -4103.470649 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.28213 -40.59282 -40.35085 -38.41053 -36.46967 -35.82463 -33.99878 -33.30165 -33.13134 -32.55962 -31.50749 -28.91555 -28.13737 -26.59034 -25.49346 -23.81976 -22.80591 -22.17164 -21.88011 -21.36299 -20.84435 -19.85120 -19.63338 -17.95866 -17.14700 -17.08774 -17.05757 -16.76057 -16.40929 -16.21457 -16.11560 -15.59644 -15.47625 -15.28915 -15.06113 -14.97800 -14.71116 -14.27885 -14.10523 -13.68975 -13.50348 -13.41673 -13.29014 -13.23433 -13.02097 -12.87394 -12.77048 -12.42215 -12.40968 -12.29687 -12.12803 -11.87572 -11.63319 -11.54560 -11.39221 -11.27230 -11.12830 -10.31946 -10.22790 -9.97962 -9.55235 -9.18870 -8.45693 -5.93728 0.17571 1.37731 1.41701 1.53859 1.71764 1.76054 2.03869 2.08116 2.21840 2.28930 2.79545 3.21573 3.37497 3.40026 3.75768 3.89015 3.98374 4.07407 4.16430 4.25175 4.27602 4.30697 4.43047 4.51994 4.55419 4.56683 4.60842 4.69404 4.73237 4.75131 4.77285 4.83232 4.95242 5.11840 5.12416 5.16614 5.23860 5.33376 5.41428 5.42034 5.45242 5.92722 6.12287 6.20827 6.27107 6.35209 6.62526 6.84767 6.98648 7.14915 7.59057 8.15080 8.71726 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010778 B = 0.002061 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.336072 B =13579.824945 C =15543.690375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.051 3.949 3 N -0.530 5.530 4 C 0.058 3.942 5 C -0.117 4.117 6 C 0.128 3.872 7 N -0.714 5.714 8 C 0.597 3.403 9 O -0.566 6.566 10 C -0.102 4.102 11 C 0.056 3.944 12 N -0.531 5.531 13 C 0.248 3.752 14 C -0.075 4.075 15 N -0.538 5.538 16 H 0.438 0.562 17 C 0.056 3.944 18 C 0.442 3.558 19 O -0.612 6.612 20 N -0.577 5.577 21 C -0.329 4.329 22 H 0.078 0.922 23 C -0.014 4.014 24 N -0.922 5.922 25 Si 0.990 3.010 26 H -0.271 1.271 27 H -0.272 1.272 28 H -0.274 1.274 29 H 0.043 0.957 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.052 0.948 33 H 0.041 0.959 34 H 0.049 0.951 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.409 0.591 41 H 0.183 0.817 42 H 0.102 0.898 43 H 0.097 0.903 44 H 0.104 0.896 45 H 0.111 0.889 46 H 0.063 0.937 47 H 0.395 0.605 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.789 14.796 12.388 20.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.077 4.077 3 N -0.255 5.255 4 C -0.070 4.070 5 C -0.155 4.155 6 C 0.004 3.996 7 N -0.366 5.366 8 C 0.384 3.616 9 O -0.445 6.445 10 C -0.218 4.218 11 C -0.098 4.098 12 N -0.252 5.252 13 C -0.016 4.016 14 C -0.133 4.133 15 N -0.145 5.145 16 H 0.280 0.720 17 C -0.075 4.075 18 C 0.229 3.771 19 O -0.497 6.497 20 N -0.215 5.215 21 C -0.458 4.458 22 H 0.096 0.904 23 C -0.213 4.213 24 N -0.563 5.563 25 Si 0.814 3.186 26 H -0.196 1.196 27 H -0.197 1.197 28 H -0.199 1.199 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.108 0.892 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.245 0.755 41 H 0.200 0.800 42 H 0.120 0.880 43 H 0.116 0.884 44 H 0.122 0.878 45 H 0.129 0.871 46 H 0.080 0.920 47 H 0.229 0.771 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.798 15.151 12.794 21.695 hybrid contribution 1.381 -1.535 -1.273 2.425 sum -7.417 13.616 11.521 19.317 Atomic orbital electron populations 1.21615 0.93855 1.01544 1.01802 1.22083 0.97226 0.88356 1.00009 1.61557 1.18487 1.19457 1.26001 1.22093 1.02542 0.94071 0.88328 1.21655 1.03372 0.94744 0.95708 1.21299 1.02477 0.77988 0.97808 1.45776 1.72032 1.07584 1.11159 1.16940 0.76320 0.84231 0.84132 1.90841 1.51149 1.74250 1.28248 1.20925 1.19484 0.92264 0.89125 1.22832 0.99891 0.87131 0.99962 1.70222 1.22060 1.25412 1.07485 1.24258 0.98792 0.85655 0.92900 1.20549 1.04973 0.91730 0.96046 1.43178 1.53456 1.06878 1.11006 0.72008 1.21775 0.90936 1.03151 0.91653 1.20801 0.83267 0.82879 0.90129 1.90488 1.35258 1.54133 1.69855 1.41954 1.08311 1.60344 1.10850 1.19624 0.94798 1.43846 0.87570 0.90375 1.25996 0.94157 0.97038 1.04133 1.69668 0.99075 1.48638 1.38904 0.84968 0.77722 0.78561 0.77351 1.19598 1.19730 1.19882 0.93800 0.91919 0.91352 0.92945 0.94045 0.93321 0.89216 0.90482 0.90829 0.91278 0.91179 0.75466 0.80039 0.87991 0.88397 0.87776 0.87114 0.91951 0.77126 0.91398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.38 9.96 71.98 0.72 -2.67 16 2 C 0.05 1.54 5.18 86.30 0.45 1.99 16 3 N -0.53 -15.43 4.10 -900.81 -3.70 -19.13 16 4 C 0.06 1.15 4.81 86.30 0.41 1.57 16 5 C -0.12 -1.94 5.36 30.59 0.16 -1.78 16 6 C 0.13 2.06 5.67 86.38 0.49 2.55 16 7 N -0.71 -10.88 5.55 -467.00 -2.59 -13.47 16 8 C 0.60 12.51 7.79 86.47 0.67 13.18 16 9 O -0.57 -16.18 16.90 -4.29 -0.07 -16.26 16 10 C -0.10 -1.89 7.08 40.01 0.28 -1.61 16 11 C 0.06 1.19 11.66 84.10 0.98 2.17 16 12 N -0.53 -10.94 11.20 -187.40 -2.10 -13.04 16 13 C 0.25 3.39 8.12 138.19 1.12 4.52 16 14 C -0.07 -0.37 10.51 71.23 0.75 0.38 16 15 N -0.54 -6.29 6.07 -176.11 -1.07 -7.36 16 16 H 0.44 2.01 8.32 -92.71 -0.77 1.24 16 17 C 0.06 1.80 5.27 85.56 0.45 2.25 16 18 C 0.44 20.13 7.29 87.66 0.64 20.77 16 19 O -0.61 -32.47 14.12 -3.07 -0.04 -32.51 16 20 N -0.58 -28.67 5.29 -306.98 -1.62 -30.29 16 21 C -0.33 -18.23 9.68 84.04 0.81 -17.41 16 22 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 23 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 24 N -0.92 -48.80 13.05 21.66 0.28 -48.52 16 25 Si 0.99 42.15 29.55 68.60 2.03 44.18 16 26 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 27 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 28 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 29 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.07 1.42 6.91 -2.39 -0.02 1.40 16 32 H 0.05 2.05 5.85 -2.39 -0.01 2.03 16 33 H 0.04 1.08 8.00 -2.39 -0.02 1.06 16 34 H 0.05 0.89 8.00 -2.39 -0.02 0.87 16 35 H 0.09 1.62 6.58 -2.39 -0.02 1.60 16 36 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.07 1.20 6.95 -2.39 -0.02 1.19 16 38 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.41 3.98 7.72 -92.71 -0.72 3.26 16 41 H 0.18 3.65 8.06 -2.91 -0.02 3.63 16 42 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 43 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 44 H 0.10 0.03 8.14 -2.39 -0.02 0.02 16 45 H 0.11 3.04 6.71 -2.38 -0.02 3.02 16 46 H 0.06 1.84 8.12 -2.39 -0.02 1.82 16 47 H 0.40 18.67 7.90 -92.71 -0.73 17.94 16 48 H 0.28 13.74 8.31 -92.71 -0.77 12.97 16 Total: -1.00 -77.00 400.75 -1.68 -78.68 By element: Atomic # 1 Polarization: 33.27 SS G_CDS: -1.20 Total: 32.06 kcal Atomic # 6 Polarization: 17.26 SS G_CDS: 8.41 Total: 25.67 kcal Atomic # 7 Polarization: -121.02 SS G_CDS: -10.80 Total: -131.82 kcal Atomic # 8 Polarization: -48.65 SS G_CDS: -0.12 Total: -48.77 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -77.00 -1.68 -78.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752171061.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.598 kcal (2) G-P(sol) polarization free energy of solvation -77.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds