Wall clock time and date at job start Tue Mar 31 2020 20:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46904 * 109.47040 * 2 1 4 4 C 1.46894 * 111.00178 * 76.02533 * 3 2 1 5 5 C 1.52995 * 109.47360 * 199.55104 * 4 3 2 6 6 C 1.53001 * 109.47400 * 174.89559 * 5 4 3 7 7 N 1.46501 * 109.47321 * 179.97438 * 6 5 4 8 8 C 1.34770 * 120.00197 * 179.97438 * 7 6 5 9 9 O 1.21618 * 120.00238 * 0.02562 * 8 7 6 10 10 C 1.47327 * 119.99960 * 180.27578 * 8 7 6 11 11 C 1.36423 * 126.23289 * 179.73197 * 10 8 7 12 12 N 1.35383 * 106.86918 * 179.97438 * 11 10 8 13 13 C 1.46493 * 126.13561 * 180.02562 * 12 11 10 14 14 C 1.35849 * 107.73146 * 359.97438 * 12 11 10 15 15 N 1.30176 * 109.00196 * 359.75061 * 14 12 11 16 16 C 1.46897 * 110.99915 * 199.98382 * 3 2 1 17 17 C 1.50697 * 109.47387 * 66.04178 * 16 3 2 18 18 O 1.21288 * 119.99855 * 0.02562 * 17 16 3 19 19 N 1.34773 * 120.00115 * 179.97438 * 17 16 3 20 20 C 1.37093 * 120.00242 * 180.02562 * 19 17 16 21 21 H 1.07998 * 119.99944 * 0.02562 * 20 19 17 22 22 C 1.38957 * 120.00060 * 180.02562 * 20 19 17 23 23 N 1.31409 * 120.00133 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99838 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47197 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47261 * 119.99693 * 24 22 20 27 27 H 1.48505 * 109.46806 * 239.99457 * 24 22 20 28 28 H 1.08998 * 109.47111 * 294.87367 * 1 2 3 29 29 H 1.08997 * 109.47287 * 54.87414 * 1 2 3 30 30 H 1.09002 * 109.46819 * 174.87434 * 1 2 3 31 31 H 1.09001 * 109.47199 * 239.99674 * 2 1 3 32 32 H 1.08996 * 109.46792 * 119.99538 * 2 1 3 33 33 H 1.08999 * 109.47575 * 79.54667 * 4 3 2 34 34 H 1.09001 * 109.47313 * 319.55123 * 4 3 2 35 35 H 1.08997 * 109.47706 * 54.88941 * 5 4 3 36 36 H 1.09004 * 109.46787 * 294.89171 * 5 4 3 37 37 H 1.08998 * 109.47538 * 59.99764 * 6 5 4 38 38 H 1.09004 * 109.46834 * 299.99584 * 6 5 4 39 39 H 0.97003 * 119.99751 * 359.97438 * 7 6 5 40 40 H 1.07992 * 126.56554 * 359.95111 * 11 10 8 41 41 H 1.09000 * 109.47459 * 89.99668 * 13 12 11 42 42 H 1.08999 * 109.47011 * 209.99639 * 13 12 11 43 43 H 1.09004 * 109.47479 * 329.99693 * 13 12 11 44 44 H 1.08000 * 125.50344 * 179.97438 * 14 12 11 45 45 H 1.09002 * 109.46918 * 186.04570 * 16 3 2 46 46 H 1.09002 * 109.47060 * 306.03893 * 16 3 2 47 47 H 0.97010 * 120.00029 * 0.02562 * 19 17 16 48 48 H 0.97001 * 120.00181 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8830 1.9918 1.3308 5 6 1.9277 3.5158 1.2035 6 6 1.6584 4.1498 2.5697 7 7 1.7019 5.6091 2.4480 8 6 1.4912 6.3823 3.5315 9 8 1.2654 5.8687 4.6105 10 6 1.5289 7.8499 3.4078 11 6 1.3296 8.7493 4.4140 12 7 1.4526 9.9824 3.8688 13 6 1.3184 11.2575 4.5774 14 6 1.7239 9.8252 2.5470 15 7 1.7751 8.5536 2.2732 16 6 3.4103 1.4517 -0.4687 17 6 3.4712 1.0499 -1.9198 18 8 2.4560 0.7390 -2.5061 19 7 4.6536 1.0370 -2.5664 20 6 4.7090 0.6719 -3.8867 21 1 3.8050 0.3950 -4.4087 22 6 5.9282 0.6581 -4.5532 23 7 7.0281 0.9954 -3.9182 24 14 6.0034 0.1613 -6.3524 25 1 4.6376 -0.1698 -6.8321 26 1 6.5511 1.2852 -7.1538 27 1 6.8816 -1.0269 -6.5014 28 1 -0.3633 0.4322 0.9323 29 1 -0.3634 0.5913 -0.8405 30 1 -0.3633 -1.0236 -0.0918 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.7005 1.6563 1.9689 34 1 0.9320 1.6917 1.7709 35 1 1.1676 3.8438 0.4945 36 1 2.9118 3.8219 0.8486 37 1 2.4186 3.8220 3.2787 38 1 0.6743 3.8437 2.9246 39 1 1.8823 6.0188 1.5874 40 1 1.1145 8.5213 5.4475 41 1 2.2917 11.5648 4.9600 42 1 0.9415 12.0163 3.8916 43 1 0.6221 11.1403 5.4078 44 1 1.8765 10.6258 1.8385 45 1 3.7826 2.4702 -0.3577 46 1 4.0258 0.7735 0.1223 47 1 5.4656 1.2860 -2.0976 48 1 7.8792 0.9854 -4.3833 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752172988.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:01 Heat of formation + Delta-G solvation = -8.401609 kcal Electronic energy + Delta-G solvation = -27996.420206 eV Core-core repulsion = 23894.583424 eV Total energy + Delta-G solvation = -4101.836783 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.52719 -39.40970 -38.70727 -36.89726 -35.19240 -34.56692 -33.79718 -31.89326 -31.22948 -30.32051 -30.00930 -27.93862 -26.89852 -25.13551 -24.01399 -23.02652 -21.72417 -21.44136 -20.80565 -20.07856 -19.06868 -18.21787 -17.80500 -16.41047 -16.36340 -16.32983 -15.90045 -15.63194 -15.02745 -14.85302 -14.58868 -14.52462 -14.19017 -14.18086 -13.93314 -13.78451 -13.59514 -13.39238 -13.33004 -13.19098 -12.59424 -12.12630 -12.01815 -11.78751 -11.59894 -11.44365 -11.22885 -11.11931 -11.06647 -10.67722 -10.53623 -10.35380 -10.30594 -10.20156 -10.17699 -10.14855 -9.42677 -9.20426 -8.90087 -8.33880 -7.91820 -7.80549 -6.37165 -3.77575 1.27810 2.09334 2.18250 3.15773 3.19403 3.29629 3.37016 3.39369 3.96494 4.04722 4.09013 4.13286 4.28905 4.36757 4.49001 4.76486 4.80671 4.94074 5.04432 5.06722 5.17054 5.30207 5.31376 5.45316 5.55590 5.59836 5.64698 5.69559 5.76211 5.90936 5.97811 6.00919 6.04472 6.10313 6.18717 6.28649 6.35937 6.41982 6.56089 6.57439 6.65545 7.29620 7.40546 7.51261 7.59842 7.60047 8.11950 8.16876 8.67329 9.23322 9.60352 10.12422 10.80790 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012039 B = 0.001941 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2325.206083 B =14419.707716 C =16199.478665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.052 3.948 3 N -0.515 5.515 4 C 0.058 3.942 5 C -0.128 4.128 6 C 0.122 3.878 7 N -0.713 5.713 8 C 0.603 3.397 9 O -0.550 6.550 10 C -0.063 4.063 11 C 0.032 3.968 12 N -0.462 5.462 13 C 0.070 3.930 14 C 0.186 3.814 15 N -0.462 5.462 16 C 0.043 3.957 17 C 0.445 3.555 18 O -0.576 6.576 19 N -0.567 5.567 20 C -0.296 4.296 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.928 3.072 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 H 0.043 0.957 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.094 0.906 32 H 0.021 0.979 33 H 0.035 0.965 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.411 0.589 40 H 0.188 0.812 41 H 0.081 0.919 42 H 0.092 0.908 43 H 0.089 0.911 44 H 0.213 0.787 45 H 0.088 0.912 46 H 0.046 0.954 47 H 0.391 0.609 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.478 18.759 18.987 28.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.076 4.076 3 N -0.240 5.240 4 C -0.070 4.070 5 C -0.167 4.167 6 C -0.002 4.002 7 N -0.364 5.364 8 C 0.389 3.611 9 O -0.428 6.428 10 C -0.192 4.192 11 C -0.107 4.107 12 N -0.144 5.144 13 C -0.073 4.073 14 C -0.098 4.098 15 N -0.180 5.180 16 C -0.088 4.088 17 C 0.230 3.770 18 O -0.459 6.459 19 N -0.204 5.204 20 C -0.426 4.426 21 H 0.121 0.879 22 C -0.181 4.181 23 N -0.544 5.544 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 H 0.062 0.938 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.113 0.887 32 H 0.039 0.961 33 H 0.053 0.947 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.246 0.754 40 H 0.205 0.795 41 H 0.100 0.900 42 H 0.111 0.889 43 H 0.108 0.892 44 H 0.229 0.771 45 H 0.106 0.894 46 H 0.064 0.936 47 H 0.225 0.775 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.273 18.179 18.228 27.717 hybrid contribution 1.225 0.256 0.305 1.288 sum -9.047 18.435 18.533 27.661 Atomic orbital electron populations 1.21684 0.95368 1.00935 1.01584 1.22147 0.95968 0.88317 1.01145 1.61565 1.19627 1.19225 1.23533 1.22003 1.01202 0.93662 0.90167 1.21785 1.03517 0.95475 0.95891 1.21352 1.02148 0.78696 0.98024 1.45797 1.71650 1.06944 1.12004 1.16873 0.76257 0.84050 0.83917 1.90789 1.50457 1.74347 1.27218 1.20599 1.13727 0.94176 0.90689 1.22605 1.04495 0.83205 1.00399 1.45373 1.51950 1.07172 1.09917 1.22160 1.03937 0.82786 0.98371 1.25243 1.04830 0.95853 0.83852 1.70633 1.17800 1.02661 1.26943 1.21904 0.89324 1.01785 0.95773 1.19771 0.84504 0.84716 0.88018 1.90504 1.34098 1.53071 1.68257 1.41888 1.07490 1.59640 1.11344 1.19741 0.95108 1.41690 0.86053 0.87889 1.25254 0.94835 0.97628 1.00350 1.69621 0.98675 1.48695 1.37435 0.85814 0.78482 0.78013 0.82112 1.19244 1.20798 1.20848 0.93817 0.91505 0.93009 0.88740 0.96059 0.94691 0.90536 0.90020 0.91103 0.91485 0.91339 0.75371 0.79490 0.90001 0.88919 0.89233 0.77081 0.89380 0.93600 0.77544 0.92001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.96 37.16 0.37 -1.64 16 2 C 0.05 0.86 5.18 -3.82 -0.02 0.84 16 3 N -0.52 -8.63 4.10 -236.08 -0.97 -9.60 16 4 C 0.06 0.76 4.81 -3.83 -0.02 0.74 16 5 C -0.13 -1.53 5.36 -26.73 -0.14 -1.68 16 6 C 0.12 1.40 5.67 -4.04 -0.02 1.37 16 7 N -0.71 -8.59 5.55 -61.41 -0.34 -8.93 16 8 C 0.60 8.06 7.81 -12.57 -0.10 7.96 16 9 O -0.55 -8.65 16.88 5.26 0.09 -8.57 16 10 C -0.06 -0.72 6.98 -83.09 -0.58 -1.30 16 11 C 0.03 0.27 11.26 -16.64 -0.19 0.09 16 12 N -0.46 -2.73 3.13 -125.78 -0.39 -3.12 16 13 C 0.07 0.08 11.15 59.84 0.67 0.75 16 14 C 0.19 1.33 12.55 -89.90 -1.13 0.20 16 15 N -0.46 -5.04 11.01 -11.03 -0.12 -5.16 16 16 C 0.04 0.79 5.27 -4.98 -0.03 0.76 16 17 C 0.44 10.57 7.29 -10.99 -0.08 10.49 16 18 O -0.58 -15.51 14.12 5.55 0.08 -15.43 16 19 N -0.57 -14.50 5.29 -10.97 -0.06 -14.56 16 20 C -0.30 -8.32 9.68 -14.93 -0.14 -8.47 16 21 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 22 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 23 N -0.90 -24.83 13.05 55.50 0.72 -24.10 16 24 Si 0.93 21.28 29.55 -169.99 -5.02 16.25 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 H 0.04 0.55 6.91 -51.93 -0.36 0.19 16 29 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.09 1.90 5.85 -51.93 -0.30 1.60 16 32 H 0.02 0.32 7.99 -51.93 -0.42 -0.10 16 33 H 0.03 0.43 8.00 -51.93 -0.42 0.01 16 34 H 0.08 0.92 6.58 -51.93 -0.34 0.58 16 35 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.07 0.87 6.95 -51.93 -0.36 0.51 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.41 4.67 8.19 -40.82 -0.33 4.34 16 40 H 0.19 1.25 8.06 -52.49 -0.42 0.83 16 41 H 0.08 0.03 8.14 -51.93 -0.42 -0.39 16 42 H 0.09 -0.05 8.14 -51.93 -0.42 -0.48 16 43 H 0.09 0.02 8.14 -51.93 -0.42 -0.41 16 44 H 0.21 0.67 8.06 -52.49 -0.42 0.25 16 45 H 0.09 1.46 6.71 -51.93 -0.35 1.11 16 46 H 0.05 0.78 8.12 -51.93 -0.42 0.35 16 47 H 0.39 9.63 7.90 -40.82 -0.32 9.30 16 48 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 402.40 15.07 6.06 6.06 Total: -1.00 -36.11 402.40 -8.82 -44.93 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: -7.36 Total: 11.65 kcal Atomic # 6 Polarization: 12.09 SS G_CDS: -1.51 Total: 10.58 kcal Atomic # 7 Polarization: -64.32 SS G_CDS: -1.16 Total: -65.48 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: 0.17 Total: -24.00 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -36.11 -8.82 -44.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752172988.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.528 kcal (2) G-P(sol) polarization free energy of solvation -36.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds