Wall clock time and date at job start Tue Mar 31 2020 20:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46904 * 109.47040 * 2 1 4 4 C 1.46894 * 111.00178 * 76.02533 * 3 2 1 5 5 C 1.52995 * 109.47360 * 199.55104 * 4 3 2 6 6 C 1.53001 * 109.47400 * 174.89559 * 5 4 3 7 7 N 1.46501 * 109.47321 * 179.97438 * 6 5 4 8 8 C 1.34770 * 120.00197 * 179.97438 * 7 6 5 9 9 O 1.21618 * 120.00238 * 0.02562 * 8 7 6 10 10 C 1.47327 * 119.99960 * 180.27578 * 8 7 6 11 11 C 1.36423 * 126.23289 * 179.73197 * 10 8 7 12 12 N 1.35383 * 106.86918 * 179.97438 * 11 10 8 13 13 C 1.46493 * 126.13561 * 180.02562 * 12 11 10 14 14 C 1.35849 * 107.73146 * 359.97438 * 12 11 10 15 15 N 1.30176 * 109.00196 * 359.75061 * 14 12 11 16 16 C 1.46897 * 110.99915 * 199.98382 * 3 2 1 17 17 C 1.50697 * 109.47387 * 66.04178 * 16 3 2 18 18 O 1.21288 * 119.99855 * 0.02562 * 17 16 3 19 19 N 1.34773 * 120.00115 * 179.97438 * 17 16 3 20 20 C 1.37093 * 120.00242 * 180.02562 * 19 17 16 21 21 H 1.07998 * 119.99944 * 0.02562 * 20 19 17 22 22 C 1.38957 * 120.00060 * 180.02562 * 20 19 17 23 23 N 1.31409 * 120.00133 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99838 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47197 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47261 * 119.99693 * 24 22 20 27 27 H 1.48505 * 109.46806 * 239.99457 * 24 22 20 28 28 H 1.08998 * 109.47111 * 294.87367 * 1 2 3 29 29 H 1.08997 * 109.47287 * 54.87414 * 1 2 3 30 30 H 1.09002 * 109.46819 * 174.87434 * 1 2 3 31 31 H 1.09001 * 109.47199 * 239.99674 * 2 1 3 32 32 H 1.08996 * 109.46792 * 119.99538 * 2 1 3 33 33 H 1.08999 * 109.47575 * 79.54667 * 4 3 2 34 34 H 1.09001 * 109.47313 * 319.55123 * 4 3 2 35 35 H 1.08997 * 109.47706 * 54.88941 * 5 4 3 36 36 H 1.09004 * 109.46787 * 294.89171 * 5 4 3 37 37 H 1.08998 * 109.47538 * 59.99764 * 6 5 4 38 38 H 1.09004 * 109.46834 * 299.99584 * 6 5 4 39 39 H 0.97003 * 119.99751 * 359.97438 * 7 6 5 40 40 H 1.07992 * 126.56554 * 359.95111 * 11 10 8 41 41 H 1.09000 * 109.47459 * 89.99668 * 13 12 11 42 42 H 1.08999 * 109.47011 * 209.99639 * 13 12 11 43 43 H 1.09004 * 109.47479 * 329.99693 * 13 12 11 44 44 H 1.08000 * 125.50344 * 179.97438 * 14 12 11 45 45 H 1.09002 * 109.46918 * 186.04570 * 16 3 2 46 46 H 1.09002 * 109.47060 * 306.03893 * 16 3 2 47 47 H 0.97010 * 120.00029 * 0.02562 * 19 17 16 48 48 H 0.97001 * 120.00181 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8830 1.9918 1.3308 5 6 1.9277 3.5158 1.2035 6 6 1.6584 4.1498 2.5697 7 7 1.7019 5.6091 2.4480 8 6 1.4912 6.3823 3.5315 9 8 1.2654 5.8687 4.6105 10 6 1.5289 7.8499 3.4078 11 6 1.3296 8.7493 4.4140 12 7 1.4526 9.9824 3.8688 13 6 1.3184 11.2575 4.5774 14 6 1.7239 9.8252 2.5470 15 7 1.7751 8.5536 2.2732 16 6 3.4103 1.4517 -0.4687 17 6 3.4712 1.0499 -1.9198 18 8 2.4560 0.7390 -2.5061 19 7 4.6536 1.0370 -2.5664 20 6 4.7090 0.6719 -3.8867 21 1 3.8050 0.3950 -4.4087 22 6 5.9282 0.6581 -4.5532 23 7 7.0281 0.9954 -3.9182 24 14 6.0034 0.1613 -6.3524 25 1 4.6376 -0.1698 -6.8321 26 1 6.5511 1.2852 -7.1538 27 1 6.8816 -1.0269 -6.5014 28 1 -0.3633 0.4322 0.9323 29 1 -0.3634 0.5913 -0.8405 30 1 -0.3633 -1.0236 -0.0918 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.7005 1.6563 1.9689 34 1 0.9320 1.6917 1.7709 35 1 1.1676 3.8438 0.4945 36 1 2.9118 3.8219 0.8486 37 1 2.4186 3.8220 3.2787 38 1 0.6743 3.8437 2.9246 39 1 1.8823 6.0188 1.5874 40 1 1.1145 8.5213 5.4475 41 1 2.2917 11.5648 4.9600 42 1 0.9415 12.0163 3.8916 43 1 0.6221 11.1403 5.4078 44 1 1.8765 10.6258 1.8385 45 1 3.7826 2.4702 -0.3577 46 1 4.0258 0.7735 0.1223 47 1 5.4656 1.2860 -2.0976 48 1 7.8792 0.9854 -4.3833 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752172988.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:00 Heat of formation + Delta-G solvation = -35.099172 kcal Electronic energy + Delta-G solvation = -27997.577899 eV Core-core repulsion = 23894.583424 eV Total energy + Delta-G solvation = -4102.994476 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.10829 -40.52464 -40.26339 -38.38434 -36.31178 -35.79152 -35.04960 -33.29073 -32.92497 -31.55517 -30.78261 -28.72916 -27.93039 -26.56323 -25.49630 -23.90789 -22.67122 -22.11270 -22.03724 -21.06773 -20.75617 -19.83232 -18.86360 -17.93347 -17.16106 -17.03418 -16.90791 -16.78168 -16.41180 -16.19067 -16.14208 -15.57681 -15.43143 -15.27163 -15.09560 -14.87668 -14.75093 -14.44690 -14.09474 -13.70809 -13.62641 -13.43153 -13.40447 -13.25795 -12.98855 -12.85246 -12.74690 -12.39457 -12.38246 -12.26724 -12.10592 -11.84817 -11.52919 -11.42124 -11.38100 -11.07658 -10.71923 -10.22231 -10.14194 -9.96763 -9.59552 -9.16359 -8.44450 -5.92634 0.56800 1.37343 1.42066 1.44917 1.56447 1.75420 2.08983 2.27210 2.32261 2.53533 2.82926 3.22561 3.40629 3.45448 3.87720 3.93115 4.00987 4.05135 4.19045 4.21106 4.29424 4.32031 4.44522 4.47600 4.51607 4.54289 4.57781 4.62172 4.71317 4.75263 4.77882 4.78275 4.97525 5.06944 5.15079 5.22653 5.30300 5.42717 5.43149 5.43455 5.46693 5.94282 6.11062 6.14684 6.29453 6.48593 6.63638 6.86599 7.15906 7.22491 7.59900 8.15995 8.73349 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012039 B = 0.001941 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2325.206083 B =14419.707716 C =16199.478665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.051 3.949 3 N -0.532 5.532 4 C 0.061 3.939 5 C -0.116 4.116 6 C 0.129 3.871 7 N -0.712 5.712 8 C 0.598 3.402 9 O -0.584 6.584 10 C -0.104 4.104 11 C 0.040 3.960 12 N -0.454 5.454 13 C 0.062 3.938 14 C 0.193 3.807 15 N -0.502 5.502 16 C 0.056 3.944 17 C 0.442 3.558 18 O -0.611 6.611 19 N -0.577 5.577 20 C -0.329 4.329 21 H 0.079 0.921 22 C -0.015 4.015 23 N -0.922 5.922 24 Si 0.992 3.008 25 H -0.274 1.274 26 H -0.271 1.271 27 H -0.271 1.271 28 H 0.067 0.933 29 H 0.042 0.958 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.043 0.957 33 H 0.050 0.950 34 H 0.091 0.909 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.413 0.587 40 H 0.202 0.798 41 H 0.094 0.906 42 H 0.116 0.884 43 H 0.101 0.899 44 H 0.249 0.751 45 H 0.107 0.893 46 H 0.064 0.936 47 H 0.395 0.605 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.424 20.538 20.093 30.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.076 4.076 3 N -0.257 5.257 4 C -0.067 4.067 5 C -0.155 4.155 6 C 0.005 3.995 7 N -0.361 5.361 8 C 0.386 3.614 9 O -0.465 6.465 10 C -0.232 4.232 11 C -0.102 4.102 12 N -0.134 5.134 13 C -0.078 4.078 14 C -0.092 4.092 15 N -0.221 5.221 16 C -0.075 4.075 17 C 0.230 3.770 18 O -0.497 6.497 19 N -0.215 5.215 20 C -0.459 4.459 21 H 0.097 0.903 22 C -0.215 4.215 23 N -0.563 5.563 24 Si 0.816 3.184 25 H -0.198 1.198 26 H -0.196 1.196 27 H -0.197 1.197 28 H 0.086 0.914 29 H 0.061 0.939 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.109 0.891 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.249 0.751 40 H 0.218 0.782 41 H 0.113 0.887 42 H 0.134 0.866 43 H 0.120 0.880 44 H 0.265 0.735 45 H 0.125 0.875 46 H 0.082 0.918 47 H 0.229 0.771 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.209 19.991 19.351 29.637 hybrid contribution 1.168 -0.194 0.014 1.184 sum -9.041 19.797 19.366 29.133 Atomic orbital electron populations 1.21622 0.93862 1.01573 1.01777 1.22088 0.97235 0.88214 1.00066 1.61542 1.18542 1.19576 1.26040 1.22070 1.02577 0.93728 0.88334 1.21642 1.03017 0.94957 0.95848 1.21266 1.02150 0.78526 0.97552 1.45813 1.71242 1.07123 1.11971 1.17229 0.75551 0.85142 0.83528 1.90747 1.52288 1.75196 1.28226 1.20528 1.16895 0.93586 0.92198 1.22836 1.02994 0.83858 1.00479 1.45646 1.50267 1.07809 1.09691 1.22543 1.05225 0.80977 0.99082 1.25973 1.02776 0.95579 0.84852 1.70551 1.19627 1.04424 1.27467 1.21768 0.90971 1.03008 0.91782 1.20776 0.83305 0.82847 0.90100 1.90479 1.35219 1.54148 1.69827 1.41956 1.08277 1.60344 1.10891 1.19683 0.94857 1.43795 0.87540 0.90348 1.26033 0.94121 0.97032 1.04278 1.69683 0.99076 1.48636 1.38935 0.84877 0.78194 0.78186 0.77105 1.19828 1.19644 1.19659 0.91381 0.93913 0.91730 0.92876 0.93911 0.93201 0.89065 0.90981 0.91343 0.91446 0.91305 0.75110 0.78161 0.88743 0.86573 0.88028 0.73471 0.87505 0.91776 0.77149 0.91400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.69 9.96 71.98 0.72 -2.97 16 2 C 0.05 1.69 5.18 86.30 0.45 2.13 16 3 N -0.53 -17.39 4.10 -900.81 -3.69 -21.08 16 4 C 0.06 1.46 4.81 86.30 0.41 1.88 16 5 C -0.12 -2.66 5.36 30.59 0.16 -2.50 16 6 C 0.13 2.88 5.67 86.38 0.49 3.37 16 7 N -0.71 -17.29 5.55 -466.47 -2.59 -19.88 16 8 C 0.60 16.28 7.81 86.64 0.68 16.96 16 9 O -0.58 -18.70 16.88 -4.09 -0.07 -18.76 16 10 C -0.10 -2.40 6.98 40.50 0.28 -2.12 16 11 C 0.04 0.64 11.26 83.72 0.94 1.59 16 12 N -0.45 -4.36 3.13 -551.86 -1.73 -6.09 16 13 C 0.06 -0.05 11.15 127.77 1.42 1.37 16 14 C 0.19 2.39 12.55 180.10 2.26 4.65 16 15 N -0.50 -10.70 11.01 -188.81 -2.08 -12.78 16 16 C 0.06 2.00 5.27 85.56 0.45 2.45 16 17 C 0.44 21.49 7.29 87.66 0.64 22.13 16 18 O -0.61 -34.14 14.12 -3.05 -0.04 -34.19 16 19 N -0.58 -30.24 5.29 -307.00 -1.62 -31.86 16 20 C -0.33 -19.01 9.68 84.04 0.81 -18.19 16 21 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 22 C -0.02 -0.83 5.50 84.93 0.47 -0.37 16 23 N -0.92 -50.60 13.05 21.66 0.28 -50.32 16 24 Si 0.99 43.73 29.55 68.60 2.03 45.75 16 25 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 26 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 27 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 28 H 0.07 1.57 6.91 -2.39 -0.02 1.55 16 29 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.05 2.19 5.85 -2.39 -0.01 2.17 16 32 H 0.04 1.20 7.99 -2.39 -0.02 1.18 16 33 H 0.05 1.09 8.00 -2.39 -0.02 1.07 16 34 H 0.09 1.96 6.58 -2.39 -0.02 1.94 16 35 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.07 1.61 6.95 -2.39 -0.02 1.59 16 37 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.41 9.57 8.19 -92.71 -0.76 8.81 16 40 H 0.20 2.49 8.06 -2.91 -0.02 2.46 16 41 H 0.09 -0.24 8.14 -2.39 -0.02 -0.26 16 42 H 0.12 -0.59 8.14 -2.39 -0.02 -0.61 16 43 H 0.10 -0.27 8.14 -2.38 -0.02 -0.29 16 44 H 0.25 0.81 8.06 -2.91 -0.02 0.79 16 45 H 0.11 3.42 6.71 -2.39 -0.02 3.41 16 46 H 0.06 2.08 8.12 -2.39 -0.02 2.06 16 47 H 0.39 19.74 7.90 -92.70 -0.73 19.01 16 48 H 0.28 14.17 8.31 -92.71 -0.77 13.40 16 Total: -1.00 -81.03 402.40 0.18 -80.85 By element: Atomic # 1 Polarization: 38.47 SS G_CDS: -0.50 Total: 37.97 kcal Atomic # 6 Polarization: 20.19 SS G_CDS: 10.19 Total: 30.38 kcal Atomic # 7 Polarization: -130.57 SS G_CDS: -11.43 Total: -142.00 kcal Atomic # 8 Polarization: -52.84 SS G_CDS: -0.11 Total: -52.95 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Total: -81.03 0.18 -80.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752172988.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.749 kcal (2) G-P(sol) polarization free energy of solvation -81.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds