Wall clock time and date at job start Tue Mar 31 2020 20:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34936 * 126.54454 * 2 1 4 4 O 1.35209 * 125.49455 * 359.97438 * 3 2 1 5 5 N 1.31538 * 109.01500 * 179.97438 * 3 2 1 6 6 C 1.33224 * 109.76238 * 0.02562 * 5 3 2 7 7 C 1.36718 * 107.96103 * 359.97438 * 6 5 3 8 8 C 1.46382 * 126.82280 * 180.26742 * 7 6 5 9 9 O 1.21739 * 119.99590 * 174.68098 * 8 7 6 10 10 N 1.34768 * 120.00100 * 354.67337 * 8 7 6 11 11 C 1.46498 * 119.99936 * 184.78695 * 10 8 7 12 12 C 1.53006 * 109.47123 * 180.02562 * 11 10 8 13 13 C 1.52995 * 109.47194 * 179.97438 * 12 11 10 14 14 N 1.46902 * 109.47332 * 179.97438 * 13 12 11 15 15 C 1.46901 * 111.00246 * 294.30541 * 14 13 12 16 16 C 1.53235 * 109.33985 * 172.74131 * 15 14 13 17 17 N 1.47079 * 108.51988 * 53.83314 * 16 15 14 18 18 C 1.36942 * 120.88430 * 128.83333 * 17 16 15 19 19 H 1.07996 * 120.00007 * 210.55510 * 18 17 16 20 20 C 1.38814 * 119.99431 * 30.55331 * 18 17 16 21 21 N 1.31620 * 120.00297 * 10.22240 * 20 18 17 22 22 Si 1.86798 * 119.99483 * 190.21939 * 20 18 17 23 23 H 1.48502 * 109.47335 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46854 * 120.00526 * 22 20 18 25 25 H 1.48501 * 109.47462 * 239.99984 * 22 20 18 26 26 C 1.47087 * 118.23873 * 308.81167 * 17 16 15 27 27 C 1.46895 * 111.00118 * 169.99927 * 14 13 12 28 28 H 1.09001 * 109.46928 * 274.14106 * 1 2 3 29 29 H 1.08997 * 109.47104 * 34.14070 * 1 2 3 30 30 H 1.09004 * 109.47219 * 154.14432 * 1 2 3 31 31 H 0.96698 * 113.99901 * 89.99648 * 4 3 2 32 32 H 1.07998 * 126.01983 * 180.02562 * 6 5 3 33 33 H 0.97000 * 120.00243 * 4.78763 * 10 8 7 34 34 H 1.09004 * 109.46875 * 299.99688 * 11 10 8 35 35 H 1.08993 * 109.47367 * 60.00428 * 11 10 8 36 36 H 1.09000 * 109.47203 * 300.00015 * 12 11 10 37 37 H 1.09007 * 109.47060 * 59.99879 * 12 11 10 38 38 H 1.09000 * 109.47278 * 300.00239 * 13 12 11 39 39 H 1.09007 * 109.46996 * 60.00110 * 13 12 11 40 40 H 1.09000 * 109.49166 * 292.70460 * 15 14 13 41 41 H 1.09001 * 109.48847 * 52.78276 * 15 14 13 42 42 H 1.08996 * 109.63005 * 294.12245 * 16 15 14 43 43 H 1.09003 * 109.62526 * 173.53888 * 16 15 14 44 44 H 0.96999 * 120.00135 * 179.97438 * 21 20 18 45 45 H 1.08997 * 109.62496 * 291.47700 * 26 17 16 46 46 H 1.08997 * 109.79097 * 170.99173 * 26 17 16 47 47 H 1.08997 * 109.49884 * 307.21664 * 27 14 13 48 48 H 1.09007 * 109.49299 * 67.29854 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2685 1.0841 0.0000 4 8 1.8515 2.3703 -0.0005 5 7 3.5228 0.6879 0.0006 6 6 3.5747 -0.6433 0.0004 7 6 2.2916 -1.1153 0.0002 8 6 1.8726 -2.5179 0.0055 9 8 0.6924 -2.8002 0.1025 10 7 2.7935 -3.4966 -0.0972 11 6 2.3681 -4.8948 -0.1976 12 6 3.6000 -5.7964 -0.3017 13 6 3.1558 -7.2568 -0.4059 14 7 4.3385 -8.1223 -0.5065 15 6 5.0634 -7.8796 -1.7610 16 6 6.3796 -8.6641 -1.7464 17 7 6.0789 -10.0761 -1.4651 18 6 6.5675 -11.0722 -2.2678 19 1 6.0076 -11.9869 -2.3946 20 6 7.7825 -10.9061 -2.9182 21 7 8.5592 -9.8885 -2.6123 22 14 8.3152 -12.1270 -4.2278 23 1 7.2717 -13.1719 -4.3844 24 1 8.5025 -11.4177 -5.5189 25 1 9.5949 -12.7617 -3.8217 26 6 5.2397 -10.3899 -0.2986 27 6 3.9684 -9.5373 -0.3701 28 1 -0.3633 0.0742 1.0250 29 1 -0.3633 0.8505 -0.5767 30 1 -0.3634 -0.9248 -0.4482 31 1 1.7299 2.7446 0.8827 32 1 4.4723 -1.2439 0.0011 33 1 3.7378 -3.2752 -0.1046 34 1 1.7948 -5.1648 0.6893 35 1 1.7477 -5.0231 -1.0844 36 1 4.1738 -5.5266 -1.1883 37 1 4.2202 -5.6681 0.5854 38 1 2.5822 -7.5263 0.4809 39 1 2.5354 -7.3854 -1.2929 40 1 4.4536 -8.2078 -2.6027 41 1 5.2756 -6.8149 -1.8582 42 1 7.0338 -8.2674 -0.9700 43 1 6.8668 -8.5800 -2.7179 44 1 9.4083 -9.7726 -3.0665 45 1 5.7844 -10.1590 0.6169 46 1 4.9731 -11.4467 -0.3094 47 1 3.3865 -9.6750 0.5412 48 1 3.3739 -9.8425 -1.2313 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752350625.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:45 Heat of formation + Delta-G solvation = 24.346602 kcal Electronic energy + Delta-G solvation = -28474.941324 eV Core-core repulsion = 24374.524610 eV Total energy + Delta-G solvation = -4100.416714 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.69546 -39.73254 -38.27487 -37.81785 -35.97660 -34.70124 -34.24119 -32.23373 -30.85100 -29.92389 -29.48879 -27.56391 -26.83732 -24.80051 -23.37234 -22.84514 -22.38144 -21.93611 -21.21715 -20.32294 -19.10699 -19.09068 -17.89791 -16.96747 -16.83134 -16.50171 -16.08297 -15.69002 -15.21496 -15.02895 -14.72320 -14.53544 -14.35896 -14.06050 -13.91157 -13.71189 -13.40822 -13.23886 -13.19342 -13.03279 -12.94497 -12.67915 -12.17438 -11.86611 -11.59621 -11.33150 -11.00835 -10.91173 -10.76653 -10.75709 -10.39864 -10.30597 -10.27273 -10.23867 -10.02860 -9.76243 -9.59101 -9.46069 -8.92275 -8.51980 -7.83426 -6.60091 -5.77813 -3.24603 0.72491 1.69914 2.15883 2.87858 2.92448 3.30753 3.36304 3.43909 3.45861 4.18640 4.28068 4.30414 4.49238 4.55253 4.69470 4.84179 4.88281 5.00829 5.08259 5.13894 5.40296 5.42967 5.46005 5.49567 5.57857 5.68898 5.87915 5.89234 5.94706 5.96466 5.99505 6.10026 6.16045 6.19410 6.25254 6.35939 6.55868 6.70948 6.94508 6.97099 7.08666 7.26542 7.31719 7.60531 7.66394 7.72626 7.78169 7.82178 8.46830 9.22911 9.84210 10.44457 11.30654 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022424 B = 0.001752 C = 0.001663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.363835 B =15977.547634 C =16828.987564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.428 5.428 3 C 0.396 3.604 4 O -0.439 6.439 5 N -0.486 5.486 6 C 0.058 3.942 7 C -0.080 4.080 8 C 0.596 3.404 9 O -0.546 6.546 10 N -0.712 5.712 11 C 0.124 3.876 12 C -0.129 4.129 13 C 0.059 3.941 14 N -0.533 5.533 15 C 0.032 3.968 16 C 0.179 3.821 17 N -0.596 5.596 18 C -0.251 4.251 19 H 0.064 0.936 20 C 0.003 3.997 21 N -0.905 5.905 22 Si 0.904 3.096 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.289 1.289 26 C 0.148 3.852 27 C 0.045 3.955 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.108 0.892 31 H 0.406 0.594 32 H 0.188 0.812 33 H 0.406 0.594 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.028 0.972 40 H 0.023 0.977 41 H 0.062 0.938 42 H 0.026 0.974 43 H 0.088 0.912 44 H 0.253 0.747 45 H 0.025 0.975 46 H 0.055 0.945 47 H 0.061 0.939 48 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.763 20.666 7.750 27.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.121 5.121 3 C 0.097 3.903 4 O -0.240 6.240 5 N -0.214 5.214 6 C -0.098 4.098 7 C -0.196 4.196 8 C 0.382 3.618 9 O -0.425 6.425 10 N -0.363 5.363 11 C 0.001 3.999 12 C -0.168 4.168 13 C -0.070 4.070 14 N -0.258 5.258 15 C -0.097 4.097 16 C 0.053 3.947 17 N -0.319 5.319 18 C -0.381 4.381 19 H 0.082 0.918 20 C -0.196 4.196 21 N -0.550 5.550 22 Si 0.734 3.266 23 H -0.203 1.203 24 H -0.216 1.216 25 H -0.216 1.216 26 C 0.022 3.978 27 C -0.084 4.084 28 H 0.100 0.900 29 H 0.107 0.893 30 H 0.126 0.874 31 H 0.263 0.737 32 H 0.205 0.795 33 H 0.241 0.759 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.047 0.953 40 H 0.042 0.958 41 H 0.080 0.920 42 H 0.044 0.956 43 H 0.106 0.894 44 H 0.064 0.936 45 H 0.043 0.957 46 H 0.073 0.927 47 H 0.079 0.921 48 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -15.685 21.172 7.501 27.396 hybrid contribution -0.580 -0.900 -0.863 1.375 sum -16.265 20.272 6.638 26.825 Atomic orbital electron populations 1.22315 0.75049 1.06151 1.04235 1.45650 1.08511 1.05557 1.52373 1.20248 0.84465 0.81447 1.04142 1.84816 1.86971 1.17873 1.34376 1.70335 1.16403 1.12812 1.21851 1.22616 0.95524 0.90291 1.01320 1.20580 0.91157 0.88348 1.19500 1.16579 0.85622 0.82960 0.76630 1.90815 1.17006 1.83985 1.50710 1.45628 1.09777 1.06608 1.74310 1.21414 0.97586 0.78433 1.02493 1.21817 0.96697 0.94352 1.03890 1.21930 0.92716 0.92030 1.00356 1.61946 1.21809 1.05138 1.36881 1.22979 0.98471 0.99768 0.88499 1.20864 0.90066 0.82307 1.01470 1.44077 1.58507 1.02249 1.27087 1.19226 1.00051 0.97577 1.21271 0.91802 1.25162 0.95411 0.98135 1.00871 1.69976 1.11197 1.30883 1.42924 0.86193 0.78296 0.80713 0.81391 1.20311 1.21614 1.21619 1.20983 0.90004 0.95860 0.90992 1.22611 0.98839 0.88026 0.98973 0.89983 0.89256 0.87369 0.73685 0.79488 0.75922 0.90990 0.91281 0.90771 0.90128 0.91170 0.95334 0.95836 0.91960 0.95584 0.89396 0.93640 0.95683 0.92676 0.92062 0.95501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.41 10.70 59.85 0.64 1.05 16 2 N -0.43 -3.82 3.20 -122.12 -0.39 -4.22 16 3 C 0.40 3.66 9.01 -89.60 -0.81 2.86 16 4 O -0.44 -2.88 13.53 -17.32 -0.23 -3.12 16 5 N -0.49 -5.21 11.22 -14.62 -0.16 -5.37 16 6 C 0.06 0.51 11.35 -17.50 -0.20 0.32 16 7 C -0.08 -0.77 6.92 -81.97 -0.57 -1.34 16 8 C 0.60 6.24 7.77 -12.99 -0.10 6.14 16 9 O -0.55 -7.18 14.88 5.15 0.08 -7.10 16 10 N -0.71 -6.08 5.54 -61.71 -0.34 -6.42 16 11 C 0.12 1.16 5.68 -4.04 -0.02 1.13 16 12 C -0.13 -1.32 5.26 -26.73 -0.14 -1.46 16 13 C 0.06 0.75 4.96 -3.83 -0.02 0.73 16 14 N -0.53 -8.96 4.63 -234.32 -1.08 -10.04 16 15 C 0.03 0.60 5.46 -3.70 -0.02 0.58 16 16 C 0.18 4.24 5.36 -3.61 -0.02 4.23 16 17 N -0.60 -15.00 3.03 -172.01 -0.52 -15.52 16 18 C -0.25 -6.90 9.63 -15.06 -0.14 -7.04 16 19 H 0.06 1.73 7.85 -52.49 -0.41 1.31 16 20 C 0.00 0.07 5.07 -17.43 -0.09 -0.01 16 21 N -0.91 -26.08 11.03 55.49 0.61 -25.47 16 22 Si 0.90 21.60 29.57 -169.99 -5.03 16.57 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 C 0.15 3.13 6.69 -3.60 -0.02 3.10 16 27 C 0.04 0.79 5.62 -3.70 -0.02 0.77 16 28 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.11 0.86 6.41 -51.93 -0.33 0.53 16 31 H 0.41 0.49 9.06 45.56 0.41 0.90 16 32 H 0.19 1.06 7.45 -52.49 -0.39 0.67 16 33 H 0.41 2.53 7.40 -40.82 -0.30 2.23 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.79 6.40 -51.93 -0.33 0.45 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.82 7.97 -51.93 -0.41 0.40 16 39 H 0.03 0.37 8.12 -51.93 -0.42 -0.05 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 1.02 6.16 -51.93 -0.32 0.70 16 42 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.09 2.32 6.21 -51.93 -0.32 2.00 16 44 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 45 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.05 1.12 7.96 -51.93 -0.41 0.70 16 47 H 0.06 0.91 7.99 -51.93 -0.41 0.50 16 48 H 0.03 0.49 8.14 -51.92 -0.42 0.07 16 LS Contribution 387.99 15.07 5.85 5.85 Total: -1.00 -35.18 387.99 -9.36 -44.55 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -6.60 Total: -0.75 kcal Atomic # 6 Polarization: 12.57 SS G_CDS: -1.53 Total: 11.04 kcal Atomic # 7 Polarization: -65.15 SS G_CDS: -1.89 Total: -67.04 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: -0.16 Total: -10.22 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.18 -9.36 -44.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752350625.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.894 kcal (2) G-P(sol) polarization free energy of solvation -35.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds