Wall clock time and date at job start Tue Mar 31 2020 20:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34936 * 126.54454 * 2 1 4 4 O 1.35209 * 125.49455 * 359.97438 * 3 2 1 5 5 N 1.31538 * 109.01500 * 179.97438 * 3 2 1 6 6 C 1.33224 * 109.76238 * 0.02562 * 5 3 2 7 7 C 1.36718 * 107.96103 * 359.97438 * 6 5 3 8 8 C 1.46382 * 126.82280 * 180.26742 * 7 6 5 9 9 O 1.21739 * 119.99590 * 174.68098 * 8 7 6 10 10 N 1.34768 * 120.00100 * 354.67337 * 8 7 6 11 11 C 1.46498 * 119.99936 * 184.78695 * 10 8 7 12 12 C 1.53006 * 109.47123 * 180.02562 * 11 10 8 13 13 C 1.52995 * 109.47194 * 179.97438 * 12 11 10 14 14 N 1.46902 * 109.47332 * 179.97438 * 13 12 11 15 15 C 1.46901 * 111.00246 * 294.30541 * 14 13 12 16 16 C 1.53235 * 109.33985 * 172.74131 * 15 14 13 17 17 N 1.47079 * 108.51988 * 53.83314 * 16 15 14 18 18 C 1.36942 * 120.88430 * 128.83333 * 17 16 15 19 19 H 1.07996 * 120.00007 * 210.55510 * 18 17 16 20 20 C 1.38814 * 119.99431 * 30.55331 * 18 17 16 21 21 N 1.31620 * 120.00297 * 10.22240 * 20 18 17 22 22 Si 1.86798 * 119.99483 * 190.21939 * 20 18 17 23 23 H 1.48502 * 109.47335 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46854 * 120.00526 * 22 20 18 25 25 H 1.48501 * 109.47462 * 239.99984 * 22 20 18 26 26 C 1.47087 * 118.23873 * 308.81167 * 17 16 15 27 27 C 1.46895 * 111.00118 * 169.99927 * 14 13 12 28 28 H 1.09001 * 109.46928 * 274.14106 * 1 2 3 29 29 H 1.08997 * 109.47104 * 34.14070 * 1 2 3 30 30 H 1.09004 * 109.47219 * 154.14432 * 1 2 3 31 31 H 0.96698 * 113.99901 * 89.99648 * 4 3 2 32 32 H 1.07998 * 126.01983 * 180.02562 * 6 5 3 33 33 H 0.97000 * 120.00243 * 4.78763 * 10 8 7 34 34 H 1.09004 * 109.46875 * 299.99688 * 11 10 8 35 35 H 1.08993 * 109.47367 * 60.00428 * 11 10 8 36 36 H 1.09000 * 109.47203 * 300.00015 * 12 11 10 37 37 H 1.09007 * 109.47060 * 59.99879 * 12 11 10 38 38 H 1.09000 * 109.47278 * 300.00239 * 13 12 11 39 39 H 1.09007 * 109.46996 * 60.00110 * 13 12 11 40 40 H 1.09000 * 109.49166 * 292.70460 * 15 14 13 41 41 H 1.09001 * 109.48847 * 52.78276 * 15 14 13 42 42 H 1.08996 * 109.63005 * 294.12245 * 16 15 14 43 43 H 1.09003 * 109.62526 * 173.53888 * 16 15 14 44 44 H 0.96999 * 120.00135 * 179.97438 * 21 20 18 45 45 H 1.08997 * 109.62496 * 291.47700 * 26 17 16 46 46 H 1.08997 * 109.79097 * 170.99173 * 26 17 16 47 47 H 1.08997 * 109.49884 * 307.21664 * 27 14 13 48 48 H 1.09007 * 109.49299 * 67.29854 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2685 1.0841 0.0000 4 8 1.8515 2.3703 -0.0005 5 7 3.5228 0.6879 0.0006 6 6 3.5747 -0.6433 0.0004 7 6 2.2916 -1.1153 0.0002 8 6 1.8726 -2.5179 0.0055 9 8 0.6924 -2.8002 0.1025 10 7 2.7935 -3.4966 -0.0972 11 6 2.3681 -4.8948 -0.1976 12 6 3.6000 -5.7964 -0.3017 13 6 3.1558 -7.2568 -0.4059 14 7 4.3385 -8.1223 -0.5065 15 6 5.0634 -7.8796 -1.7610 16 6 6.3796 -8.6641 -1.7464 17 7 6.0789 -10.0761 -1.4651 18 6 6.5675 -11.0722 -2.2678 19 1 6.0076 -11.9869 -2.3946 20 6 7.7825 -10.9061 -2.9182 21 7 8.5592 -9.8885 -2.6123 22 14 8.3152 -12.1270 -4.2278 23 1 7.2717 -13.1719 -4.3844 24 1 8.5025 -11.4177 -5.5189 25 1 9.5949 -12.7617 -3.8217 26 6 5.2397 -10.3899 -0.2986 27 6 3.9684 -9.5373 -0.3701 28 1 -0.3633 0.0742 1.0250 29 1 -0.3633 0.8505 -0.5767 30 1 -0.3634 -0.9248 -0.4482 31 1 1.7299 2.7446 0.8827 32 1 4.4723 -1.2439 0.0011 33 1 3.7378 -3.2752 -0.1046 34 1 1.7948 -5.1648 0.6893 35 1 1.7477 -5.0231 -1.0844 36 1 4.1738 -5.5266 -1.1883 37 1 4.2202 -5.6681 0.5854 38 1 2.5822 -7.5263 0.4809 39 1 2.5354 -7.3854 -1.2929 40 1 4.4536 -8.2078 -2.6027 41 1 5.2756 -6.8149 -1.8582 42 1 7.0338 -8.2674 -0.9700 43 1 6.8668 -8.5800 -2.7179 44 1 9.4083 -9.7726 -3.0665 45 1 5.7844 -10.1590 0.6169 46 1 4.9731 -11.4467 -0.3094 47 1 3.3865 -9.6750 0.5412 48 1 3.3739 -9.8425 -1.2313 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752350625.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:44 Heat of formation + Delta-G solvation = -5.267493 kcal Electronic energy + Delta-G solvation = -28476.225488 eV Core-core repulsion = 24374.524610 eV Total energy + Delta-G solvation = -4101.700877 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.34253 -40.52576 -39.70689 -38.35913 -37.06448 -35.94198 -35.08209 -33.69051 -32.24009 -31.59538 -30.36455 -28.37111 -28.09256 -26.08664 -24.66490 -24.22801 -23.61028 -22.62677 -22.18411 -21.14539 -20.77415 -19.67779 -18.72491 -18.54665 -17.59187 -17.35706 -17.05157 -16.72382 -16.47861 -16.09660 -15.88384 -15.53014 -15.36432 -15.29050 -15.15509 -15.04107 -14.80507 -14.51490 -14.40585 -13.77651 -13.70829 -13.35032 -13.29531 -13.20924 -12.89233 -12.77010 -12.66451 -12.50700 -12.26572 -12.02707 -11.91453 -11.76296 -11.50056 -11.45314 -11.25677 -11.03628 -10.92250 -10.59279 -10.22723 -9.57816 -9.21518 -8.59716 -7.85780 -5.36100 0.06241 1.09448 1.46380 1.47644 1.49880 1.58153 2.17068 2.19830 2.50733 2.79311 3.04714 3.30782 3.55006 3.72663 3.77571 3.91312 3.99995 4.09494 4.20843 4.25673 4.31104 4.38483 4.42477 4.52862 4.60037 4.66139 4.68901 4.71388 4.73824 4.84045 4.92218 4.94717 5.08280 5.18865 5.25451 5.26821 5.30787 5.40419 5.43315 5.52325 5.62746 5.74743 6.23065 6.33732 6.38545 6.42203 6.54258 6.67730 7.05838 7.16642 7.85879 8.40916 9.20347 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022424 B = 0.001752 C = 0.001663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.363835 B =15977.547634 C =16828.987564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.432 5.432 3 C 0.400 3.600 4 O -0.442 6.442 5 N -0.519 5.519 6 C 0.063 3.937 7 C -0.099 4.099 8 C 0.597 3.403 9 O -0.578 6.578 10 N -0.702 5.702 11 C 0.133 3.867 12 C -0.117 4.117 13 C 0.059 3.941 14 N -0.540 5.540 15 C 0.049 3.951 16 C 0.185 3.815 17 N -0.616 5.616 18 C -0.264 4.264 19 H 0.064 0.936 20 C -0.050 4.050 21 N -0.935 5.935 22 Si 0.969 3.031 23 H -0.268 1.268 24 H -0.289 1.289 25 H -0.291 1.291 26 C 0.143 3.857 27 C 0.055 3.945 28 H 0.096 0.904 29 H 0.107 0.893 30 H 0.091 0.909 31 H 0.428 0.572 32 H 0.214 0.786 33 H 0.418 0.582 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.030 0.970 40 H 0.014 0.986 41 H 0.088 0.912 42 H 0.000 1.000 43 H 0.054 0.946 44 H 0.250 0.750 45 H 0.017 0.983 46 H 0.058 0.942 47 H 0.095 0.905 48 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.091 21.445 8.209 28.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.125 5.125 3 C 0.100 3.900 4 O -0.247 6.247 5 N -0.249 5.249 6 C -0.092 4.092 7 C -0.215 4.215 8 C 0.384 3.616 9 O -0.459 6.459 10 N -0.353 5.353 11 C 0.009 3.991 12 C -0.155 4.155 13 C -0.069 4.069 14 N -0.265 5.265 15 C -0.080 4.080 16 C 0.060 3.940 17 N -0.340 5.340 18 C -0.394 4.394 19 H 0.082 0.918 20 C -0.246 4.246 21 N -0.581 5.581 22 Si 0.798 3.202 23 H -0.192 1.192 24 H -0.216 1.216 25 H -0.218 1.218 26 C 0.017 3.983 27 C -0.074 4.074 28 H 0.115 0.885 29 H 0.126 0.874 30 H 0.109 0.891 31 H 0.290 0.710 32 H 0.230 0.770 33 H 0.255 0.745 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.107 0.893 39 H 0.049 0.951 40 H 0.032 0.968 41 H 0.106 0.894 42 H 0.018 0.982 43 H 0.073 0.927 44 H 0.060 0.940 45 H 0.035 0.965 46 H 0.076 0.924 47 H 0.113 0.887 48 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -17.037 21.963 7.995 28.924 hybrid contribution -0.196 -1.085 -0.931 1.443 sum -17.233 20.878 7.065 27.978 Atomic orbital electron populations 1.22423 0.73879 1.06030 1.05384 1.45811 1.09295 1.05331 1.52058 1.20368 0.84367 0.82209 1.03027 1.84773 1.86725 1.16669 1.36523 1.70345 1.17410 1.13698 1.23401 1.23082 0.96219 0.90019 0.99880 1.20566 0.91679 0.88193 1.21045 1.16691 0.85300 0.83479 0.76127 1.90798 1.18275 1.84452 1.52419 1.45516 1.10277 1.06065 1.73467 1.21251 0.96956 0.78555 1.02290 1.21668 0.96931 0.92923 1.03996 1.22021 0.91136 0.92437 1.01293 1.61887 1.23907 1.05379 1.35354 1.22639 0.95855 1.00202 0.89297 1.20631 0.92201 0.82619 0.98598 1.44371 1.58999 1.02380 1.28279 1.19541 1.00169 0.98083 1.21611 0.91805 1.25915 0.95606 0.99978 1.03062 1.70141 1.11405 1.32530 1.44070 0.85174 0.77730 0.78725 0.78611 1.19192 1.21604 1.21800 1.21139 0.90946 0.97081 0.89124 1.22454 0.96746 0.87852 1.00368 0.88511 0.87420 0.89058 0.70977 0.76966 0.74496 0.90964 0.91806 0.90950 0.89702 0.89333 0.95138 0.96805 0.89402 0.98210 0.92728 0.94039 0.96542 0.92386 0.88661 0.96114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.74 10.70 127.77 1.37 2.11 16 2 N -0.43 -7.23 3.20 -651.99 -2.09 -9.32 16 3 C 0.40 6.86 9.01 179.99 1.62 8.49 16 4 O -0.44 -5.04 13.53 -84.90 -1.15 -6.19 16 5 N -0.52 -10.51 11.22 -313.65 -3.52 -14.03 16 6 C 0.06 1.03 11.35 84.13 0.96 1.99 16 7 C -0.10 -1.80 6.92 39.80 0.28 -1.53 16 8 C 0.60 11.82 7.77 86.36 0.67 12.50 16 9 O -0.58 -14.81 14.88 -4.47 -0.07 -14.88 16 10 N -0.70 -10.68 5.54 -467.36 -2.59 -13.27 16 11 C 0.13 2.19 5.68 86.38 0.49 2.68 16 12 C -0.12 -2.08 5.26 30.59 0.16 -1.92 16 13 C 0.06 1.33 4.96 86.30 0.43 1.76 16 14 N -0.54 -17.08 4.63 -895.26 -4.14 -21.23 16 15 C 0.05 1.80 5.46 86.38 0.47 2.28 16 16 C 0.19 8.98 5.36 86.35 0.46 9.45 16 17 N -0.62 -31.42 3.03 -698.13 -2.11 -33.53 16 18 C -0.26 -14.65 9.63 84.03 0.81 -13.84 16 19 H 0.06 3.46 7.85 -2.91 -0.02 3.44 16 20 C -0.05 -2.82 5.07 84.86 0.43 -2.39 16 21 N -0.94 -55.34 11.03 21.65 0.24 -55.10 16 22 Si 0.97 44.94 29.57 68.60 2.03 46.97 16 23 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 24 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 25 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 26 C 0.14 5.96 6.69 86.35 0.58 6.54 16 27 C 0.06 1.82 5.62 86.38 0.49 2.30 16 28 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.09 1.43 6.41 -2.39 -0.02 1.41 16 31 H 0.43 0.18 9.06 -74.06 -0.67 -0.49 16 32 H 0.21 1.98 7.45 -2.91 -0.02 1.96 16 33 H 0.42 4.27 7.40 -92.71 -0.69 3.58 16 34 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 35 H 0.06 1.15 8.14 -2.39 -0.02 1.14 16 36 H 0.07 1.34 6.40 -2.39 -0.02 1.32 16 37 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 38 H 0.09 1.72 7.97 -2.39 -0.02 1.70 16 39 H 0.03 0.70 8.12 -2.38 -0.02 0.68 16 40 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.09 2.74 6.16 -2.39 -0.01 2.73 16 42 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 43 H 0.05 2.98 6.21 -2.39 -0.01 2.97 16 44 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 45 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.06 2.33 7.96 -2.39 -0.02 2.31 16 47 H 0.10 2.52 7.99 -2.39 -0.02 2.50 16 48 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 Total: -1.00 -77.17 387.99 -4.56 -81.73 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -0.36 Total: 8.43 kcal Atomic # 6 Polarization: 21.21 SS G_CDS: 9.21 Total: 30.41 kcal Atomic # 7 Polarization: -132.26 SS G_CDS: -14.22 Total: -146.47 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -1.22 Total: -21.07 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -77.17 -4.56 -81.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752350625.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.462 kcal (2) G-P(sol) polarization free energy of solvation -77.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds