Wall clock time and date at job start Tue Mar 31 2020 20:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42899 * 109.47287 * 2 1 4 4 C 1.36003 * 117.00213 * 180.02562 * 3 2 1 5 5 C 1.39689 * 125.66915 * 180.02562 * 4 3 2 6 6 C 1.37992 * 107.63426 * 179.97438 * 5 4 3 7 7 C 1.47168 * 126.43213 * 180.02562 * 6 5 4 8 8 O 1.21629 * 120.00478 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99871 * 180.02562 * 7 6 5 10 10 C 1.46499 * 119.99979 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47018 * 179.97438 * 10 9 7 12 12 N 1.46905 * 109.47158 * 180.02562 * 11 10 9 13 13 C 1.46899 * 110.99536 * 294.30086 * 12 11 10 14 14 C 1.53239 * 109.33923 * 172.75133 * 13 12 11 15 15 N 1.47081 * 108.52537 * 53.82324 * 14 13 12 16 16 C 1.36940 * 120.87949 * 128.83867 * 15 14 13 17 17 H 1.07996 * 119.99490 * 206.56629 * 16 15 14 18 18 C 1.38808 * 119.99842 * 26.56652 * 16 15 14 19 19 N 1.31615 * 119.99948 * 17.01787 * 18 16 15 20 20 Si 1.86797 * 119.99814 * 197.01581 * 18 16 15 21 21 H 1.48501 * 109.47263 * 90.00305 * 20 18 16 22 22 H 1.48506 * 109.47321 * 210.00255 * 20 18 16 23 23 H 1.48499 * 109.47277 * 330.00217 * 20 18 16 24 24 C 1.47082 * 118.23764 * 308.82174 * 15 14 13 25 25 C 1.46897 * 110.99878 * 169.99941 * 12 11 10 26 26 N 1.36665 * 107.13066 * 0.02562 * 6 5 4 27 27 H 0.96995 * 126.09925 * 179.97438 * 26 6 5 28 28 N 1.31221 * 125.67062 * 359.69076 * 4 3 2 29 29 H 1.09003 * 109.47374 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46932 * 299.99375 * 1 2 3 31 31 H 1.08995 * 109.47215 * 59.99728 * 1 2 3 32 32 H 1.09007 * 109.46844 * 240.00160 * 2 1 3 33 33 H 1.08997 * 109.47732 * 120.00310 * 2 1 3 34 34 H 1.07998 * 126.18413 * 359.96111 * 5 4 3 35 35 H 0.97000 * 119.99928 * 0.02562 * 9 7 6 36 36 H 1.08998 * 109.47287 * 300.00078 * 10 9 7 37 37 H 1.09000 * 109.47191 * 60.00323 * 10 9 7 38 38 H 1.09007 * 109.47124 * 299.99878 * 11 10 9 39 39 H 1.09001 * 109.47693 * 59.99762 * 11 10 9 40 40 H 1.09008 * 109.48948 * 292.70353 * 13 12 11 41 41 H 1.08994 * 109.49667 * 52.78349 * 13 12 11 42 42 H 1.09004 * 109.62648 * 294.11529 * 14 13 12 43 43 H 1.08997 * 109.63367 * 173.53968 * 14 13 12 44 44 H 0.97009 * 119.99600 * 179.97438 * 19 18 16 45 45 H 1.08993 * 109.62778 * 291.47625 * 24 15 14 46 46 H 1.09001 * 109.78801 * 170.98329 * 24 15 14 47 47 H 1.09002 * 109.49366 * 307.21103 * 25 12 11 48 48 H 1.09001 * 109.49594 * 67.29129 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3546 1.5255 -0.0005 5 6 4.0134 2.7572 -0.0001 6 6 5.3702 2.5056 -0.0003 7 6 6.4454 3.5105 0.0005 8 8 6.1707 4.6953 0.0010 9 7 7.7348 3.1178 -0.0004 10 6 8.8051 4.1181 -0.0001 11 6 10.1626 3.4123 -0.0006 12 7 11.2360 4.4153 0.0003 13 6 11.2353 5.1881 -1.2491 14 6 12.2443 6.3358 -1.1364 15 7 13.5488 5.7753 -0.7525 16 6 14.6807 6.0808 -1.4600 17 1 15.5104 5.3896 -1.4760 18 6 14.7616 7.2788 -2.1565 19 7 13.9250 8.2571 -1.8824 20 14 16.0580 7.5023 -3.4828 21 1 15.5079 7.0656 -4.7912 22 1 16.4442 8.9341 -3.5612 23 1 17.2524 6.6850 -3.1503 24 6 13.6053 4.8782 0.4117 25 6 12.5427 3.7878 0.2380 26 7 5.5279 1.1481 -0.0015 27 1 6.3723 0.6709 -0.0022 28 7 4.2529 0.5689 0.0047 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 3.5455 3.7306 0.0001 35 1 7.9540 2.1729 -0.0019 36 1 8.7194 4.7422 -0.8896 37 1 8.7202 4.7409 0.8904 38 1 10.2481 2.7885 0.8892 39 1 10.2480 2.7891 -0.8908 40 1 11.5146 4.5384 -2.0786 41 1 10.2395 5.5950 -1.4245 42 1 11.9115 7.0426 -0.3762 43 1 12.3319 6.8421 -2.0977 44 1 13.9819 9.0945 -2.3689 45 1 13.4032 5.4448 1.3206 46 1 14.5923 4.4205 0.4773 47 1 12.4950 3.1792 1.1411 48 1 12.8037 3.1577 -0.6122 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752367250.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:47 Heat of formation + Delta-G solvation = 41.122456 kcal Electronic energy + Delta-G solvation = -28202.778347 eV Core-core repulsion = 24103.089089 eV Total energy + Delta-G solvation = -4099.689258 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.82073 -39.80187 -38.62514 -38.22266 -35.64964 -34.14553 -32.54566 -31.64163 -30.95514 -30.50331 -29.99311 -28.91718 -26.14764 -24.56697 -23.60161 -22.96581 -22.52019 -21.70898 -21.39311 -20.60595 -19.29403 -19.10094 -17.45410 -16.89211 -16.79072 -16.34736 -16.03590 -15.91255 -15.13472 -14.96157 -14.70774 -14.47910 -14.35414 -14.05776 -13.93442 -13.70047 -13.58434 -13.47073 -13.06275 -13.04122 -12.97123 -12.60562 -12.15311 -11.75952 -11.49782 -11.43735 -11.32748 -11.30706 -11.08843 -10.77912 -10.53930 -10.45573 -10.33595 -10.09190 -9.79348 -9.69256 -9.60423 -9.33378 -9.09257 -8.53224 -7.96912 -6.69861 -5.79882 -3.21554 0.65717 1.95111 2.13435 2.42212 2.86116 2.93665 3.36550 3.43468 3.44857 4.15522 4.22936 4.36097 4.48735 4.51664 4.57677 4.78813 4.85750 4.96695 5.00065 5.06076 5.33690 5.34947 5.36496 5.37713 5.39209 5.55264 5.72106 5.72842 5.81599 5.84071 5.89262 6.00863 6.08339 6.16339 6.27086 6.42932 6.48816 6.63579 6.81875 6.88215 6.96930 7.12271 7.19367 7.45970 7.58242 7.65838 7.70219 7.78800 8.41323 9.19151 9.82352 10.40516 11.28918 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.032063 B = 0.001631 C = 0.001600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.082228 B =17166.755090 C =17498.621154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.059 3.941 3 O -0.287 6.287 4 C 0.263 3.737 5 C -0.190 4.190 6 C 0.063 3.937 7 C 0.583 3.417 8 O -0.505 6.505 9 N -0.721 5.721 10 C 0.120 3.880 11 C 0.044 3.956 12 N -0.528 5.528 13 C 0.030 3.970 14 C 0.177 3.823 15 N -0.595 5.595 16 C -0.254 4.254 17 H 0.066 0.934 18 C 0.002 3.998 19 N -0.902 5.902 20 Si 0.903 3.097 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.279 1.279 24 C 0.148 3.852 25 C 0.046 3.954 26 N -0.449 5.449 27 H 0.445 0.555 28 N -0.317 5.317 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.169 0.831 35 H 0.395 0.605 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.033 0.967 40 H 0.026 0.974 41 H 0.065 0.935 42 H 0.028 0.972 43 H 0.089 0.911 44 H 0.254 0.746 45 H 0.026 0.974 46 H 0.056 0.944 47 H 0.062 0.938 48 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.544 -18.565 4.614 28.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.017 4.017 3 O -0.192 6.192 4 C 0.059 3.941 5 C -0.222 4.222 6 C -0.068 4.068 7 C 0.366 3.634 8 O -0.378 6.378 9 N -0.373 5.373 10 C -0.003 4.003 11 C -0.085 4.085 12 N -0.254 5.254 13 C -0.099 4.099 14 C 0.051 3.949 15 N -0.319 5.319 16 C -0.384 4.384 17 H 0.084 0.916 18 C -0.196 4.196 19 N -0.546 5.546 20 Si 0.733 3.267 21 H -0.215 1.215 22 H -0.217 1.217 23 H -0.205 1.205 24 C 0.021 3.979 25 C -0.083 4.083 26 N -0.168 5.168 27 H 0.290 0.710 28 N -0.160 5.160 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.186 0.814 35 H 0.228 0.772 36 H 0.096 0.904 37 H 0.103 0.897 38 H 0.092 0.908 39 H 0.051 0.949 40 H 0.045 0.955 41 H 0.083 0.917 42 H 0.046 0.954 43 H 0.107 0.893 44 H 0.064 0.936 45 H 0.044 0.956 46 H 0.075 0.925 47 H 0.081 0.919 48 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -21.920 -18.153 4.928 28.884 hybrid contribution 1.257 -0.617 -1.376 1.963 sum -20.663 -18.770 3.552 28.141 Atomic orbital electron populations 1.21801 0.92501 1.03049 1.03648 1.22755 0.95615 0.81009 1.02298 1.86336 1.13611 1.29877 1.89335 1.20238 0.84509 0.91899 0.97419 1.21116 0.89686 0.98418 1.12938 1.21285 0.95405 0.84323 1.05746 1.16971 0.81413 0.87261 0.77739 1.90914 1.82651 1.15979 1.48211 1.45836 1.05639 1.10643 1.75165 1.21521 0.84268 0.90376 1.04132 1.22205 0.91223 0.94423 1.00684 1.61881 1.03168 1.23533 1.36781 1.23026 1.00758 0.97627 0.88471 1.20874 0.82207 0.90592 1.01184 1.44123 1.04229 1.54077 1.29427 1.19199 0.95126 0.99810 1.24265 0.91613 1.25025 0.98585 0.94816 1.01209 1.70028 1.39564 1.03579 1.41470 0.86285 0.81254 0.76980 0.82206 1.21515 1.21702 1.20482 1.20971 0.94991 0.90900 0.91005 1.22636 0.89511 0.97212 0.98950 1.46056 1.06966 1.03444 1.60296 0.70951 1.77334 0.88089 1.20175 1.30356 0.90156 0.91402 0.91390 0.91679 0.91677 0.81374 0.77185 0.90380 0.89710 0.90770 0.94892 0.95541 0.91710 0.95381 0.89263 0.93551 0.95571 0.92527 0.91947 0.95308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 10.28 37.16 0.38 -0.33 16 2 C 0.06 0.40 6.33 37.16 0.24 0.64 16 3 O -0.29 -2.79 10.22 -19.75 -0.20 -3.00 16 4 C 0.26 2.76 7.85 -17.27 -0.14 2.63 16 5 C -0.19 -2.02 10.63 -39.13 -0.42 -2.44 16 6 C 0.06 0.61 7.12 -82.18 -0.59 0.03 16 7 C 0.58 6.54 7.80 -12.63 -0.10 6.44 16 8 O -0.51 -7.69 16.90 5.25 0.09 -7.60 16 9 N -0.72 -6.47 5.55 -61.47 -0.34 -6.81 16 10 C 0.12 1.40 5.60 -4.04 -0.02 1.37 16 11 C 0.04 0.51 5.08 -3.82 -0.02 0.50 16 12 N -0.53 -8.62 4.63 -234.31 -1.08 -9.71 16 13 C 0.03 0.56 5.46 -3.70 -0.02 0.54 16 14 C 0.18 4.21 5.42 -3.60 -0.02 4.19 16 15 N -0.60 -14.81 3.04 -172.01 -0.52 -15.33 16 16 C -0.25 -6.93 9.63 -15.06 -0.15 -7.07 16 17 H 0.07 1.75 7.88 -52.49 -0.41 1.34 16 18 C 0.00 0.06 4.93 -17.43 -0.09 -0.02 16 19 N -0.90 -26.08 11.15 55.49 0.62 -25.46 16 20 Si 0.90 21.54 29.59 -169.99 -5.03 16.51 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 C 0.15 3.05 6.69 -3.60 -0.02 3.02 16 25 C 0.05 0.77 5.62 -3.70 -0.02 0.75 16 26 N -0.45 -3.50 7.33 33.41 0.24 -3.26 16 27 H 0.44 1.90 8.23 -182.65 -1.50 0.39 16 28 N -0.32 -3.12 12.05 30.46 0.37 -2.76 16 29 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.17 1.69 8.06 -52.49 -0.42 1.26 16 35 H 0.39 2.18 7.65 -40.82 -0.31 1.87 16 36 H 0.08 1.04 6.40 -51.93 -0.33 0.71 16 37 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.07 0.74 7.97 -51.93 -0.41 0.33 16 39 H 0.03 0.37 8.13 -51.93 -0.42 -0.05 16 40 H 0.03 0.51 8.14 -51.92 -0.42 0.09 16 41 H 0.06 1.10 6.16 -51.93 -0.32 0.78 16 42 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.09 2.36 6.12 -51.93 -0.32 2.04 16 44 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 45 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.06 1.12 7.96 -51.93 -0.41 0.70 16 47 H 0.06 0.86 7.99 -51.93 -0.41 0.45 16 48 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 392.50 15.07 5.91 5.91 Total: -1.00 -33.37 392.50 -9.57 -42.94 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -8.65 Total: -1.69 kcal Atomic # 6 Polarization: 11.22 SS G_CDS: -0.98 Total: 10.24 kcal Atomic # 7 Polarization: -62.59 SS G_CDS: -0.72 Total: -63.31 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: -0.11 Total: -10.60 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.51 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.37 -9.57 -42.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752367250.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.059 kcal (2) G-P(sol) polarization free energy of solvation -33.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds