Wall clock time and date at job start Tue Mar 31 2020 20:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42899 * 109.47287 * 2 1 4 4 C 1.36003 * 117.00213 * 180.02562 * 3 2 1 5 5 C 1.39689 * 125.66915 * 180.02562 * 4 3 2 6 6 C 1.37992 * 107.63426 * 179.97438 * 5 4 3 7 7 C 1.47168 * 126.43213 * 180.02562 * 6 5 4 8 8 O 1.21629 * 120.00478 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99871 * 180.02562 * 7 6 5 10 10 C 1.46499 * 119.99979 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47018 * 179.97438 * 10 9 7 12 12 N 1.46905 * 109.47158 * 180.02562 * 11 10 9 13 13 C 1.46899 * 110.99536 * 294.30086 * 12 11 10 14 14 C 1.53239 * 109.33923 * 172.75133 * 13 12 11 15 15 N 1.47081 * 108.52537 * 53.82324 * 14 13 12 16 16 C 1.36940 * 120.87949 * 128.83867 * 15 14 13 17 17 H 1.07996 * 119.99490 * 206.56629 * 16 15 14 18 18 C 1.38808 * 119.99842 * 26.56652 * 16 15 14 19 19 N 1.31615 * 119.99948 * 17.01787 * 18 16 15 20 20 Si 1.86797 * 119.99814 * 197.01581 * 18 16 15 21 21 H 1.48501 * 109.47263 * 90.00305 * 20 18 16 22 22 H 1.48506 * 109.47321 * 210.00255 * 20 18 16 23 23 H 1.48499 * 109.47277 * 330.00217 * 20 18 16 24 24 C 1.47082 * 118.23764 * 308.82174 * 15 14 13 25 25 C 1.46897 * 110.99878 * 169.99941 * 12 11 10 26 26 N 1.36665 * 107.13066 * 0.02562 * 6 5 4 27 27 H 0.96995 * 126.09925 * 179.97438 * 26 6 5 28 28 N 1.31221 * 125.67062 * 359.69076 * 4 3 2 29 29 H 1.09003 * 109.47374 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46932 * 299.99375 * 1 2 3 31 31 H 1.08995 * 109.47215 * 59.99728 * 1 2 3 32 32 H 1.09007 * 109.46844 * 240.00160 * 2 1 3 33 33 H 1.08997 * 109.47732 * 120.00310 * 2 1 3 34 34 H 1.07998 * 126.18413 * 359.96111 * 5 4 3 35 35 H 0.97000 * 119.99928 * 0.02562 * 9 7 6 36 36 H 1.08998 * 109.47287 * 300.00078 * 10 9 7 37 37 H 1.09000 * 109.47191 * 60.00323 * 10 9 7 38 38 H 1.09007 * 109.47124 * 299.99878 * 11 10 9 39 39 H 1.09001 * 109.47693 * 59.99762 * 11 10 9 40 40 H 1.09008 * 109.48948 * 292.70353 * 13 12 11 41 41 H 1.08994 * 109.49667 * 52.78349 * 13 12 11 42 42 H 1.09004 * 109.62648 * 294.11529 * 14 13 12 43 43 H 1.08997 * 109.63367 * 173.53968 * 14 13 12 44 44 H 0.97009 * 119.99600 * 179.97438 * 19 18 16 45 45 H 1.08993 * 109.62778 * 291.47625 * 24 15 14 46 46 H 1.09001 * 109.78801 * 170.98329 * 24 15 14 47 47 H 1.09002 * 109.49366 * 307.21103 * 25 12 11 48 48 H 1.09001 * 109.49594 * 67.29129 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3546 1.5255 -0.0005 5 6 4.0134 2.7572 -0.0001 6 6 5.3702 2.5056 -0.0003 7 6 6.4454 3.5105 0.0005 8 8 6.1707 4.6953 0.0010 9 7 7.7348 3.1178 -0.0004 10 6 8.8051 4.1181 -0.0001 11 6 10.1626 3.4123 -0.0006 12 7 11.2360 4.4153 0.0003 13 6 11.2353 5.1881 -1.2491 14 6 12.2443 6.3358 -1.1364 15 7 13.5488 5.7753 -0.7525 16 6 14.6807 6.0808 -1.4600 17 1 15.5104 5.3896 -1.4760 18 6 14.7616 7.2788 -2.1565 19 7 13.9250 8.2571 -1.8824 20 14 16.0580 7.5023 -3.4828 21 1 15.5079 7.0656 -4.7912 22 1 16.4442 8.9341 -3.5612 23 1 17.2524 6.6850 -3.1503 24 6 13.6053 4.8782 0.4117 25 6 12.5427 3.7878 0.2380 26 7 5.5279 1.1481 -0.0015 27 1 6.3723 0.6709 -0.0022 28 7 4.2529 0.5689 0.0047 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 3.5455 3.7306 0.0001 35 1 7.9540 2.1729 -0.0019 36 1 8.7194 4.7422 -0.8896 37 1 8.7202 4.7409 0.8904 38 1 10.2481 2.7885 0.8892 39 1 10.2480 2.7891 -0.8908 40 1 11.5146 4.5384 -2.0786 41 1 10.2395 5.5950 -1.4245 42 1 11.9115 7.0426 -0.3762 43 1 12.3319 6.8421 -2.0977 44 1 13.9819 9.0945 -2.3689 45 1 13.4032 5.4448 1.3206 46 1 14.5923 4.4205 0.4773 47 1 12.4950 3.1792 1.1411 48 1 12.8037 3.1577 -0.6122 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752367250.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:45 Heat of formation + Delta-G solvation = 13.439338 kcal Electronic energy + Delta-G solvation = -28203.978777 eV Core-core repulsion = 24103.089089 eV Total energy + Delta-G solvation = -4100.889688 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.58310 -40.71468 -39.72208 -39.24246 -36.93889 -35.58617 -33.43866 -33.00820 -31.88453 -31.63644 -31.18742 -30.16648 -27.72907 -25.53138 -24.83706 -24.28825 -23.73691 -22.68597 -22.25640 -21.43871 -20.83116 -20.05055 -18.71701 -18.12415 -17.47030 -17.44410 -16.90221 -16.85440 -16.74840 -16.09258 -15.94857 -15.56760 -15.37753 -15.28834 -15.08119 -14.92108 -14.90821 -14.68004 -14.52686 -14.11400 -13.57133 -13.42826 -13.21723 -13.00475 -12.84886 -12.66999 -12.62468 -12.58514 -12.23221 -12.07058 -12.01572 -11.85343 -11.84554 -11.55625 -11.49426 -11.34335 -10.58837 -10.47615 -10.18099 -9.81664 -9.29380 -8.68105 -7.87351 -5.32135 -0.14700 1.30605 1.33798 1.46806 1.47822 1.56919 1.58120 2.00350 2.25622 2.50939 3.05552 3.28214 3.45218 3.55124 3.69194 3.82490 4.05647 4.06698 4.11706 4.21021 4.30466 4.36184 4.37436 4.40165 4.46625 4.56578 4.66098 4.72598 4.79308 4.80779 4.92097 4.94601 4.97573 5.00286 5.05673 5.14086 5.22844 5.23675 5.38963 5.61672 5.69637 5.75301 6.13821 6.17540 6.22935 6.28224 6.37621 6.40223 6.87844 7.13607 7.84905 8.38454 9.19351 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.032063 B = 0.001631 C = 0.001600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.082228 B =17166.755090 C =17498.621154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.053 3.947 3 O -0.300 6.300 4 C 0.253 3.747 5 C -0.208 4.208 6 C 0.068 3.932 7 C 0.588 3.412 8 O -0.550 6.550 9 N -0.700 5.700 10 C 0.127 3.873 11 C 0.052 3.948 12 N -0.542 5.542 13 C 0.049 3.951 14 C 0.184 3.816 15 N -0.614 5.614 16 C -0.264 4.264 17 H 0.070 0.930 18 C -0.052 4.052 19 N -0.936 5.936 20 Si 0.968 3.032 21 H -0.286 1.286 22 H -0.296 1.296 23 H -0.267 1.267 24 C 0.140 3.860 25 C 0.059 3.941 26 N -0.428 5.428 27 H 0.461 0.539 28 N -0.320 5.320 29 H 0.101 0.899 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.165 0.835 35 H 0.416 0.584 36 H 0.059 0.941 37 H 0.070 0.930 38 H 0.106 0.894 39 H 0.050 0.950 40 H 0.024 0.976 41 H 0.078 0.922 42 H -0.004 1.004 43 H 0.054 0.946 44 H 0.250 0.750 45 H 0.015 0.985 46 H 0.062 0.938 47 H 0.102 0.898 48 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.763 -21.814 4.861 31.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.022 4.022 3 O -0.205 6.205 4 C 0.051 3.949 5 C -0.240 4.240 6 C -0.064 4.064 7 C 0.372 3.628 8 O -0.426 6.426 9 N -0.353 5.353 10 C 0.004 3.996 11 C -0.076 4.076 12 N -0.267 5.267 13 C -0.080 4.080 14 C 0.058 3.942 15 N -0.339 5.339 16 C -0.394 4.394 17 H 0.087 0.913 18 C -0.247 4.247 19 N -0.583 5.583 20 Si 0.796 3.204 21 H -0.213 1.213 22 H -0.223 1.223 23 H -0.192 1.192 24 C 0.015 3.985 25 C -0.070 4.070 26 N -0.148 5.148 27 H 0.311 0.689 28 N -0.163 5.163 29 H 0.120 0.880 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.183 0.817 35 H 0.253 0.747 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.124 0.876 39 H 0.068 0.932 40 H 0.042 0.958 41 H 0.097 0.903 42 H 0.014 0.986 43 H 0.073 0.927 44 H 0.059 0.941 45 H 0.033 0.967 46 H 0.080 0.920 47 H 0.120 0.880 48 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -22.121 -21.505 5.195 31.286 hybrid contribution 1.313 0.337 -1.370 1.928 sum -20.807 -21.169 3.825 29.928 Atomic orbital electron populations 1.21828 0.90882 1.04386 1.03481 1.22984 0.96905 0.79838 1.02473 1.86330 1.13314 1.31615 1.89257 1.20321 0.84976 0.91860 0.97786 1.21243 0.90365 0.98684 1.13706 1.20935 0.94630 0.84768 1.06053 1.17065 0.82039 0.86752 0.76899 1.90902 1.83350 1.17919 1.50417 1.45545 1.04354 1.11426 1.73929 1.21281 0.85052 0.90674 1.02640 1.22220 0.89013 0.93415 1.02985 1.61743 1.04401 1.25417 1.35158 1.22625 0.99542 0.96136 0.89724 1.20615 0.83476 0.91983 0.98173 1.44412 1.03929 1.54659 1.30857 1.19562 0.95869 0.99708 1.24244 0.91268 1.25793 1.00868 0.94675 1.03377 1.70197 1.41536 1.03901 1.42630 0.85259 0.79225 0.76470 0.79444 1.21273 1.22295 1.19177 1.21173 0.97163 0.91242 0.88959 1.22466 0.88175 0.95592 1.00803 1.46046 1.07285 1.02667 1.58850 0.68929 1.77309 0.88578 1.20142 1.30313 0.88034 0.91528 0.91577 0.91508 0.91427 0.81703 0.74704 0.92227 0.91135 0.87605 0.93200 0.95818 0.90346 0.98561 0.92740 0.94134 0.96718 0.91969 0.87991 0.95265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 10.28 71.98 0.74 -0.44 16 2 C 0.05 0.67 6.33 71.98 0.46 1.12 16 3 O -0.30 -5.70 10.22 -93.59 -0.96 -6.65 16 4 C 0.25 5.12 7.85 85.13 0.67 5.79 16 5 C -0.21 -4.34 10.63 22.56 0.24 -4.10 16 6 C 0.07 1.23 7.12 40.68 0.29 1.52 16 7 C 0.59 12.41 7.80 86.59 0.68 13.08 16 8 O -0.55 -16.74 16.90 -4.12 -0.07 -16.81 16 9 N -0.70 -10.67 5.55 -466.63 -2.59 -13.26 16 10 C 0.13 2.69 5.60 86.38 0.48 3.17 16 11 C 0.05 1.02 5.08 86.30 0.44 1.45 16 12 N -0.54 -16.41 4.63 -895.22 -4.14 -20.55 16 13 C 0.05 1.80 5.46 86.38 0.47 2.27 16 14 C 0.18 8.99 5.42 86.35 0.47 9.46 16 15 N -0.61 -30.92 3.04 -698.13 -2.12 -33.04 16 16 C -0.26 -14.50 9.63 84.03 0.81 -13.69 16 17 H 0.07 3.67 7.88 -2.91 -0.02 3.65 16 18 C -0.05 -2.91 4.93 84.86 0.42 -2.49 16 19 N -0.94 -56.09 11.15 21.65 0.24 -55.85 16 20 Si 0.97 44.88 29.59 68.60 2.03 46.91 16 21 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 22 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 23 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 24 C 0.14 5.64 6.69 86.35 0.58 6.22 16 25 C 0.06 1.77 5.62 86.38 0.49 2.25 16 26 N -0.43 -5.63 7.33 -48.20 -0.35 -5.98 16 27 H 0.46 2.35 8.23 -213.36 -1.76 0.59 16 28 N -0.32 -5.74 12.05 -170.76 -2.06 -7.80 16 29 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 33 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.17 3.42 8.06 -2.91 -0.02 3.39 16 35 H 0.42 2.90 7.65 -92.71 -0.71 2.19 16 36 H 0.06 1.52 6.40 -2.39 -0.02 1.50 16 37 H 0.07 1.74 8.14 -2.39 -0.02 1.73 16 38 H 0.11 1.51 7.97 -2.38 -0.02 1.49 16 39 H 0.05 0.88 8.13 -2.39 -0.02 0.86 16 40 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16 41 H 0.08 2.65 6.16 -2.39 -0.01 2.63 16 42 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 43 H 0.05 3.02 6.12 -2.39 -0.01 3.00 16 44 H 0.25 14.50 8.31 -92.70 -0.77 13.73 16 45 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.06 2.38 7.96 -2.39 -0.02 2.36 16 47 H 0.10 2.33 7.99 -2.39 -0.02 2.31 16 48 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -75.14 392.50 -4.28 -79.42 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -1.48 Total: 8.01 kcal Atomic # 6 Polarization: 18.39 SS G_CDS: 7.22 Total: 25.61 kcal Atomic # 7 Polarization: -125.46 SS G_CDS: -11.03 Total: -136.48 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -1.03 Total: -23.47 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -75.14 -4.28 -79.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752367250.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.855 kcal (2) G-P(sol) polarization free energy of solvation -75.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds