Wall clock time and date at job start Tue Mar 31 2020 20:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35849 * 117.00057 * 2 1 4 4 N 1.30815 * 126.05867 * 0.17379 * 3 2 1 5 5 N 1.39924 * 108.87708 * 180.29419 * 4 3 2 6 6 C 1.46495 * 125.68493 * 179.68757 * 5 4 3 7 7 C 1.34158 * 108.62028 * 359.71633 * 5 4 3 8 8 C 1.38123 * 107.51444 * 359.97438 * 7 5 4 9 9 C 1.47253 * 126.45071 * 180.02562 * 8 7 5 10 10 O 1.21623 * 120.00174 * 180.02562 * 9 8 7 11 11 N 1.34771 * 119.99769 * 0.03066 * 9 8 7 12 12 C 1.46503 * 120.00070 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47305 * 179.97438 * 12 11 9 14 14 N 1.46899 * 109.47462 * 179.97438 * 13 12 11 15 15 C 1.46900 * 111.00163 * 169.99896 * 14 13 12 16 16 C 1.53245 * 109.33848 * 172.74528 * 15 14 13 17 17 N 1.47085 * 108.52064 * 53.82868 * 16 15 14 18 18 C 1.36932 * 120.88213 * 128.79288 * 17 16 15 19 19 H 1.08002 * 119.99977 * 333.51665 * 18 17 16 20 20 C 1.38807 * 119.99998 * 153.50990 * 18 17 16 21 21 N 1.31621 * 119.99922 * 159.47661 * 20 18 17 22 22 Si 1.86799 * 120.00305 * 339.47796 * 20 18 17 23 23 H 1.48496 * 109.47486 * 91.94910 * 22 20 18 24 24 H 1.48498 * 109.47306 * 211.95251 * 22 20 18 25 25 H 1.48508 * 109.46864 * 331.95033 * 22 20 18 26 26 C 1.47080 * 118.23666 * 308.81221 * 17 16 15 27 27 C 1.46896 * 110.99839 * 45.68987 * 14 13 12 28 28 H 1.09000 * 109.47472 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46879 * 299.99914 * 1 2 3 30 30 H 1.09003 * 109.47475 * 59.99673 * 1 2 3 31 31 H 1.08995 * 109.47726 * 270.03075 * 6 5 4 32 32 H 1.09007 * 109.47193 * 30.03340 * 6 5 4 33 33 H 1.09005 * 109.47206 * 150.02689 * 6 5 4 34 34 H 1.08001 * 126.24028 * 179.97438 * 7 5 4 35 35 H 0.97004 * 120.00177 * 359.97438 * 11 9 8 36 36 H 1.08999 * 109.47402 * 59.99143 * 12 11 9 37 37 H 1.09000 * 109.46851 * 299.99234 * 12 11 9 38 38 H 1.08999 * 109.47456 * 59.99341 * 13 12 11 39 39 H 1.09008 * 109.47004 * 299.99588 * 13 12 11 40 40 H 1.09000 * 109.49448 * 52.78501 * 15 14 13 41 41 H 1.08995 * 109.49153 * 292.70371 * 15 14 13 42 42 H 1.08998 * 109.62846 * 173.53869 * 16 15 14 43 43 H 1.08997 * 109.62949 * 293.92586 * 16 15 14 44 44 H 0.97009 * 119.99909 * 179.97438 * 21 20 18 45 45 H 1.08995 * 109.62655 * 170.89395 * 26 17 16 46 46 H 1.08993 * 109.63223 * 291.48019 * 26 17 16 47 47 H 1.09001 * 109.49168 * 67.30395 * 27 14 13 48 48 H 1.08994 * 109.52148 * 307.23052 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2104 0.0000 4 7 1.4531 2.3766 0.0032 5 7 2.4282 3.3800 -0.0048 6 6 2.1705 4.8221 -0.0108 7 6 3.6385 2.8012 -0.0068 8 6 3.4452 1.4336 0.0005 9 6 4.4955 0.4015 0.0019 10 8 4.1911 -0.7760 0.0082 11 7 5.7942 0.7618 -0.0038 12 6 6.8392 -0.2650 -0.0030 13 6 8.2139 0.4065 -0.0108 14 7 9.2618 -0.6230 -0.0094 15 6 10.5831 -0.0297 -0.2548 16 6 11.6631 -1.1004 -0.0664 17 7 11.3313 -2.2534 -0.9173 18 6 12.2591 -2.7865 -1.7716 19 1 13.0560 -2.1682 -2.1576 20 6 12.1755 -4.1218 -2.1417 21 7 12.7791 -4.5412 -3.2335 22 14 11.2062 -5.3235 -1.0901 23 1 9.8083 -5.3989 -1.5853 24 1 11.8326 -6.6676 -1.1693 25 1 11.2072 -4.8593 0.3206 26 6 9.9763 -2.8183 -0.8263 27 6 8.9627 -1.6799 -0.9847 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 2.1025 5.1749 -1.0399 32 1 1.2324 5.0257 0.5058 33 1 2.9846 5.3389 0.4974 34 1 4.5903 3.3115 -0.0130 35 1 6.0370 1.7009 -0.0091 36 1 6.7354 -0.8898 -0.8900 37 1 6.7412 -0.8824 0.8899 38 1 8.3181 1.0317 0.8760 39 1 8.3118 1.0238 -0.9039 40 1 10.7523 0.7853 0.4490 41 1 10.6256 0.3545 -1.2739 42 1 12.6330 -0.6974 -0.3579 43 1 11.6940 -1.4095 0.9783 44 1 12.7209 -5.4744 -3.4919 45 1 9.8311 -3.5509 -1.6201 46 1 9.8427 -3.2949 0.1447 47 1 9.0279 -1.2728 -1.9937 48 1 7.9568 -2.0618 -0.8108 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752371030.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:01 Heat of formation + Delta-G solvation = 61.363255 kcal Electronic energy + Delta-G solvation = -28973.513232 eV Core-core repulsion = 24874.701681 eV Total energy + Delta-G solvation = -4098.811551 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.88279 -39.37957 -38.59052 -38.36802 -35.50220 -33.98939 -33.33930 -31.72325 -30.97700 -30.45523 -28.85879 -28.27114 -26.76397 -25.86731 -23.49189 -23.30778 -22.67155 -21.47634 -21.06553 -20.45091 -19.41559 -18.37989 -17.26496 -16.80256 -16.67956 -16.27794 -15.94991 -15.58694 -15.41260 -15.35159 -15.06804 -14.55561 -14.38996 -14.07619 -14.02362 -13.84459 -13.70584 -13.34021 -13.22713 -13.12615 -12.73997 -12.42424 -12.25558 -11.89656 -11.76995 -11.65825 -11.57352 -11.34486 -11.23335 -10.84918 -10.57041 -10.27349 -10.01241 -9.95922 -9.77856 -9.56908 -9.41183 -9.12381 -8.81942 -8.61429 -8.02229 -6.92606 -5.90830 -3.26110 1.04838 1.73035 1.93218 2.82652 3.13481 3.34578 3.39306 3.54911 3.59569 3.91010 4.15087 4.29330 4.54958 4.58604 4.61090 4.79865 4.82237 4.85046 4.94609 4.99226 5.00407 5.10828 5.17363 5.20923 5.36534 5.39451 5.45246 5.66024 5.73126 5.88431 5.94065 5.99656 6.04328 6.11944 6.23280 6.27333 6.37987 6.41221 6.62052 6.69212 6.83102 6.91396 7.19080 7.36440 7.41973 7.49136 7.98035 8.26299 8.36010 8.96871 9.75973 10.15304 11.25086 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019336 B = 0.002160 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.695735 B =12960.442381 C =14026.122465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.266 6.266 3 C 0.317 3.683 4 N -0.353 5.353 5 N -0.348 5.348 6 C 0.099 3.901 7 C 0.122 3.878 8 C -0.289 4.289 9 C 0.592 3.408 10 O -0.527 6.527 11 N -0.729 5.729 12 C 0.116 3.884 13 C 0.046 3.954 14 N -0.530 5.530 15 C 0.044 3.956 16 C 0.152 3.848 17 N -0.609 5.609 18 C -0.259 4.259 19 H 0.085 0.915 20 C 0.021 3.979 21 N -0.910 5.910 22 Si 0.883 3.117 23 H -0.287 1.287 24 H -0.304 1.304 25 H -0.269 1.269 26 C 0.129 3.871 27 C 0.033 3.967 28 H 0.103 0.897 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.190 0.810 35 H 0.393 0.607 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.035 0.965 40 H 0.066 0.934 41 H 0.034 0.966 42 H 0.065 0.935 43 H 0.031 0.969 44 H 0.262 0.738 45 H 0.075 0.925 46 H 0.034 0.966 47 H 0.037 0.963 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.722 22.543 8.100 33.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.168 6.168 3 C 0.112 3.888 4 N -0.193 5.193 5 N -0.129 5.129 6 C -0.042 4.042 7 C -0.031 4.031 8 C -0.305 4.305 9 C 0.379 3.621 10 O -0.403 6.403 11 N -0.382 5.382 12 C -0.007 4.007 13 C -0.083 4.083 14 N -0.255 5.255 15 C -0.085 4.085 16 C 0.025 3.975 17 N -0.333 5.333 18 C -0.387 4.387 19 H 0.103 0.897 20 C -0.177 4.177 21 N -0.553 5.553 22 Si 0.714 3.286 23 H -0.215 1.215 24 H -0.232 1.232 25 H -0.194 1.194 26 C 0.004 3.996 27 C -0.096 4.096 28 H 0.121 0.879 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.100 0.900 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.207 0.793 35 H 0.227 0.773 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.053 0.947 40 H 0.085 0.915 41 H 0.052 0.948 42 H 0.084 0.916 43 H 0.049 0.951 44 H 0.072 0.928 45 H 0.093 0.907 46 H 0.052 0.948 47 H 0.055 0.945 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -23.926 21.690 8.457 33.383 hybrid contribution 0.086 -0.058 -0.347 0.362 sum -23.839 21.632 8.110 33.197 Atomic orbital electron populations 1.23052 0.77625 1.03962 1.01931 1.86534 1.21848 1.20298 1.88096 1.20429 0.90099 0.85295 0.93016 1.77350 1.13060 0.94575 1.34303 1.47693 1.03178 1.06600 1.55460 1.22035 1.04663 0.73371 1.04089 1.23051 0.91297 0.92101 0.96610 1.19713 0.91879 0.92532 1.26361 1.17033 0.81292 0.87566 0.76247 1.90842 1.82083 1.18022 1.49338 1.45726 1.05502 1.09965 1.77013 1.21541 0.85194 0.90461 1.03510 1.22235 0.90665 0.94563 1.00789 1.61981 1.01559 1.11090 1.50909 1.22644 0.89377 0.97593 0.98931 1.20992 0.95007 0.87409 0.94043 1.44421 1.08141 1.34952 1.45799 1.18912 1.07985 0.93187 1.18638 0.89722 1.25263 0.98223 0.96889 0.97366 1.69840 1.46842 1.16219 1.22424 0.86955 0.78690 0.80587 0.82404 1.21484 1.23208 1.19402 1.21446 0.84395 0.94131 0.99672 1.22821 0.99766 0.93831 0.93184 0.87874 0.92458 0.92440 0.90044 0.88779 0.88713 0.79285 0.77335 0.90753 0.90372 0.90547 0.94703 0.91520 0.94798 0.91647 0.95146 0.92798 0.90694 0.94817 0.94502 0.90749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.70 101.05 1.08 1.34 16 2 O -0.27 -3.56 9.98 -24.63 -0.25 -3.80 16 3 C 0.32 3.99 7.85 -16.66 -0.13 3.86 16 4 N -0.35 -3.75 11.90 30.79 0.37 -3.39 16 5 N -0.35 -2.44 3.97 -67.60 -0.27 -2.71 16 6 C 0.10 0.20 11.44 59.84 0.68 0.89 16 7 C 0.12 0.81 10.98 -16.58 -0.18 0.62 16 8 C -0.29 -3.26 6.14 -104.95 -0.64 -3.91 16 9 C 0.59 8.03 7.81 -12.60 -0.10 7.93 16 10 O -0.53 -9.65 16.43 -0.10 0.00 -9.65 16 11 N -0.73 -7.63 5.54 -61.44 -0.34 -7.97 16 12 C 0.12 1.48 4.92 -4.04 -0.02 1.46 16 13 C 0.05 0.55 5.38 -3.83 -0.02 0.53 16 14 N -0.53 -8.55 4.78 -234.32 -1.12 -9.67 16 15 C 0.04 0.71 5.58 -3.70 -0.02 0.69 16 16 C 0.15 3.01 6.69 -3.60 -0.02 2.98 16 17 N -0.61 -14.80 2.82 -172.01 -0.48 -15.29 16 18 C -0.26 -7.34 10.08 -15.06 -0.15 -7.50 16 19 H 0.09 2.54 8.05 -52.49 -0.42 2.12 16 20 C 0.02 0.63 5.24 -17.43 -0.09 0.54 16 21 N -0.91 -28.30 13.97 55.49 0.78 -27.53 16 22 Si 0.88 23.02 24.31 -169.99 -4.13 18.89 16 23 H -0.29 -7.24 6.58 56.52 0.37 -6.87 16 24 H -0.30 -8.03 7.11 56.52 0.40 -7.63 16 25 H -0.27 -6.95 6.61 56.52 0.37 -6.57 16 26 C 0.13 2.94 4.35 -3.60 -0.02 2.92 16 27 C 0.03 0.61 5.04 -3.70 -0.02 0.59 16 28 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.09 8.14 -51.93 -0.42 -0.34 16 32 H 0.09 0.18 8.14 -51.92 -0.42 -0.25 16 33 H 0.09 -0.07 8.14 -51.93 -0.42 -0.49 16 34 H 0.19 0.32 7.46 -52.49 -0.39 -0.07 16 35 H 0.39 2.56 7.39 -40.82 -0.30 2.26 16 36 H 0.07 1.09 6.18 -51.93 -0.32 0.76 16 37 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.03 0.40 8.08 -51.92 -0.42 -0.02 16 40 H 0.07 0.89 8.11 -51.93 -0.42 0.46 16 41 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.07 1.26 7.95 -51.93 -0.41 0.84 16 43 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 45 H 0.08 1.85 4.60 -51.93 -0.24 1.61 16 46 H 0.03 0.78 6.94 -51.93 -0.36 0.42 16 47 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.07 1.27 5.73 -51.93 -0.30 0.97 16 LS Contribution 384.58 15.07 5.80 5.80 Total: -1.00 -39.02 384.58 -6.74 -45.76 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -7.43 Total: -3.40 kcal Atomic # 6 Polarization: 12.61 SS G_CDS: 0.35 Total: 12.96 kcal Atomic # 7 Polarization: -65.48 SS G_CDS: -1.07 Total: -66.56 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: -0.25 Total: -13.45 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -4.13 Total: 18.89 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -39.02 -6.74 -45.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752371030.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.124 kcal (2) G-P(sol) polarization free energy of solvation -39.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds