Wall clock time and date at job start Tue Mar 31 2020 20:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35849 * 117.00057 * 2 1 4 4 N 1.30815 * 126.05867 * 0.17379 * 3 2 1 5 5 N 1.39924 * 108.87708 * 180.29419 * 4 3 2 6 6 C 1.46495 * 125.68493 * 179.68757 * 5 4 3 7 7 C 1.34158 * 108.62028 * 359.71633 * 5 4 3 8 8 C 1.38123 * 107.51444 * 359.97438 * 7 5 4 9 9 C 1.47253 * 126.45071 * 180.02562 * 8 7 5 10 10 O 1.21623 * 120.00174 * 180.02562 * 9 8 7 11 11 N 1.34771 * 119.99769 * 0.03066 * 9 8 7 12 12 C 1.46503 * 120.00070 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47305 * 179.97438 * 12 11 9 14 14 N 1.46899 * 109.47462 * 179.97438 * 13 12 11 15 15 C 1.46900 * 111.00163 * 169.99896 * 14 13 12 16 16 C 1.53245 * 109.33848 * 172.74528 * 15 14 13 17 17 N 1.47085 * 108.52064 * 53.82868 * 16 15 14 18 18 C 1.36932 * 120.88213 * 128.79288 * 17 16 15 19 19 H 1.08002 * 119.99977 * 333.51665 * 18 17 16 20 20 C 1.38807 * 119.99998 * 153.50990 * 18 17 16 21 21 N 1.31621 * 119.99922 * 159.47661 * 20 18 17 22 22 Si 1.86799 * 120.00305 * 339.47796 * 20 18 17 23 23 H 1.48496 * 109.47486 * 91.94910 * 22 20 18 24 24 H 1.48498 * 109.47306 * 211.95251 * 22 20 18 25 25 H 1.48508 * 109.46864 * 331.95033 * 22 20 18 26 26 C 1.47080 * 118.23666 * 308.81221 * 17 16 15 27 27 C 1.46896 * 110.99839 * 45.68987 * 14 13 12 28 28 H 1.09000 * 109.47472 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46879 * 299.99914 * 1 2 3 30 30 H 1.09003 * 109.47475 * 59.99673 * 1 2 3 31 31 H 1.08995 * 109.47726 * 270.03075 * 6 5 4 32 32 H 1.09007 * 109.47193 * 30.03340 * 6 5 4 33 33 H 1.09005 * 109.47206 * 150.02689 * 6 5 4 34 34 H 1.08001 * 126.24028 * 179.97438 * 7 5 4 35 35 H 0.97004 * 120.00177 * 359.97438 * 11 9 8 36 36 H 1.08999 * 109.47402 * 59.99143 * 12 11 9 37 37 H 1.09000 * 109.46851 * 299.99234 * 12 11 9 38 38 H 1.08999 * 109.47456 * 59.99341 * 13 12 11 39 39 H 1.09008 * 109.47004 * 299.99588 * 13 12 11 40 40 H 1.09000 * 109.49448 * 52.78501 * 15 14 13 41 41 H 1.08995 * 109.49153 * 292.70371 * 15 14 13 42 42 H 1.08998 * 109.62846 * 173.53869 * 16 15 14 43 43 H 1.08997 * 109.62949 * 293.92586 * 16 15 14 44 44 H 0.97009 * 119.99909 * 179.97438 * 21 20 18 45 45 H 1.08995 * 109.62655 * 170.89395 * 26 17 16 46 46 H 1.08993 * 109.63223 * 291.48019 * 26 17 16 47 47 H 1.09001 * 109.49168 * 67.30395 * 27 14 13 48 48 H 1.08994 * 109.52148 * 307.23052 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2104 0.0000 4 7 1.4531 2.3766 0.0032 5 7 2.4282 3.3800 -0.0048 6 6 2.1705 4.8221 -0.0108 7 6 3.6385 2.8012 -0.0068 8 6 3.4452 1.4336 0.0005 9 6 4.4955 0.4015 0.0019 10 8 4.1911 -0.7760 0.0082 11 7 5.7942 0.7618 -0.0038 12 6 6.8392 -0.2650 -0.0030 13 6 8.2139 0.4065 -0.0108 14 7 9.2618 -0.6230 -0.0094 15 6 10.5831 -0.0297 -0.2548 16 6 11.6631 -1.1004 -0.0664 17 7 11.3313 -2.2534 -0.9173 18 6 12.2591 -2.7865 -1.7716 19 1 13.0560 -2.1682 -2.1576 20 6 12.1755 -4.1218 -2.1417 21 7 12.7791 -4.5412 -3.2335 22 14 11.2062 -5.3235 -1.0901 23 1 9.8083 -5.3989 -1.5853 24 1 11.8326 -6.6676 -1.1693 25 1 11.2072 -4.8593 0.3206 26 6 9.9763 -2.8183 -0.8263 27 6 8.9627 -1.6799 -0.9847 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 2.1025 5.1749 -1.0399 32 1 1.2324 5.0257 0.5058 33 1 2.9846 5.3389 0.4974 34 1 4.5903 3.3115 -0.0130 35 1 6.0370 1.7009 -0.0091 36 1 6.7354 -0.8898 -0.8900 37 1 6.7412 -0.8824 0.8899 38 1 8.3181 1.0317 0.8760 39 1 8.3118 1.0238 -0.9039 40 1 10.7523 0.7853 0.4490 41 1 10.6256 0.3545 -1.2739 42 1 12.6330 -0.6974 -0.3579 43 1 11.6940 -1.4095 0.9783 44 1 12.7209 -5.4744 -3.4919 45 1 9.8311 -3.5509 -1.6201 46 1 9.8427 -3.2949 0.1447 47 1 9.0279 -1.2728 -1.9937 48 1 7.9568 -2.0618 -0.8108 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752371030.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:00 Heat of formation + Delta-G solvation = 26.521965 kcal Electronic energy + Delta-G solvation = -28975.024064 eV Core-core repulsion = 24874.701681 eV Total energy + Delta-G solvation = -4100.322383 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.54461 -40.45431 -39.72944 -39.35687 -36.93912 -35.36442 -33.87775 -33.60314 -32.13165 -31.76249 -30.09791 -28.84894 -27.84549 -26.89931 -25.02947 -24.76754 -23.72128 -22.52695 -21.89463 -21.35217 -20.98029 -19.14394 -18.76338 -18.02132 -17.58518 -17.38331 -16.95635 -16.57482 -16.47976 -16.07800 -15.95617 -15.88931 -15.75785 -15.59414 -15.50630 -15.17912 -14.73963 -14.36991 -14.26667 -14.01054 -13.76450 -13.48623 -13.48342 -13.39504 -12.92910 -12.87614 -12.73507 -12.36890 -12.20395 -12.17760 -12.08833 -11.95228 -11.76797 -11.56451 -11.41556 -11.01809 -10.73113 -10.28768 -10.08113 -9.51487 -9.35000 -8.88914 -8.17506 -5.47913 0.47812 1.09258 1.26026 1.30307 1.40530 1.49950 2.05066 2.36972 2.41019 2.43670 3.00528 3.09815 3.37574 3.38858 3.76174 3.85555 4.10284 4.16851 4.19663 4.24300 4.27882 4.29491 4.32543 4.42463 4.48496 4.50070 4.52095 4.59044 4.59923 4.63188 4.71355 4.73852 4.79123 4.84866 4.93264 5.00772 5.03366 5.05448 5.33148 5.43977 5.83029 5.85707 6.06245 6.09687 6.13505 6.21573 6.46473 6.69902 6.89868 7.36872 7.61287 8.04444 9.02207 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019336 B = 0.002160 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.695735 B =12960.442381 C =14026.122465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.301 6.301 3 C 0.290 3.710 4 N -0.373 5.373 5 N -0.340 5.340 6 C 0.087 3.913 7 C 0.159 3.841 8 C -0.333 4.333 9 C 0.590 3.410 10 O -0.589 6.589 11 N -0.708 5.708 12 C 0.123 3.877 13 C 0.056 3.944 14 N -0.538 5.538 15 C 0.055 3.945 16 C 0.143 3.857 17 N -0.624 5.624 18 C -0.244 4.244 19 H 0.058 0.942 20 C -0.036 4.036 21 N -0.956 5.956 22 Si 0.943 3.057 23 H -0.278 1.278 24 H -0.310 1.310 25 H -0.264 1.264 26 C 0.124 3.876 27 C 0.047 3.953 28 H 0.118 0.882 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.134 0.866 34 H 0.247 0.753 35 H 0.417 0.583 36 H 0.050 0.950 37 H 0.060 0.940 38 H 0.110 0.890 39 H 0.052 0.948 40 H 0.110 0.890 41 H 0.027 0.973 42 H 0.065 0.935 43 H 0.036 0.964 44 H 0.261 0.739 45 H 0.049 0.951 46 H 0.032 0.968 47 H 0.027 0.973 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.634 26.631 9.776 36.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.204 6.204 3 C 0.085 3.915 4 N -0.214 5.214 5 N -0.120 5.120 6 C -0.051 4.051 7 C 0.004 3.996 8 C -0.348 4.348 9 C 0.379 3.621 10 O -0.470 6.470 11 N -0.361 5.361 12 C -0.002 4.002 13 C -0.072 4.072 14 N -0.264 5.264 15 C -0.074 4.074 16 C 0.018 3.982 17 N -0.349 5.349 18 C -0.374 4.374 19 H 0.075 0.925 20 C -0.230 4.230 21 N -0.603 5.603 22 Si 0.773 3.227 23 H -0.205 1.205 24 H -0.239 1.239 25 H -0.189 1.189 26 C -0.001 4.001 27 C -0.083 4.083 28 H 0.136 0.864 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.114 0.886 32 H 0.112 0.888 33 H 0.152 0.848 34 H 0.263 0.737 35 H 0.254 0.746 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.128 0.872 39 H 0.071 0.929 40 H 0.128 0.872 41 H 0.045 0.955 42 H 0.083 0.917 43 H 0.054 0.946 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.050 0.950 47 H 0.045 0.955 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -24.874 25.895 10.170 37.318 hybrid contribution 0.348 -1.088 -0.848 1.423 sum -24.526 24.807 9.322 36.108 Atomic orbital electron populations 1.23212 0.76033 1.05112 1.02319 1.86461 1.23777 1.21817 1.88388 1.20800 0.91037 0.85442 0.94227 1.77286 1.14616 0.94773 1.34715 1.48200 1.02831 1.07703 1.53308 1.22531 1.06410 0.70530 1.05669 1.23749 0.92929 0.90304 0.92576 1.19723 0.90764 0.94130 1.30223 1.17421 0.82349 0.87237 0.75083 1.90803 1.83086 1.20663 1.52443 1.45410 1.04068 1.10816 1.75838 1.21306 0.86389 0.90873 1.01607 1.22259 0.88268 0.93461 1.03178 1.61924 1.02732 1.12059 1.49681 1.22510 0.88068 0.96955 0.99842 1.21238 0.96762 0.86852 0.93339 1.44583 1.08138 1.36009 1.46172 1.18897 1.07548 0.92819 1.18130 0.92468 1.25846 1.00198 0.98594 0.98398 1.69955 1.49685 1.16418 1.24215 0.85979 0.77836 0.78045 0.80889 1.20485 1.23870 1.18870 1.21430 0.84816 0.95422 0.98448 1.22534 0.98841 0.93468 0.93441 0.86417 0.91938 0.92071 0.88589 0.88798 0.84815 0.73702 0.74559 0.93127 0.92125 0.87167 0.92935 0.87186 0.95495 0.91687 0.94563 0.92998 0.93249 0.94995 0.95520 0.89497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.70 113.37 1.21 1.72 16 2 O -0.30 -8.52 9.98 -86.73 -0.87 -9.38 16 3 C 0.29 7.33 7.85 85.70 0.67 8.00 16 4 N -0.37 -7.55 11.90 -169.99 -2.02 -9.57 16 5 N -0.34 -3.62 3.97 -367.79 -1.46 -5.09 16 6 C 0.09 -0.02 11.44 127.77 1.46 1.44 16 7 C 0.16 1.45 10.98 84.31 0.93 2.38 16 8 C -0.33 -7.07 6.14 -20.08 -0.12 -7.19 16 9 C 0.59 15.62 7.81 86.61 0.68 16.30 16 10 O -0.59 -22.40 16.43 1.02 0.02 -22.39 16 11 N -0.71 -12.86 5.54 -466.55 -2.59 -15.44 16 12 C 0.12 2.85 4.92 86.38 0.43 3.27 16 13 C 0.06 1.09 5.38 86.30 0.46 1.56 16 14 N -0.54 -15.59 4.78 -895.25 -4.28 -19.87 16 15 C 0.06 1.58 5.58 86.39 0.48 2.06 16 16 C 0.14 5.40 6.69 86.35 0.58 5.97 16 17 N -0.62 -30.08 2.82 -698.12 -1.97 -32.05 16 18 C -0.24 -14.11 10.08 84.03 0.85 -13.26 16 19 H 0.06 3.55 8.05 -2.91 -0.02 3.53 16 20 C -0.04 -2.14 5.24 84.86 0.44 -1.70 16 21 N -0.96 -61.35 13.97 21.65 0.30 -61.05 16 22 Si 0.94 48.75 24.31 68.60 1.67 50.42 16 23 H -0.28 -13.78 6.58 99.48 0.65 -13.13 16 24 H -0.31 -16.17 7.11 99.48 0.71 -15.46 16 25 H -0.26 -13.25 6.61 99.48 0.66 -12.59 16 26 C 0.12 5.57 4.35 86.35 0.38 5.94 16 27 C 0.05 1.66 5.04 86.39 0.44 2.10 16 28 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.10 -0.22 8.14 -2.39 -0.02 -0.24 16 32 H 0.09 0.04 8.14 -2.38 -0.02 0.02 16 33 H 0.13 -1.01 8.14 -2.38 -0.02 -1.03 16 34 H 0.25 -0.90 7.46 -2.91 -0.02 -0.92 16 35 H 0.42 3.36 7.39 -92.71 -0.69 2.68 16 36 H 0.05 1.43 6.18 -2.39 -0.01 1.42 16 37 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.05 0.91 8.08 -2.38 -0.02 0.89 16 40 H 0.11 2.29 8.11 -2.39 -0.02 2.27 16 41 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.06 2.42 7.95 -2.39 -0.02 2.40 16 43 H 0.04 1.34 8.14 -2.39 -0.02 1.33 16 44 H 0.26 15.97 8.31 -92.70 -0.77 15.20 16 45 H 0.05 2.45 4.60 -2.39 -0.01 2.44 16 46 H 0.03 1.45 6.94 -2.39 -0.02 1.43 16 47 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 48 H 0.09 2.89 5.73 -2.39 -0.01 2.87 16 Total: -1.00 -92.07 384.58 -2.13 -94.20 By element: Atomic # 1 Polarization: 1.45 SS G_CDS: 0.19 Total: 1.64 kcal Atomic # 6 Polarization: 19.71 SS G_CDS: 8.88 Total: 28.58 kcal Atomic # 7 Polarization: -131.05 SS G_CDS: -12.02 Total: -143.07 kcal Atomic # 8 Polarization: -30.92 SS G_CDS: -0.85 Total: -31.77 kcal Atomic # 14 Polarization: 48.75 SS G_CDS: 1.67 Total: 50.42 kcal Total: -92.07 -2.13 -94.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752371030.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.721 kcal (2) G-P(sol) polarization free energy of solvation -92.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds