Wall clock time and date at job start Tue Mar 31 2020 21:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.37360 * 125.83283 * 2 1 4 4 N 1.29398 * 108.83085 * 179.73122 * 3 2 1 5 5 N 1.40173 * 108.13858 * 0.37773 * 4 3 2 6 6 C 1.46499 * 126.35099 * 179.87822 * 5 4 3 7 7 C 1.52990 * 109.47308 * 269.69419 * 6 5 4 8 8 C 1.50703 * 109.47398 * 179.97438 * 7 6 5 9 9 O 1.21283 * 119.99488 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00290 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99828 * 180.27728 * 10 8 7 12 12 H 1.08995 * 109.47013 * 324.72129 * 11 10 8 13 13 C 1.52999 * 109.47257 * 84.72116 * 11 10 8 14 14 C 1.53003 * 109.47010 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47127 * 300.00125 * 14 13 11 16 16 C 1.52999 * 109.47278 * 60.00039 * 15 14 13 17 17 H 1.09003 * 109.46809 * 59.99699 * 16 15 14 18 18 N 1.46507 * 109.47118 * 179.97438 * 16 15 14 19 19 C 1.36939 * 119.99664 * 275.00048 * 18 16 15 20 20 H 1.07997 * 120.00169 * 359.97438 * 19 18 16 21 21 C 1.38812 * 119.99521 * 180.02562 * 19 18 16 22 22 N 1.31626 * 120.00298 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00000 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47457 * 89.99461 * 23 21 19 25 25 H 1.48500 * 109.47220 * 209.99715 * 23 21 19 26 26 H 1.48500 * 109.47026 * 329.99487 * 23 21 19 27 27 C 1.52994 * 109.47024 * 299.99839 * 16 15 14 28 28 C 1.34817 * 125.83449 * 179.97438 * 2 1 3 29 29 O 1.21814 * 126.29824 * 0.02562 * 28 2 1 30 30 H 1.09003 * 109.47166 * 270.03129 * 1 2 3 31 31 H 1.08995 * 109.47076 * 30.03071 * 1 2 3 32 32 H 1.09000 * 109.46765 * 150.02923 * 1 2 3 33 33 H 1.08004 * 125.57921 * 359.97096 * 3 2 1 34 34 H 1.08998 * 109.47134 * 149.68824 * 6 5 4 35 35 H 1.09011 * 109.46711 * 29.69354 * 6 5 4 36 36 H 1.08998 * 109.47508 * 59.99635 * 7 6 5 37 37 H 1.09002 * 109.47337 * 299.99921 * 7 6 5 38 38 H 0.97001 * 119.99727 * 359.97438 * 10 8 7 39 39 H 1.08996 * 109.47245 * 299.99926 * 13 11 10 40 40 H 1.08995 * 109.47098 * 60.00065 * 13 11 10 41 41 H 1.08996 * 109.47077 * 179.97438 * 14 13 11 42 42 H 1.09003 * 109.47062 * 60.00488 * 14 13 11 43 43 H 1.08995 * 109.47275 * 299.99879 * 15 14 13 44 44 H 1.09003 * 109.47146 * 180.02562 * 15 14 13 45 45 H 0.96998 * 119.99800 * 94.99815 * 18 16 15 46 46 H 0.96991 * 120.00506 * 180.02562 * 22 21 19 47 47 H 1.08994 * 109.47599 * 300.00048 * 27 16 15 48 48 H 1.08998 * 109.47530 * 179.97438 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2692 1.1136 0.0000 4 7 3.5066 0.7353 0.0057 5 7 3.5344 -0.6662 0.0009 6 6 4.7313 -1.5109 0.0023 7 6 5.1488 -1.8062 -1.4397 8 6 6.3804 -2.6747 -1.4383 9 8 6.8757 -3.0227 -0.3874 10 7 6.9320 -3.0638 -2.6049 11 6 8.1257 -3.9130 -2.6034 12 1 8.7640 -3.6411 -1.7628 13 6 7.7083 -5.3793 -2.4736 14 6 8.9551 -6.2662 -2.4727 15 6 9.7226 -6.0684 -3.7814 16 6 10.1399 -4.6021 -3.9112 17 1 10.7786 -4.3304 -3.0707 18 7 10.8754 -4.4129 -5.1641 19 6 12.2208 -4.6637 -5.2128 20 1 12.7397 -5.0006 -4.3276 21 6 12.9177 -4.4838 -6.3997 22 7 12.2854 -4.0727 -7.4784 23 14 14.7527 -4.8266 -6.4665 24 1 14.9779 -6.2464 -6.8388 25 1 15.3848 -3.9432 -7.4790 26 1 15.3544 -4.5627 -5.1347 27 6 8.8933 -3.7152 -3.9121 28 6 2.2543 -1.0930 0.0005 29 8 1.8806 -2.2524 0.0006 30 1 -0.3634 0.0006 1.0277 31 1 -0.3633 0.8897 -0.5143 32 1 -0.3633 -0.8903 -0.5134 33 1 1.9249 2.1373 -0.0004 34 1 4.5148 -2.4471 0.5169 35 1 5.5411 -0.9928 0.5161 36 1 5.3654 -0.8701 -1.9542 37 1 4.3390 -2.3243 -1.9535 38 1 6.5360 -2.7851 -3.4453 39 1 7.1612 -5.5201 -1.5415 40 1 7.0701 -5.6511 -3.3142 41 1 8.6578 -7.3107 -2.3797 42 1 9.5937 -5.9945 -1.6322 43 1 9.0840 -6.3401 -4.6218 44 1 10.6105 -6.7006 -3.7810 45 1 10.4094 -4.1099 -5.9590 46 1 12.7722 -3.9474 -8.3079 47 1 8.2546 -3.9870 -4.7525 48 1 9.1905 -2.6706 -4.0042 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752974387.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:42 Heat of formation + Delta-G solvation = 7.503791 kcal Electronic energy + Delta-G solvation = -28602.316876 eV Core-core repulsion = 24501.169804 eV Total energy + Delta-G solvation = -4101.147073 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.78923 -40.06694 -38.05798 -37.59719 -36.03754 -34.68728 -33.39772 -33.07188 -31.12835 -30.49284 -29.17012 -27.95048 -27.64370 -25.11745 -23.72111 -22.83042 -22.01549 -21.59201 -21.07657 -20.31133 -19.37448 -18.14352 -17.39646 -17.09476 -16.76709 -16.46183 -16.18180 -15.94514 -15.49833 -14.99772 -14.69672 -14.38606 -14.22385 -13.97709 -13.69233 -13.59594 -13.31200 -13.27611 -13.10103 -13.06135 -12.67487 -12.59762 -12.27934 -12.12190 -12.05262 -11.57561 -10.99246 -10.93490 -10.86779 -10.71330 -10.61274 -10.54034 -10.34216 -10.28645 -10.16748 -10.07143 -9.70488 -9.57748 -8.99190 -8.94812 -8.85675 -6.95738 -5.76545 -3.05104 1.35162 1.53968 2.29555 2.55438 2.67230 3.18967 3.44151 3.49643 3.50946 4.00929 4.28987 4.46050 4.52148 4.58547 4.68974 4.70517 4.82376 4.98305 5.00288 5.09810 5.14838 5.30261 5.34424 5.44717 5.51189 5.55010 5.61735 5.70124 5.76205 5.81099 5.89012 5.98514 6.03965 6.12252 6.15705 6.31787 6.34216 6.53232 6.54334 6.63655 6.74071 6.97699 7.13404 7.21930 7.46527 7.66763 7.71416 8.15432 8.42220 9.53390 10.10709 10.45521 11.46192 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.024719 B = 0.001789 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.442794 B =15651.203374 C =16182.155587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.564 5.564 3 C 0.252 3.748 4 N -0.279 5.279 5 N -0.451 5.451 6 C 0.177 3.823 7 C -0.161 4.161 8 C 0.521 3.479 9 O -0.542 6.542 10 N -0.721 5.721 11 C 0.148 3.852 12 H 0.088 0.912 13 C -0.124 4.124 14 C -0.114 4.114 15 C -0.137 4.137 16 C 0.183 3.817 17 H 0.049 0.951 18 N -0.724 5.724 19 C -0.237 4.237 20 H 0.071 0.929 21 C -0.015 4.015 22 N -0.934 5.934 23 Si 0.906 3.094 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 C -0.129 4.129 28 C 0.641 3.359 29 O -0.552 6.552 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.231 0.769 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.400 0.600 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.056 0.944 42 H 0.060 0.940 43 H 0.054 0.946 44 H 0.062 0.938 45 H 0.383 0.617 46 H 0.255 0.745 47 H 0.064 0.936 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.964 11.146 14.434 31.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.293 5.293 3 C -0.047 4.047 4 N -0.100 5.100 5 N -0.272 5.272 6 C 0.056 3.944 7 C -0.202 4.202 8 C 0.306 3.694 9 O -0.419 6.419 10 N -0.371 5.371 11 C 0.044 3.956 12 H 0.106 0.894 13 C -0.163 4.163 14 C -0.153 4.153 15 C -0.177 4.177 16 C 0.073 3.927 17 H 0.067 0.933 18 N -0.365 5.365 19 C -0.368 4.368 20 H 0.089 0.911 21 C -0.210 4.210 22 N -0.583 5.583 23 Si 0.737 3.263 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.168 4.168 28 C 0.341 3.659 29 O -0.425 6.425 30 H 0.092 0.908 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.247 0.753 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.116 0.884 38 H 0.234 0.766 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.073 0.927 44 H 0.081 0.919 45 H 0.216 0.784 46 H 0.064 0.936 47 H 0.083 0.917 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -24.634 10.288 15.221 30.730 hybrid contribution -0.196 -0.081 -0.979 1.001 sum -24.830 10.207 14.242 30.390 Atomic orbital electron populations 1.21831 0.74146 1.04799 1.03590 1.45969 1.08956 1.06722 1.67642 1.25966 0.85842 0.94780 0.98149 1.77045 1.18146 0.92031 1.22730 1.49050 1.06242 1.03102 1.68772 1.21195 0.83304 0.93683 0.96189 1.22048 0.97328 1.01507 0.99336 1.20220 0.84754 0.80276 0.84144 1.90726 1.63327 1.56833 1.31055 1.46160 1.30408 1.52267 1.08292 1.21054 0.85349 0.89449 0.99744 0.89352 1.21883 0.98404 0.94434 1.01567 1.21484 0.96187 0.98505 0.99150 1.22288 0.99533 1.00393 0.95493 1.20101 0.90440 0.91299 0.90894 0.93340 1.42401 1.06216 1.80445 1.07392 1.19255 0.84635 1.37301 0.95612 0.91125 1.24737 0.98051 1.02351 0.95892 1.69658 1.35035 1.52986 1.00580 0.86198 0.85374 0.77563 0.77126 1.21758 1.21824 1.20751 1.22088 0.97885 1.01418 0.95409 1.16825 0.82184 0.85146 0.81760 1.91110 1.77690 1.15184 1.58494 0.90848 0.89257 0.89359 0.75285 0.87762 0.87662 0.88008 0.88412 0.76610 0.92139 0.92092 0.92510 0.92160 0.92689 0.91893 0.78352 0.93565 0.91728 0.91304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.27 11.05 59.85 0.66 0.93 16 2 N -0.56 -3.70 3.14 -130.10 -0.41 -4.11 16 3 C 0.25 1.19 12.66 -89.12 -1.13 0.06 16 4 N -0.28 -2.34 12.53 29.87 0.37 -1.96 16 5 N -0.45 -4.61 3.63 -65.13 -0.24 -4.84 16 6 C 0.18 1.81 5.68 -4.05 -0.02 1.79 16 7 C -0.16 -1.50 6.02 -27.89 -0.17 -1.67 16 8 C 0.52 6.35 7.79 -10.98 -0.09 6.27 16 9 O -0.54 -8.48 15.65 5.55 0.09 -8.39 16 10 N -0.72 -8.35 5.08 -53.81 -0.27 -8.63 16 11 C 0.15 2.07 2.45 -67.93 -0.17 1.91 16 12 H 0.09 1.39 7.58 -51.93 -0.39 1.00 16 13 C -0.12 -1.71 5.49 -26.73 -0.15 -1.86 16 14 C -0.11 -1.68 5.92 -26.73 -0.16 -1.83 16 15 C -0.14 -2.42 5.50 -26.73 -0.15 -2.57 16 16 C 0.18 3.56 2.77 -67.93 -0.19 3.38 16 17 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 18 N -0.72 -17.85 5.12 -53.42 -0.27 -18.13 16 19 C -0.24 -6.54 9.93 -15.06 -0.15 -6.69 16 20 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 21 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 22 N -0.93 -28.06 13.06 55.49 0.72 -27.33 16 23 Si 0.91 22.43 29.55 -169.99 -5.02 17.41 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 27 C -0.13 -2.04 4.86 -26.73 -0.13 -2.17 16 28 C 0.64 7.07 8.60 -86.74 -0.75 6.32 16 29 O -0.55 -8.01 17.71 5.09 0.09 -7.92 16 30 H 0.07 0.14 8.14 -51.93 -0.42 -0.28 16 31 H 0.09 -0.05 8.14 -51.93 -0.42 -0.47 16 32 H 0.09 0.35 8.08 -51.93 -0.42 -0.07 16 33 H 0.23 -0.18 8.06 -52.48 -0.42 -0.61 16 34 H 0.10 1.18 8.07 -51.93 -0.42 0.76 16 35 H 0.11 1.06 8.10 -51.92 -0.42 0.64 16 36 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.40 3.68 8.60 -40.82 -0.35 3.33 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.38 9.99 7.80 -40.82 -0.32 9.67 16 46 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 47 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 48 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 399.22 15.07 6.02 6.02 Total: -1.00 -36.99 399.22 -9.38 -46.36 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -7.78 Total: 8.18 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: -2.67 Total: 3.36 kcal Atomic # 7 Polarization: -64.91 SS G_CDS: -0.09 Total: -65.00 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: 0.18 Total: -16.32 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.99 -9.38 -46.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752974387.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.867 kcal (2) G-P(sol) polarization free energy of solvation -36.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds