Wall clock time and date at job start Tue Mar 31 2020 21:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.37360 * 125.83283 * 2 1 4 4 N 1.29398 * 108.83085 * 179.73122 * 3 2 1 5 5 N 1.40173 * 108.13858 * 0.37773 * 4 3 2 6 6 C 1.46499 * 126.35099 * 179.87822 * 5 4 3 7 7 C 1.52990 * 109.47308 * 269.69419 * 6 5 4 8 8 C 1.50703 * 109.47398 * 179.97438 * 7 6 5 9 9 O 1.21283 * 119.99488 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00290 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99828 * 180.27728 * 10 8 7 12 12 H 1.08995 * 109.47013 * 324.72129 * 11 10 8 13 13 C 1.52999 * 109.47257 * 84.72116 * 11 10 8 14 14 C 1.53003 * 109.47010 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47127 * 300.00125 * 14 13 11 16 16 C 1.52999 * 109.47278 * 60.00039 * 15 14 13 17 17 H 1.09003 * 109.46809 * 59.99699 * 16 15 14 18 18 N 1.46507 * 109.47118 * 179.97438 * 16 15 14 19 19 C 1.36939 * 119.99664 * 275.00048 * 18 16 15 20 20 H 1.07997 * 120.00169 * 359.97438 * 19 18 16 21 21 C 1.38812 * 119.99521 * 180.02562 * 19 18 16 22 22 N 1.31626 * 120.00298 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00000 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47457 * 89.99461 * 23 21 19 25 25 H 1.48500 * 109.47220 * 209.99715 * 23 21 19 26 26 H 1.48500 * 109.47026 * 329.99487 * 23 21 19 27 27 C 1.52994 * 109.47024 * 299.99839 * 16 15 14 28 28 C 1.34817 * 125.83449 * 179.97438 * 2 1 3 29 29 O 1.21814 * 126.29824 * 0.02562 * 28 2 1 30 30 H 1.09003 * 109.47166 * 270.03129 * 1 2 3 31 31 H 1.08995 * 109.47076 * 30.03071 * 1 2 3 32 32 H 1.09000 * 109.46765 * 150.02923 * 1 2 3 33 33 H 1.08004 * 125.57921 * 359.97096 * 3 2 1 34 34 H 1.08998 * 109.47134 * 149.68824 * 6 5 4 35 35 H 1.09011 * 109.46711 * 29.69354 * 6 5 4 36 36 H 1.08998 * 109.47508 * 59.99635 * 7 6 5 37 37 H 1.09002 * 109.47337 * 299.99921 * 7 6 5 38 38 H 0.97001 * 119.99727 * 359.97438 * 10 8 7 39 39 H 1.08996 * 109.47245 * 299.99926 * 13 11 10 40 40 H 1.08995 * 109.47098 * 60.00065 * 13 11 10 41 41 H 1.08996 * 109.47077 * 179.97438 * 14 13 11 42 42 H 1.09003 * 109.47062 * 60.00488 * 14 13 11 43 43 H 1.08995 * 109.47275 * 299.99879 * 15 14 13 44 44 H 1.09003 * 109.47146 * 180.02562 * 15 14 13 45 45 H 0.96998 * 119.99800 * 94.99815 * 18 16 15 46 46 H 0.96991 * 120.00506 * 180.02562 * 22 21 19 47 47 H 1.08994 * 109.47599 * 300.00048 * 27 16 15 48 48 H 1.08998 * 109.47530 * 179.97438 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2692 1.1136 0.0000 4 7 3.5066 0.7353 0.0057 5 7 3.5344 -0.6662 0.0009 6 6 4.7313 -1.5109 0.0023 7 6 5.1488 -1.8062 -1.4397 8 6 6.3804 -2.6747 -1.4383 9 8 6.8757 -3.0227 -0.3874 10 7 6.9320 -3.0638 -2.6049 11 6 8.1257 -3.9130 -2.6034 12 1 8.7640 -3.6411 -1.7628 13 6 7.7083 -5.3793 -2.4736 14 6 8.9551 -6.2662 -2.4727 15 6 9.7226 -6.0684 -3.7814 16 6 10.1399 -4.6021 -3.9112 17 1 10.7786 -4.3304 -3.0707 18 7 10.8754 -4.4129 -5.1641 19 6 12.2208 -4.6637 -5.2128 20 1 12.7397 -5.0006 -4.3276 21 6 12.9177 -4.4838 -6.3997 22 7 12.2854 -4.0727 -7.4784 23 14 14.7527 -4.8266 -6.4665 24 1 14.9779 -6.2464 -6.8388 25 1 15.3848 -3.9432 -7.4790 26 1 15.3544 -4.5627 -5.1347 27 6 8.8933 -3.7152 -3.9121 28 6 2.2543 -1.0930 0.0005 29 8 1.8806 -2.2524 0.0006 30 1 -0.3634 0.0006 1.0277 31 1 -0.3633 0.8897 -0.5143 32 1 -0.3633 -0.8903 -0.5134 33 1 1.9249 2.1373 -0.0004 34 1 4.5148 -2.4471 0.5169 35 1 5.5411 -0.9928 0.5161 36 1 5.3654 -0.8701 -1.9542 37 1 4.3390 -2.3243 -1.9535 38 1 6.5360 -2.7851 -3.4453 39 1 7.1612 -5.5201 -1.5415 40 1 7.0701 -5.6511 -3.3142 41 1 8.6578 -7.3107 -2.3797 42 1 9.5937 -5.9945 -1.6322 43 1 9.0840 -6.3401 -4.6218 44 1 10.6105 -6.7006 -3.7810 45 1 10.4094 -4.1099 -5.9590 46 1 12.7722 -3.9474 -8.3079 47 1 8.2546 -3.9870 -4.7525 48 1 9.1905 -2.6706 -4.0042 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752974387.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:40 Heat of formation + Delta-G solvation = -17.870683 kcal Electronic energy + Delta-G solvation = -28603.417196 eV Core-core repulsion = 24501.169804 eV Total energy + Delta-G solvation = -4102.247392 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.39698 -41.15487 -39.37420 -38.41387 -36.72182 -36.20549 -34.84079 -33.79973 -32.93169 -31.36431 -30.34895 -29.36472 -28.24802 -25.91671 -25.63105 -23.53919 -23.18960 -22.64520 -22.02722 -21.40555 -20.76366 -19.21358 -18.77702 -17.98963 -17.65051 -17.41265 -17.11298 -16.70512 -16.45637 -16.32744 -15.92190 -15.56146 -15.28561 -15.15566 -15.10104 -14.77681 -14.50846 -14.30760 -14.10313 -13.88768 -13.54178 -13.49299 -13.40933 -13.20294 -12.91752 -12.87123 -12.80708 -12.38919 -12.27555 -12.16249 -12.04025 -11.97544 -11.65239 -11.51605 -11.38906 -11.37717 -11.11951 -10.88182 -10.79570 -10.06991 -9.65795 -8.99782 -7.93860 -5.21653 0.73277 1.09830 1.47486 1.48420 1.55260 1.56730 1.56967 2.07181 2.34792 2.57015 3.39351 3.45798 3.60220 3.65296 3.83113 3.86142 3.99591 4.04771 4.12793 4.26274 4.29163 4.30835 4.34625 4.45155 4.52969 4.54405 4.57451 4.66074 4.67668 4.71140 4.76029 4.83226 4.96318 5.02364 5.10886 5.12042 5.16611 5.21645 5.34785 5.46771 5.50233 5.53511 5.65297 5.70178 6.28896 6.51163 6.64055 6.94186 7.19343 7.35184 8.10866 8.34757 9.29459 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.024719 B = 0.001789 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.442794 B =15651.203374 C =16182.155587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.559 5.559 3 C 0.280 3.720 4 N -0.316 5.316 5 N -0.457 5.457 6 C 0.179 3.821 7 C -0.143 4.143 8 C 0.522 3.478 9 O -0.578 6.578 10 N -0.712 5.712 11 C 0.158 3.842 12 H 0.071 0.929 13 C -0.117 4.117 14 C -0.106 4.106 15 C -0.126 4.126 16 C 0.176 3.824 17 H 0.037 0.963 18 N -0.735 5.735 19 C -0.238 4.238 20 H 0.072 0.928 21 C -0.075 4.075 22 N -0.968 5.968 23 Si 0.969 3.031 24 H -0.288 1.288 25 H -0.295 1.295 26 H -0.272 1.272 27 C -0.114 4.114 28 C 0.624 3.376 29 O -0.600 6.600 30 H 0.083 0.917 31 H 0.132 0.868 32 H 0.071 0.929 33 H 0.289 0.711 34 H 0.085 0.915 35 H 0.103 0.897 36 H 0.120 0.880 37 H 0.105 0.895 38 H 0.414 0.586 39 H 0.060 0.940 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.059 0.941 43 H 0.052 0.948 44 H 0.041 0.959 45 H 0.374 0.626 46 H 0.250 0.750 47 H 0.074 0.926 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.722 12.742 14.957 33.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.286 5.286 3 C -0.018 4.018 4 N -0.137 5.137 5 N -0.277 5.277 6 C 0.057 3.943 7 C -0.184 4.184 8 C 0.309 3.691 9 O -0.458 6.458 10 N -0.363 5.363 11 C 0.053 3.947 12 H 0.089 0.911 13 C -0.156 4.156 14 C -0.145 4.145 15 C -0.167 4.167 16 C 0.068 3.932 17 H 0.055 0.945 18 N -0.375 5.375 19 C -0.370 4.370 20 H 0.090 0.910 21 C -0.267 4.267 22 N -0.619 5.619 23 Si 0.799 3.201 24 H -0.215 1.215 25 H -0.222 1.222 26 H -0.197 1.197 27 C -0.153 4.153 28 C 0.323 3.677 29 O -0.477 6.477 30 H 0.102 0.898 31 H 0.151 0.849 32 H 0.090 0.910 33 H 0.304 0.696 34 H 0.103 0.897 35 H 0.121 0.879 36 H 0.138 0.862 37 H 0.123 0.877 38 H 0.251 0.749 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.060 0.940 45 H 0.206 0.794 46 H 0.059 0.941 47 H 0.093 0.907 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -26.439 11.922 15.772 33.013 hybrid contribution 0.244 -0.498 -1.061 1.197 sum -26.194 11.424 14.711 32.141 Atomic orbital electron populations 1.22171 0.71851 1.06121 1.04765 1.46191 1.10208 1.05971 1.66241 1.27152 0.84402 0.96113 0.94107 1.77078 1.20346 0.90467 1.25842 1.49023 1.05808 1.04178 1.68685 1.21031 0.83570 0.93165 0.96525 1.21907 0.95830 1.01624 0.99061 1.20646 0.85090 0.79898 0.83480 1.90715 1.64504 1.58203 1.32369 1.45993 1.29536 1.51714 1.09052 1.20759 0.85890 0.90220 0.97812 0.91082 1.21818 0.97965 0.93748 1.02061 1.21411 0.96144 0.99904 0.97052 1.22095 0.99005 0.98304 0.97258 1.20314 0.91406 0.93229 0.88295 0.94518 1.42568 1.05705 1.80483 1.08725 1.19595 0.86086 1.35784 0.95504 0.90968 1.25499 1.02158 1.03279 0.95795 1.69801 1.36393 1.54801 1.00915 0.85199 0.80605 0.77104 0.77230 1.21536 1.22184 1.19668 1.21868 0.96513 1.00111 0.96818 1.17154 0.82914 0.85539 0.82088 1.91055 1.78546 1.17334 1.60788 0.89794 0.84946 0.91019 0.69621 0.89652 0.87895 0.86173 0.87721 0.74905 0.92077 0.90933 0.90723 0.92271 0.92888 0.93995 0.79442 0.94088 0.90722 0.91897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.27 11.05 127.77 1.41 1.68 16 2 N -0.56 -6.14 3.14 -683.68 -2.15 -8.28 16 3 C 0.28 1.68 12.66 179.82 2.28 3.96 16 4 N -0.32 -4.70 12.53 -59.41 -0.74 -5.44 16 5 N -0.46 -9.14 3.63 -478.03 -1.73 -10.88 16 6 C 0.18 3.71 5.68 86.38 0.49 4.20 16 7 C -0.14 -2.56 6.02 29.85 0.18 -2.38 16 8 C 0.52 12.39 7.79 87.66 0.68 13.07 16 9 O -0.58 -18.17 15.65 -3.04 -0.05 -18.22 16 10 N -0.71 -15.57 5.08 -442.53 -2.25 -17.82 16 11 C 0.16 4.29 2.45 44.99 0.11 4.40 16 12 H 0.07 2.22 7.58 -2.39 -0.02 2.20 16 13 C -0.12 -3.05 5.49 30.60 0.17 -2.89 16 14 C -0.11 -2.99 5.92 30.59 0.18 -2.81 16 15 C -0.13 -4.44 5.50 30.59 0.17 -4.27 16 16 C 0.18 6.88 2.77 44.99 0.12 7.01 16 17 H 0.04 1.52 8.08 -2.39 -0.02 1.50 16 18 N -0.74 -36.70 5.12 -322.93 -1.65 -38.35 16 19 C -0.24 -13.24 9.93 84.03 0.83 -12.40 16 20 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 21 C -0.08 -4.32 5.50 84.86 0.47 -3.85 16 22 N -0.97 -59.00 13.06 21.65 0.28 -58.71 16 23 Si 0.97 46.47 29.55 68.60 2.03 48.50 16 24 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 25 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 26 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 27 C -0.11 -3.53 4.86 30.59 0.15 -3.38 16 28 C 0.62 13.58 8.60 178.99 1.54 15.12 16 29 O -0.60 -18.02 17.71 -4.71 -0.08 -18.10 16 30 H 0.08 0.11 8.14 -2.39 -0.02 0.09 16 31 H 0.13 -0.74 8.14 -2.39 -0.02 -0.76 16 32 H 0.07 0.50 8.08 -2.39 -0.02 0.48 16 33 H 0.29 -2.11 8.06 -2.91 -0.02 -2.14 16 34 H 0.09 2.06 8.07 -2.39 -0.02 2.04 16 35 H 0.10 2.13 8.10 -2.38 -0.02 2.11 16 36 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.41 6.81 8.60 -92.71 -0.80 6.01 16 39 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.06 1.68 8.14 -2.39 -0.02 1.67 16 43 H 0.05 1.87 8.14 -2.39 -0.02 1.86 16 44 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.37 19.81 7.80 -92.71 -0.72 19.09 16 46 H 0.25 14.82 8.31 -92.72 -0.77 14.05 16 47 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 48 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -83.35 399.22 1.89 -81.46 By element: Atomic # 1 Polarization: 28.93 SS G_CDS: -0.55 Total: 28.39 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: 8.78 Total: 17.46 kcal Atomic # 7 Polarization: -131.24 SS G_CDS: -8.24 Total: -139.49 kcal Atomic # 8 Polarization: -36.19 SS G_CDS: -0.13 Total: -36.32 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.50 kcal Total: -83.35 1.89 -81.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752974387.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.592 kcal (2) G-P(sol) polarization free energy of solvation -83.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds