Wall clock time and date at job start Tue Mar 31 2020 21:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.37358 * 125.83353 * 2 1 4 4 N 1.29398 * 108.82822 * 179.87966 * 3 2 1 5 5 N 1.40164 * 108.14079 * 0.38367 * 4 3 2 6 6 C 1.46500 * 126.35080 * 179.75963 * 5 4 3 7 7 C 1.53000 * 109.47297 * 270.00001 * 6 5 4 8 8 C 1.50694 * 109.47493 * 179.97438 * 7 6 5 9 9 O 1.21287 * 119.99916 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00346 * 179.97438 * 8 7 6 11 11 C 1.46495 * 120.00154 * 179.97438 * 10 8 7 12 12 H 1.08996 * 109.47180 * 35.00591 * 11 10 8 13 13 C 1.53002 * 109.47534 * 275.00160 * 11 10 8 14 14 C 1.52997 * 109.47351 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.47120 * 60.00090 * 14 13 11 16 16 C 1.53002 * 109.46936 * 300.00164 * 15 14 13 17 17 H 1.09003 * 109.47045 * 299.99955 * 16 15 14 18 18 N 1.46499 * 109.47008 * 180.02562 * 16 15 14 19 19 C 1.36936 * 120.00399 * 84.99545 * 18 16 15 20 20 H 1.08006 * 119.99725 * 0.02562 * 19 18 16 21 21 C 1.38817 * 120.00574 * 180.02562 * 19 18 16 22 22 N 1.31618 * 119.99348 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00334 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47034 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47153 * 119.99792 * 23 21 19 26 26 H 1.48493 * 109.47165 * 240.00129 * 23 21 19 27 27 C 1.52997 * 109.47351 * 59.99977 * 16 15 14 28 28 C 1.34811 * 125.83127 * 180.31410 * 2 1 3 29 29 O 1.21822 * 126.30255 * 359.92645 * 28 2 1 30 30 H 1.08999 * 109.46892 * 269.68897 * 1 2 3 31 31 H 1.09000 * 109.46803 * 29.68070 * 1 2 3 32 32 H 1.09000 * 109.47214 * 149.68863 * 1 2 3 33 33 H 1.07997 * 125.58660 * 0.04619 * 3 2 1 34 34 H 1.08996 * 109.47326 * 29.99810 * 6 5 4 35 35 H 1.09003 * 109.47534 * 150.00061 * 6 5 4 36 36 H 1.09001 * 109.47213 * 300.00303 * 7 6 5 37 37 H 1.09003 * 109.46779 * 59.99598 * 7 6 5 38 38 H 0.97006 * 119.99968 * 0.02562 * 10 8 7 39 39 H 1.09003 * 109.47045 * 300.00101 * 13 11 10 40 40 H 1.08998 * 109.46651 * 59.99783 * 13 11 10 41 41 H 1.08996 * 109.47207 * 300.00335 * 14 13 11 42 42 H 1.08997 * 109.47439 * 180.02562 * 14 13 11 43 43 H 1.09002 * 109.47360 * 180.02562 * 15 14 13 44 44 H 1.08996 * 109.46880 * 60.00045 * 15 14 13 45 45 H 0.97005 * 119.99935 * 265.00122 * 18 16 15 46 46 H 0.97004 * 119.99616 * 179.97438 * 22 21 19 47 47 H 1.09003 * 109.47015 * 179.97438 * 27 16 15 48 48 H 1.09003 * 109.47064 * 59.99989 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2692 1.1136 0.0000 4 7 3.5066 0.7352 0.0026 5 7 3.5344 -0.6662 -0.0046 6 6 4.7313 -1.5110 -0.0095 7 6 5.1472 -1.7977 -1.4537 8 6 6.3788 -2.6661 -1.4588 9 8 6.8753 -3.0205 -0.4105 10 7 6.9285 -3.0491 -2.6283 11 6 8.1260 -3.8929 -2.6332 12 1 8.0844 -4.5878 -1.7945 13 6 9.3708 -3.0126 -2.5048 14 6 10.6215 -3.8938 -2.5106 15 6 10.6857 -4.6796 -3.8219 16 6 9.4409 -5.5599 -3.9503 17 1 9.3995 -6.2551 -3.1117 18 7 9.5026 -6.3128 -5.2055 19 6 10.1859 -7.4982 -5.2601 20 1 10.6791 -7.8784 -4.3776 21 6 10.2449 -8.2113 -6.4496 22 7 9.6443 -7.7478 -7.5252 23 14 11.1764 -9.8287 -6.5238 24 1 11.7572 -10.1271 -5.1901 25 1 10.2457 -10.9186 -6.9129 26 1 12.2662 -9.7267 -7.5273 27 6 8.1902 -4.6787 -3.9445 28 6 2.2542 -1.0930 -0.0060 29 8 1.8805 -2.2524 -0.0111 30 1 -0.3633 -0.0056 1.0277 31 1 -0.3633 0.8929 -0.5089 32 1 -0.3633 -0.8872 -0.5187 33 1 1.9251 2.1373 0.0007 34 1 5.5416 -0.9960 0.5065 35 1 4.5153 -2.4502 0.4996 36 1 4.3369 -2.3127 -1.9698 37 1 5.3633 -0.8584 -1.9629 38 1 6.5316 -2.7655 -3.4667 39 1 9.4125 -2.3177 -3.3436 40 1 9.3249 -2.4524 -1.5709 41 1 10.5801 -4.5890 -1.6721 42 1 11.5083 -3.2667 -2.4187 43 1 11.5765 -5.3078 -3.8259 44 1 10.7272 -3.9844 -4.6603 45 1 9.0595 -5.9715 -5.9981 46 1 9.6858 -8.2459 -8.3565 47 1 7.3034 -5.3059 -4.0364 48 1 8.2317 -3.9835 -4.7830 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752974388.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:48 Heat of formation + Delta-G solvation = 7.492730 kcal Electronic energy + Delta-G solvation = -28605.868487 eV Core-core repulsion = 24504.720934 eV Total energy + Delta-G solvation = -4101.147552 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.78482 -40.06698 -38.05962 -37.58555 -36.03316 -34.68757 -33.39834 -33.06915 -31.12966 -30.49166 -29.16886 -27.94768 -27.64301 -25.11731 -23.72089 -22.82764 -22.01396 -21.59650 -21.07267 -20.31505 -19.37581 -18.13971 -17.39211 -17.09042 -16.76144 -16.45434 -16.20917 -15.91444 -15.48918 -15.02550 -14.67169 -14.38125 -14.22632 -13.98266 -13.69998 -13.58684 -13.31795 -13.26559 -13.09682 -13.05246 -12.67107 -12.60518 -12.27848 -12.12553 -12.05837 -11.57493 -10.99096 -10.93654 -10.88405 -10.71619 -10.60426 -10.53641 -10.34069 -10.28000 -10.16692 -10.05099 -9.70389 -9.57979 -8.99356 -8.94207 -8.86136 -6.95517 -5.76540 -3.04963 1.35569 1.53608 2.30771 2.55385 2.67551 3.18873 3.43965 3.50074 3.51939 4.01384 4.28762 4.46024 4.52665 4.58708 4.69375 4.70988 4.82883 4.99504 5.00186 5.09235 5.14772 5.30663 5.33875 5.45189 5.51274 5.55014 5.61446 5.69842 5.75917 5.81634 5.88412 5.98250 6.03632 6.12553 6.15053 6.31307 6.34018 6.52676 6.54152 6.63246 6.73817 6.97659 7.13268 7.22155 7.46470 7.67904 7.72126 8.15396 8.42275 9.53516 10.10863 10.45597 11.46297 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.021122 B = 0.001836 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.326590 B =15242.974518 C =16029.580024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.563 5.563 3 C 0.252 3.748 4 N -0.280 5.280 5 N -0.451 5.451 6 C 0.177 3.823 7 C -0.161 4.161 8 C 0.521 3.479 9 O -0.542 6.542 10 N -0.721 5.721 11 C 0.148 3.852 12 H 0.088 0.912 13 C -0.123 4.123 14 C -0.115 4.115 15 C -0.136 4.136 16 C 0.183 3.817 17 H 0.049 0.951 18 N -0.724 5.724 19 C -0.236 4.236 20 H 0.071 0.929 21 C -0.015 4.015 22 N -0.934 5.934 23 Si 0.906 3.094 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.292 1.292 27 C -0.129 4.129 28 C 0.641 3.359 29 O -0.550 6.550 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.231 0.769 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.400 0.600 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.056 0.944 43 H 0.062 0.938 44 H 0.054 0.946 45 H 0.383 0.617 46 H 0.254 0.746 47 H 0.068 0.932 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.116 23.526 14.576 32.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.293 5.293 3 C -0.047 4.047 4 N -0.101 5.101 5 N -0.272 5.272 6 C 0.056 3.944 7 C -0.202 4.202 8 C 0.306 3.694 9 O -0.419 6.419 10 N -0.371 5.371 11 C 0.044 3.956 12 H 0.106 0.894 13 C -0.162 4.162 14 C -0.153 4.153 15 C -0.177 4.177 16 C 0.073 3.927 17 H 0.067 0.933 18 N -0.365 5.365 19 C -0.367 4.367 20 H 0.089 0.911 21 C -0.211 4.211 22 N -0.582 5.582 23 Si 0.737 3.263 24 H -0.205 1.205 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.168 4.168 28 C 0.341 3.659 29 O -0.423 6.423 30 H 0.092 0.908 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.247 0.753 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.234 0.766 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.081 0.919 44 H 0.073 0.927 45 H 0.216 0.784 46 H 0.064 0.936 47 H 0.087 0.913 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.908 22.482 15.368 31.538 hybrid contribution -0.630 -0.669 -0.993 1.353 sum -16.538 21.812 14.375 30.918 Atomic orbital electron populations 1.21836 0.74126 1.04806 1.03614 1.45969 1.08966 1.06714 1.67630 1.25951 0.85855 0.94776 0.98144 1.77020 1.18163 0.92080 1.22826 1.49046 1.06252 1.03071 1.68828 1.21195 0.83279 0.93727 0.96158 1.22051 0.97424 1.01427 0.99327 1.20220 0.84624 0.80433 0.84117 1.90727 1.63662 1.56222 1.31331 1.46159 1.30014 1.52679 1.08272 1.21056 0.83093 0.91740 0.99737 0.89363 1.21876 0.94567 0.98237 1.01510 1.21485 0.96390 0.98310 0.99159 1.22289 1.01222 0.98726 0.95457 1.20103 0.90447 0.91340 0.90858 0.93344 1.42408 1.63397 1.23242 1.07421 1.19302 1.24928 0.96873 0.95615 0.91067 1.24742 1.01257 0.99195 0.95901 1.69672 1.48280 1.39678 1.00609 0.86125 0.79131 0.83695 0.77319 1.20528 1.21919 1.21916 1.22093 1.00601 0.98770 0.95374 1.16834 0.82183 0.85157 0.81769 1.91124 1.77654 1.15162 1.58340 0.90833 0.89265 0.89330 0.75312 0.87724 0.87706 0.88332 0.88092 0.76610 0.92093 0.92154 0.92161 0.92506 0.91889 0.92680 0.78354 0.93616 0.91308 0.91725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.29 11.05 59.85 0.66 0.95 16 2 N -0.56 -3.75 3.14 -130.10 -0.41 -4.16 16 3 C 0.25 1.17 12.66 -89.12 -1.13 0.04 16 4 N -0.28 -2.30 12.53 29.87 0.37 -1.92 16 5 N -0.45 -4.61 3.63 -65.12 -0.24 -4.85 16 6 C 0.18 1.81 5.68 -4.04 -0.02 1.79 16 7 C -0.16 -1.50 6.02 -27.89 -0.17 -1.67 16 8 C 0.52 6.35 7.79 -10.99 -0.09 6.26 16 9 O -0.54 -8.48 15.64 5.55 0.09 -8.40 16 10 N -0.72 -8.35 5.08 -53.81 -0.27 -8.62 16 11 C 0.15 2.07 2.46 -67.93 -0.17 1.90 16 12 H 0.09 1.40 7.58 -51.93 -0.39 1.01 16 13 C -0.12 -1.66 5.49 -26.73 -0.15 -1.80 16 14 C -0.11 -1.66 5.92 -26.73 -0.16 -1.81 16 15 C -0.14 -2.41 5.50 -26.73 -0.15 -2.56 16 16 C 0.18 3.57 2.77 -67.93 -0.19 3.38 16 17 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 18 N -0.72 -17.93 5.12 -53.42 -0.27 -18.20 16 19 C -0.24 -6.54 9.93 -15.06 -0.15 -6.69 16 20 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 21 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 22 N -0.93 -28.17 13.06 55.49 0.72 -27.44 16 23 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 26 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 27 C -0.13 -2.06 4.86 -26.73 -0.13 -2.19 16 28 C 0.64 7.18 8.60 -86.74 -0.75 6.43 16 29 O -0.55 -8.19 17.71 5.08 0.09 -8.10 16 30 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.09 -0.04 8.14 -51.93 -0.42 -0.46 16 32 H 0.09 0.37 8.08 -51.93 -0.42 -0.05 16 33 H 0.23 -0.21 8.06 -52.49 -0.42 -0.64 16 34 H 0.10 1.03 8.10 -51.93 -0.42 0.61 16 35 H 0.10 1.21 8.07 -51.93 -0.42 0.79 16 36 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.40 3.68 8.60 -40.82 -0.35 3.33 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 45 H 0.38 10.03 7.80 -40.82 -0.32 9.71 16 46 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 47 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 48 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 399.22 15.07 6.02 6.02 Total: -1.00 -37.20 399.22 -9.38 -46.58 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -7.78 Total: 8.08 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: -2.67 Total: 3.51 kcal Atomic # 7 Polarization: -65.11 SS G_CDS: -0.09 Total: -65.20 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: 0.18 Total: -16.50 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -37.20 -9.38 -46.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752974388.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.071 kcal (2) G-P(sol) polarization free energy of solvation -37.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds