Wall clock time and date at job start Tue Mar 31 2020 21:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.37358 * 125.83353 * 2 1 4 4 N 1.29398 * 108.82822 * 179.87966 * 3 2 1 5 5 N 1.40164 * 108.14079 * 0.38367 * 4 3 2 6 6 C 1.46500 * 126.35080 * 179.75963 * 5 4 3 7 7 C 1.53000 * 109.47297 * 270.00001 * 6 5 4 8 8 C 1.50694 * 109.47493 * 179.97438 * 7 6 5 9 9 O 1.21287 * 119.99916 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00346 * 179.97438 * 8 7 6 11 11 C 1.46495 * 120.00154 * 179.97438 * 10 8 7 12 12 H 1.08996 * 109.47180 * 35.00591 * 11 10 8 13 13 C 1.53002 * 109.47534 * 275.00160 * 11 10 8 14 14 C 1.52997 * 109.47351 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.47120 * 60.00090 * 14 13 11 16 16 C 1.53002 * 109.46936 * 300.00164 * 15 14 13 17 17 H 1.09003 * 109.47045 * 299.99955 * 16 15 14 18 18 N 1.46499 * 109.47008 * 180.02562 * 16 15 14 19 19 C 1.36936 * 120.00399 * 84.99545 * 18 16 15 20 20 H 1.08006 * 119.99725 * 0.02562 * 19 18 16 21 21 C 1.38817 * 120.00574 * 180.02562 * 19 18 16 22 22 N 1.31618 * 119.99348 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00334 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47034 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47153 * 119.99792 * 23 21 19 26 26 H 1.48493 * 109.47165 * 240.00129 * 23 21 19 27 27 C 1.52997 * 109.47351 * 59.99977 * 16 15 14 28 28 C 1.34811 * 125.83127 * 180.31410 * 2 1 3 29 29 O 1.21822 * 126.30255 * 359.92645 * 28 2 1 30 30 H 1.08999 * 109.46892 * 269.68897 * 1 2 3 31 31 H 1.09000 * 109.46803 * 29.68070 * 1 2 3 32 32 H 1.09000 * 109.47214 * 149.68863 * 1 2 3 33 33 H 1.07997 * 125.58660 * 0.04619 * 3 2 1 34 34 H 1.08996 * 109.47326 * 29.99810 * 6 5 4 35 35 H 1.09003 * 109.47534 * 150.00061 * 6 5 4 36 36 H 1.09001 * 109.47213 * 300.00303 * 7 6 5 37 37 H 1.09003 * 109.46779 * 59.99598 * 7 6 5 38 38 H 0.97006 * 119.99968 * 0.02562 * 10 8 7 39 39 H 1.09003 * 109.47045 * 300.00101 * 13 11 10 40 40 H 1.08998 * 109.46651 * 59.99783 * 13 11 10 41 41 H 1.08996 * 109.47207 * 300.00335 * 14 13 11 42 42 H 1.08997 * 109.47439 * 180.02562 * 14 13 11 43 43 H 1.09002 * 109.47360 * 180.02562 * 15 14 13 44 44 H 1.08996 * 109.46880 * 60.00045 * 15 14 13 45 45 H 0.97005 * 119.99935 * 265.00122 * 18 16 15 46 46 H 0.97004 * 119.99616 * 179.97438 * 22 21 19 47 47 H 1.09003 * 109.47015 * 179.97438 * 27 16 15 48 48 H 1.09003 * 109.47064 * 59.99989 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2692 1.1136 0.0000 4 7 3.5066 0.7352 0.0026 5 7 3.5344 -0.6662 -0.0046 6 6 4.7313 -1.5110 -0.0095 7 6 5.1472 -1.7977 -1.4537 8 6 6.3788 -2.6661 -1.4588 9 8 6.8753 -3.0205 -0.4105 10 7 6.9285 -3.0491 -2.6283 11 6 8.1260 -3.8929 -2.6332 12 1 8.0844 -4.5878 -1.7945 13 6 9.3708 -3.0126 -2.5048 14 6 10.6215 -3.8938 -2.5106 15 6 10.6857 -4.6796 -3.8219 16 6 9.4409 -5.5599 -3.9503 17 1 9.3995 -6.2551 -3.1117 18 7 9.5026 -6.3128 -5.2055 19 6 10.1859 -7.4982 -5.2601 20 1 10.6791 -7.8784 -4.3776 21 6 10.2449 -8.2113 -6.4496 22 7 9.6443 -7.7478 -7.5252 23 14 11.1764 -9.8287 -6.5238 24 1 11.7572 -10.1271 -5.1901 25 1 10.2457 -10.9186 -6.9129 26 1 12.2662 -9.7267 -7.5273 27 6 8.1902 -4.6787 -3.9445 28 6 2.2542 -1.0930 -0.0060 29 8 1.8805 -2.2524 -0.0111 30 1 -0.3633 -0.0056 1.0277 31 1 -0.3633 0.8929 -0.5089 32 1 -0.3633 -0.8872 -0.5187 33 1 1.9251 2.1373 0.0007 34 1 5.5416 -0.9960 0.5065 35 1 4.5153 -2.4502 0.4996 36 1 4.3369 -2.3127 -1.9698 37 1 5.3633 -0.8584 -1.9629 38 1 6.5316 -2.7655 -3.4667 39 1 9.4125 -2.3177 -3.3436 40 1 9.3249 -2.4524 -1.5709 41 1 10.5801 -4.5890 -1.6721 42 1 11.5083 -3.2667 -2.4187 43 1 11.5765 -5.3078 -3.8259 44 1 10.7272 -3.9844 -4.6603 45 1 9.0595 -5.9715 -5.9981 46 1 9.6858 -8.2459 -8.3565 47 1 7.3034 -5.3059 -4.0364 48 1 8.2317 -3.9835 -4.7830 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752974388.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:46 Heat of formation + Delta-G solvation = -18.220174 kcal Electronic energy + Delta-G solvation = -28606.983482 eV Core-core repulsion = 24504.720934 eV Total energy + Delta-G solvation = -4102.262547 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.39859 -41.15349 -39.37354 -38.42102 -36.72349 -36.21066 -34.84134 -33.79948 -32.93501 -31.36340 -30.35119 -29.36481 -28.25189 -25.91819 -25.63944 -23.53863 -23.18082 -22.65289 -22.02687 -21.40460 -20.76298 -19.22291 -18.77914 -17.98999 -17.65263 -17.41313 -17.12522 -16.68999 -16.46690 -16.32506 -15.94489 -15.54434 -15.29546 -15.13242 -15.10077 -14.81473 -14.50612 -14.27590 -14.12146 -13.88875 -13.55028 -13.49108 -13.40772 -13.20234 -12.91986 -12.87786 -12.85002 -12.39260 -12.25599 -12.14490 -12.02941 -11.98106 -11.65698 -11.51381 -11.39151 -11.37593 -11.12142 -10.89618 -10.79802 -10.06817 -9.65956 -9.00664 -7.95139 -5.22780 0.72845 1.09874 1.46343 1.46749 1.55097 1.56512 1.56907 2.07234 2.34848 2.55944 3.38308 3.45906 3.59991 3.65274 3.82269 3.87529 3.99308 4.05124 4.12790 4.26141 4.29052 4.31405 4.34873 4.45674 4.53178 4.53898 4.57533 4.65671 4.68308 4.71029 4.76515 4.82827 4.96259 5.02738 5.10446 5.12946 5.17691 5.22340 5.35642 5.46933 5.50054 5.53439 5.65734 5.70458 6.27951 6.51136 6.63948 6.93997 7.19335 7.34066 8.09863 8.33603 9.28451 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.021122 B = 0.001836 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.326590 B =15242.974518 C =16029.580024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.559 5.559 3 C 0.280 3.720 4 N -0.314 5.314 5 N -0.457 5.457 6 C 0.179 3.821 7 C -0.143 4.143 8 C 0.522 3.478 9 O -0.578 6.578 10 N -0.712 5.712 11 C 0.158 3.842 12 H 0.068 0.932 13 C -0.115 4.115 14 C -0.107 4.107 15 C -0.126 4.126 16 C 0.176 3.824 17 H 0.035 0.965 18 N -0.736 5.736 19 C -0.236 4.236 20 H 0.072 0.928 21 C -0.076 4.076 22 N -0.968 5.968 23 Si 0.969 3.031 24 H -0.268 1.268 25 H -0.294 1.294 26 H -0.293 1.293 27 C -0.115 4.115 28 C 0.623 3.377 29 O -0.602 6.602 30 H 0.083 0.917 31 H 0.133 0.867 32 H 0.069 0.931 33 H 0.290 0.710 34 H 0.106 0.894 35 H 0.082 0.918 36 H 0.100 0.900 37 H 0.125 0.875 38 H 0.414 0.586 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.057 0.943 42 H 0.077 0.923 43 H 0.041 0.959 44 H 0.054 0.946 45 H 0.374 0.626 46 H 0.250 0.750 47 H 0.058 0.942 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.929 26.493 15.116 35.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.286 5.286 3 C -0.018 4.018 4 N -0.135 5.135 5 N -0.277 5.277 6 C 0.057 3.943 7 C -0.184 4.184 8 C 0.309 3.691 9 O -0.458 6.458 10 N -0.363 5.363 11 C 0.052 3.948 12 H 0.086 0.914 13 C -0.153 4.153 14 C -0.146 4.146 15 C -0.166 4.166 16 C 0.067 3.933 17 H 0.053 0.947 18 N -0.375 5.375 19 C -0.368 4.368 20 H 0.090 0.910 21 C -0.268 4.268 22 N -0.619 5.619 23 Si 0.799 3.201 24 H -0.193 1.193 25 H -0.222 1.222 26 H -0.220 1.220 27 C -0.154 4.154 28 C 0.322 3.678 29 O -0.479 6.479 30 H 0.102 0.898 31 H 0.152 0.848 32 H 0.088 0.912 33 H 0.305 0.695 34 H 0.125 0.875 35 H 0.100 0.900 36 H 0.118 0.882 37 H 0.143 0.857 38 H 0.251 0.749 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.095 0.905 43 H 0.060 0.940 44 H 0.073 0.927 45 H 0.206 0.794 46 H 0.059 0.941 47 H 0.077 0.923 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -16.743 25.521 15.936 34.432 hybrid contribution -0.467 -1.483 -1.080 1.893 sum -17.210 24.038 14.856 33.086 Atomic orbital electron populations 1.22170 0.71891 1.06113 1.04748 1.46185 1.10198 1.05997 1.66225 1.27162 0.84398 0.96085 0.94109 1.77056 1.20284 0.90326 1.25849 1.49021 1.05739 1.04239 1.68667 1.21033 0.83624 0.93112 0.96513 1.21911 0.95746 1.01735 0.99036 1.20645 0.84944 0.80074 0.83455 1.90716 1.64827 1.57615 1.32641 1.45992 1.29285 1.51986 1.09027 1.20766 0.84619 0.91807 0.97573 0.91415 1.21803 0.93297 0.97921 1.02320 1.21418 0.97965 0.98301 0.96876 1.22090 0.98879 0.98241 0.97402 1.20322 0.93170 0.91638 0.88159 0.94733 1.42580 1.63060 1.23116 1.08776 1.19630 1.24074 0.97649 0.95472 0.90975 1.25508 1.02922 1.02596 0.95816 1.69811 1.50135 1.41033 1.00959 0.85127 0.77680 0.79749 0.77567 1.19279 1.22174 1.21981 1.21880 0.98170 0.98386 0.96976 1.17185 0.83003 0.85528 0.82120 1.91066 1.78577 1.17472 1.60776 0.89795 0.84841 0.91168 0.69535 0.87542 0.89992 0.88158 0.85733 0.74904 0.90638 0.91723 0.92457 0.90475 0.94038 0.92714 0.79446 0.94086 0.92320 0.90531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.31 11.05 127.77 1.41 1.72 16 2 N -0.56 -6.27 3.14 -683.68 -2.15 -8.42 16 3 C 0.28 1.59 12.66 179.82 2.28 3.87 16 4 N -0.31 -4.48 12.53 -59.42 -0.74 -5.22 16 5 N -0.46 -9.13 3.63 -478.01 -1.73 -10.87 16 6 C 0.18 3.71 5.68 86.38 0.49 4.20 16 7 C -0.14 -2.56 6.02 29.85 0.18 -2.38 16 8 C 0.52 12.39 7.79 87.66 0.68 13.07 16 9 O -0.58 -18.18 15.64 -3.05 -0.05 -18.23 16 10 N -0.71 -15.57 5.08 -442.54 -2.25 -17.82 16 11 C 0.16 4.27 2.46 44.99 0.11 4.38 16 12 H 0.07 2.16 7.58 -2.39 -0.02 2.14 16 13 C -0.11 -2.86 5.49 30.59 0.17 -2.69 16 14 C -0.11 -2.93 5.92 30.59 0.18 -2.74 16 15 C -0.13 -4.39 5.50 30.60 0.17 -4.22 16 16 C 0.18 6.92 2.77 44.99 0.12 7.04 16 17 H 0.03 1.45 8.08 -2.39 -0.02 1.43 16 18 N -0.74 -37.01 5.12 -322.93 -1.65 -38.66 16 19 C -0.24 -13.25 9.93 84.03 0.83 -12.42 16 20 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 21 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 22 N -0.97 -59.40 13.06 21.65 0.28 -59.12 16 23 Si 0.97 46.85 29.55 68.60 2.03 48.87 16 24 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 25 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 26 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 27 C -0.12 -3.61 4.86 30.59 0.15 -3.46 16 28 C 0.62 13.90 8.60 178.99 1.54 15.44 16 29 O -0.60 -18.80 17.71 -4.74 -0.08 -18.88 16 30 H 0.08 0.14 8.14 -2.39 -0.02 0.12 16 31 H 0.13 -0.72 8.14 -2.39 -0.02 -0.74 16 32 H 0.07 0.54 8.08 -2.39 -0.02 0.52 16 33 H 0.29 -2.27 8.06 -2.91 -0.02 -2.29 16 34 H 0.11 2.11 8.10 -2.39 -0.02 2.09 16 35 H 0.08 2.04 8.07 -2.39 -0.02 2.02 16 36 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.41 6.81 8.60 -92.70 -0.80 6.01 16 39 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.05 1.90 8.14 -2.39 -0.02 1.89 16 45 H 0.37 19.95 7.80 -92.70 -0.72 19.23 16 46 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 47 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 48 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -84.54 399.22 1.89 -82.64 By element: Atomic # 1 Polarization: 28.39 SS G_CDS: -0.55 Total: 27.84 kcal Atomic # 6 Polarization: 9.07 SS G_CDS: 8.78 Total: 17.85 kcal Atomic # 7 Polarization: -131.87 SS G_CDS: -8.24 Total: -140.11 kcal Atomic # 8 Polarization: -36.98 SS G_CDS: -0.13 Total: -37.11 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.87 kcal Total: -84.54 1.89 -82.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752974388.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.424 kcal (2) G-P(sol) polarization free energy of solvation -84.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds