Wall clock time and date at job start Tue Mar 31 2020 21:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37354 * 125.83420 * 2 1 4 4 N 1.29404 * 108.83205 * 180.02562 * 3 2 1 5 5 N 1.40170 * 108.13846 * 359.97438 * 4 3 2 6 6 C 1.46496 * 126.35278 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.47418 * 270.03528 * 6 5 4 8 8 C 1.50696 * 109.47260 * 180.02562 * 7 6 5 9 9 O 1.21287 * 120.00051 * 359.97438 * 8 7 6 10 10 N 1.34783 * 120.00006 * 179.97438 * 8 7 6 11 11 C 1.46506 * 119.99811 * 179.97438 * 10 8 7 12 12 H 1.08993 * 109.47068 * 34.99431 * 11 10 8 13 13 C 1.52997 * 109.46949 * 274.99482 * 11 10 8 14 14 C 1.52996 * 109.47131 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.46972 * 60.00459 * 14 13 11 16 16 C 1.52997 * 109.46817 * 299.99733 * 15 14 13 17 17 H 1.09001 * 109.47289 * 180.02562 * 16 15 14 18 18 N 1.46500 * 109.47473 * 299.99988 * 16 15 14 19 19 C 1.36928 * 120.00123 * 275.00490 * 18 16 15 20 20 H 1.08005 * 120.00253 * 359.97438 * 19 18 16 21 21 C 1.38812 * 120.00406 * 179.97438 * 19 18 16 22 22 N 1.31620 * 119.99622 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00442 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47381 * 59.99823 * 23 21 19 25 25 H 1.48499 * 109.47297 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47076 * 299.99545 * 23 21 19 27 27 C 1.52999 * 109.46691 * 155.00013 * 11 10 8 28 28 C 1.34825 * 125.83112 * 180.32403 * 2 1 3 29 29 O 1.21808 * 126.30042 * 0.02562 * 28 2 1 30 30 H 1.08997 * 109.47194 * 359.97438 * 1 2 3 31 31 H 1.08996 * 109.47025 * 119.98151 * 1 2 3 32 32 H 1.09006 * 109.47518 * 239.98099 * 1 2 3 33 33 H 1.08001 * 125.58819 * 359.97438 * 3 2 1 34 34 H 1.08997 * 109.47523 * 150.02607 * 6 5 4 35 35 H 1.09002 * 109.46908 * 30.02889 * 6 5 4 36 36 H 1.08997 * 109.47525 * 59.99081 * 7 6 5 37 37 H 1.09002 * 109.46560 * 299.99574 * 7 6 5 38 38 H 0.97000 * 119.99910 * 359.97438 * 10 8 7 39 39 H 1.09001 * 109.47289 * 60.00076 * 13 11 10 40 40 H 1.09000 * 109.47611 * 300.00647 * 13 11 10 41 41 H 1.08996 * 109.47452 * 300.00000 * 14 13 11 42 42 H 1.09000 * 109.47054 * 180.02562 * 14 13 11 43 43 H 1.09002 * 109.47070 * 179.97438 * 15 14 13 44 44 H 1.08996 * 109.47407 * 59.99513 * 15 14 13 45 45 H 0.97007 * 119.99645 * 94.99637 * 18 16 15 46 46 H 0.97006 * 120.00314 * 180.02562 * 22 21 19 47 47 H 1.08993 * 109.47839 * 59.99891 * 27 11 10 48 48 H 1.09000 * 109.47160 * 299.99453 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2691 1.1135 0.0000 4 7 3.5066 0.7352 -0.0005 5 7 3.5344 -0.6663 -0.0003 6 6 4.7312 -1.5111 -0.0003 7 6 5.1484 -1.8047 -1.4427 8 6 6.3792 -2.6742 -1.4426 9 8 6.8743 -3.0242 -0.3921 10 7 6.9298 -3.0630 -2.6098 11 6 8.1267 -3.9079 -2.6096 12 1 8.0836 -4.5988 -1.7677 13 6 9.3720 -3.0280 -2.4840 14 6 10.6220 -3.9102 -2.4845 15 6 10.6868 -4.7020 -3.7921 16 6 9.4415 -5.5820 -3.9176 17 1 9.4878 -6.1464 -4.8489 18 7 9.3839 -6.5111 -2.7864 19 6 10.0664 -7.6969 -2.8390 20 1 10.6470 -7.9476 -3.7146 21 6 10.0123 -8.5771 -1.7670 22 7 9.3052 -8.2715 -0.6997 23 14 10.9429 -10.1952 -1.8390 24 1 12.3933 -9.9250 -2.0084 25 1 10.7243 -10.9485 -0.5781 26 1 10.4515 -10.9982 -2.9875 27 6 8.1917 -4.7001 -3.9169 28 6 2.2542 -1.0931 -0.0062 29 8 1.8805 -2.2524 -0.0132 30 1 -0.3633 1.0276 0.0005 31 1 -0.3633 -0.5135 -0.8901 32 1 -0.3634 -0.5141 0.8898 33 1 1.9250 2.1373 -0.0004 34 1 4.5148 -2.4478 0.5133 35 1 5.5411 -0.9936 0.5139 36 1 5.3648 -0.8680 -1.9562 37 1 4.3385 -2.3222 -1.9569 38 1 6.5336 -2.7834 -3.4498 39 1 9.3256 -2.4634 -1.5528 40 1 9.4151 -2.3369 -3.3259 41 1 10.5792 -4.6014 -1.6428 42 1 11.5091 -3.2834 -2.3946 43 1 11.5776 -5.3303 -3.7926 44 1 10.7296 -4.0108 -4.6337 45 1 8.8622 -6.2861 -2.0001 46 1 9.2677 -8.8864 0.0496 47 1 8.2348 -4.0093 -4.7588 48 1 7.3045 -5.3270 -4.0064 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752974390.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:59 Heat of formation + Delta-G solvation = 13.011471 kcal Electronic energy + Delta-G solvation = -29201.088679 eV Core-core repulsion = 25100.180438 eV Total energy + Delta-G solvation = -4100.908242 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.69522 -39.90702 -38.06812 -37.49196 -35.93258 -34.43531 -33.13170 -32.88730 -30.90842 -30.36971 -29.03346 -28.03268 -27.66985 -25.00770 -23.60435 -22.75130 -21.88131 -21.75157 -21.19958 -20.22466 -18.57660 -17.98690 -17.26904 -17.12743 -16.75028 -16.35296 -15.93290 -15.76146 -15.33857 -14.89931 -14.62451 -14.37908 -14.12850 -13.82373 -13.60781 -13.51683 -13.27315 -13.24033 -12.97950 -12.89897 -12.53409 -12.27702 -12.19825 -11.97944 -11.73097 -11.45477 -11.33399 -10.84943 -10.77623 -10.69082 -10.50305 -10.43094 -10.20107 -10.14392 -10.04892 -9.88901 -9.50118 -9.43326 -8.86863 -8.84479 -8.70333 -6.88696 -5.68360 -2.97702 1.44792 1.61842 2.40270 2.75695 2.77064 3.36161 3.48524 3.52758 3.54333 4.07249 4.35164 4.59783 4.61505 4.65065 4.78749 4.84664 4.94383 5.04838 5.17022 5.25320 5.28918 5.39246 5.53148 5.58287 5.65392 5.66908 5.74133 5.77766 5.89576 5.92397 5.94745 6.12654 6.15680 6.21519 6.23626 6.42445 6.47788 6.66827 6.73255 6.84772 6.89500 7.06398 7.15488 7.31158 7.65209 7.76032 7.77605 8.37232 8.49394 9.60251 10.18128 10.52344 11.53700 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017479 B = 0.002194 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.573098 B =12760.278125 C =13706.104545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.564 5.564 3 C 0.250 3.750 4 N -0.280 5.280 5 N -0.450 5.450 6 C 0.176 3.824 7 C -0.159 4.159 8 C 0.517 3.483 9 O -0.532 6.532 10 N -0.724 5.724 11 C 0.145 3.855 12 H 0.100 0.900 13 C -0.119 4.119 14 C -0.110 4.110 15 C -0.135 4.135 16 C 0.179 3.821 17 H 0.051 0.949 18 N -0.721 5.721 19 C -0.240 4.240 20 H 0.069 0.931 21 C -0.013 4.013 22 N -0.930 5.930 23 Si 0.905 3.095 24 H -0.287 1.287 25 H -0.292 1.292 26 H -0.287 1.287 27 C -0.128 4.128 28 C 0.641 3.359 29 O -0.548 6.548 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.230 0.770 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.395 0.605 39 H 0.058 0.942 40 H 0.053 0.947 41 H 0.078 0.922 42 H 0.048 0.952 43 H 0.061 0.939 44 H 0.042 0.958 45 H 0.385 0.615 46 H 0.256 0.744 47 H 0.060 0.940 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.181 24.706 -3.349 29.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.294 5.294 3 C -0.049 4.049 4 N -0.101 5.101 5 N -0.271 5.271 6 C 0.055 3.945 7 C -0.200 4.200 8 C 0.302 3.698 9 O -0.408 6.408 10 N -0.374 5.374 11 C 0.041 3.959 12 H 0.118 0.882 13 C -0.158 4.158 14 C -0.148 4.148 15 C -0.175 4.175 16 C 0.068 3.932 17 H 0.069 0.931 18 N -0.364 5.364 19 C -0.371 4.371 20 H 0.087 0.913 21 C -0.209 4.209 22 N -0.578 5.578 23 Si 0.736 3.264 24 H -0.214 1.214 25 H -0.218 1.218 26 H -0.214 1.214 27 C -0.167 4.167 28 C 0.340 3.660 29 O -0.421 6.421 30 H 0.111 0.889 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.246 0.754 34 H 0.125 0.875 35 H 0.123 0.877 36 H 0.117 0.883 37 H 0.115 0.885 38 H 0.229 0.771 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.097 0.903 42 H 0.067 0.933 43 H 0.080 0.920 44 H 0.061 0.939 45 H 0.220 0.780 46 H 0.065 0.935 47 H 0.079 0.921 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.978 23.674 -2.595 28.134 hybrid contribution -0.646 -0.760 -0.245 1.027 sum -15.624 22.914 -2.840 27.879 Atomic orbital electron populations 1.21800 0.74193 1.04079 1.04037 1.45981 1.08914 1.06750 1.67715 1.25954 0.85914 0.94694 0.98381 1.77009 1.18141 0.92206 1.22736 1.49075 1.06292 1.02992 1.68743 1.21232 0.83204 0.93790 0.96279 1.22034 0.97521 1.01247 0.99244 1.20210 0.84663 0.80643 0.84316 1.90781 1.63325 1.55728 1.30980 1.46156 1.30289 1.52941 1.07988 1.21083 0.82784 0.91620 1.00402 0.88233 1.21837 0.95019 0.97951 1.01000 1.21357 0.95413 0.97950 1.00071 1.22176 1.01169 0.98258 0.95932 1.20150 0.90660 0.89718 0.92662 0.93147 1.42500 1.59092 1.18158 1.16621 1.19169 1.22796 0.94484 1.00671 0.91311 1.24741 1.00705 0.98833 0.96628 1.69659 1.44517 1.37166 1.06449 0.86306 0.79519 0.83953 0.76597 1.21377 1.21791 1.21399 1.22065 1.00590 0.98391 0.95607 1.16833 0.82173 0.85128 0.81859 1.91128 1.77645 1.15159 1.58145 0.88885 0.90446 0.90448 0.75363 0.87541 0.87664 0.88304 0.88506 0.77147 0.92298 0.92860 0.90316 0.93317 0.92022 0.93935 0.78020 0.93451 0.92120 0.91424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.37 11.08 59.85 0.66 1.03 16 2 N -0.56 -4.27 3.14 -130.11 -0.41 -4.68 16 3 C 0.25 1.36 12.61 -89.12 -1.12 0.24 16 4 N -0.28 -2.58 12.53 29.87 0.37 -2.21 16 5 N -0.45 -5.20 3.63 -65.12 -0.24 -5.43 16 6 C 0.18 2.12 5.68 -4.04 -0.02 2.09 16 7 C -0.16 -1.74 6.02 -27.89 -0.17 -1.91 16 8 C 0.52 7.50 7.79 -10.98 -0.09 7.41 16 9 O -0.53 -10.08 15.64 5.55 0.09 -10.00 16 10 N -0.72 -9.64 5.08 -53.81 -0.27 -9.91 16 11 C 0.14 2.39 2.28 -67.93 -0.16 2.23 16 12 H 0.10 2.11 5.94 -51.93 -0.31 1.81 16 13 C -0.12 -1.88 5.49 -26.73 -0.15 -2.03 16 14 C -0.11 -1.93 5.77 -26.73 -0.15 -2.09 16 15 C -0.13 -2.39 5.61 -26.73 -0.15 -2.54 16 16 C 0.18 3.47 3.10 -67.96 -0.21 3.26 16 17 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 18 N -0.72 -17.90 4.28 -53.45 -0.23 -18.13 16 19 C -0.24 -6.66 9.93 -15.06 -0.15 -6.81 16 20 H 0.07 1.85 7.83 -52.48 -0.41 1.43 16 21 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 22 N -0.93 -28.79 13.06 55.49 0.72 -28.07 16 23 Si 0.91 22.81 29.55 -169.99 -5.02 17.78 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 27 C -0.13 -2.04 5.07 -26.76 -0.14 -2.17 16 28 C 0.64 7.94 8.61 -86.72 -0.75 7.20 16 29 O -0.55 -8.92 17.77 5.09 0.09 -8.83 16 30 H 0.09 -0.02 8.07 -51.93 -0.42 -0.44 16 31 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.23 -0.07 8.06 -52.49 -0.42 -0.49 16 34 H 0.11 1.46 8.07 -51.93 -0.42 1.04 16 35 H 0.11 1.23 8.10 -51.93 -0.42 0.81 16 36 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.40 3.93 8.60 -40.82 -0.35 3.58 16 39 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.08 1.68 7.60 -51.93 -0.39 1.29 16 42 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.38 10.36 6.06 -40.82 -0.25 10.11 16 46 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 47 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 394.82 15.07 5.95 5.95 Total: -1.00 -38.10 394.82 -9.23 -47.32 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -7.60 Total: 10.74 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: -2.68 Total: 5.46 kcal Atomic # 7 Polarization: -68.38 SS G_CDS: -0.05 Total: -68.42 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: 0.18 Total: -18.83 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -38.10 -9.23 -47.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752974390.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.333 kcal (2) G-P(sol) polarization free energy of solvation -38.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds