Wall clock time and date at job start Tue Mar 31 2020 21:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37354 * 125.83420 * 2 1 4 4 N 1.29404 * 108.83205 * 180.02562 * 3 2 1 5 5 N 1.40170 * 108.13846 * 359.97438 * 4 3 2 6 6 C 1.46496 * 126.35278 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.47418 * 270.03528 * 6 5 4 8 8 C 1.50696 * 109.47260 * 180.02562 * 7 6 5 9 9 O 1.21287 * 120.00051 * 359.97438 * 8 7 6 10 10 N 1.34783 * 120.00006 * 179.97438 * 8 7 6 11 11 C 1.46506 * 119.99811 * 179.97438 * 10 8 7 12 12 H 1.08993 * 109.47068 * 34.99431 * 11 10 8 13 13 C 1.52997 * 109.46949 * 274.99482 * 11 10 8 14 14 C 1.52996 * 109.47131 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.46972 * 60.00459 * 14 13 11 16 16 C 1.52997 * 109.46817 * 299.99733 * 15 14 13 17 17 H 1.09001 * 109.47289 * 180.02562 * 16 15 14 18 18 N 1.46500 * 109.47473 * 299.99988 * 16 15 14 19 19 C 1.36928 * 120.00123 * 275.00490 * 18 16 15 20 20 H 1.08005 * 120.00253 * 359.97438 * 19 18 16 21 21 C 1.38812 * 120.00406 * 179.97438 * 19 18 16 22 22 N 1.31620 * 119.99622 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00442 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47381 * 59.99823 * 23 21 19 25 25 H 1.48499 * 109.47297 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47076 * 299.99545 * 23 21 19 27 27 C 1.52999 * 109.46691 * 155.00013 * 11 10 8 28 28 C 1.34825 * 125.83112 * 180.32403 * 2 1 3 29 29 O 1.21808 * 126.30042 * 0.02562 * 28 2 1 30 30 H 1.08997 * 109.47194 * 359.97438 * 1 2 3 31 31 H 1.08996 * 109.47025 * 119.98151 * 1 2 3 32 32 H 1.09006 * 109.47518 * 239.98099 * 1 2 3 33 33 H 1.08001 * 125.58819 * 359.97438 * 3 2 1 34 34 H 1.08997 * 109.47523 * 150.02607 * 6 5 4 35 35 H 1.09002 * 109.46908 * 30.02889 * 6 5 4 36 36 H 1.08997 * 109.47525 * 59.99081 * 7 6 5 37 37 H 1.09002 * 109.46560 * 299.99574 * 7 6 5 38 38 H 0.97000 * 119.99910 * 359.97438 * 10 8 7 39 39 H 1.09001 * 109.47289 * 60.00076 * 13 11 10 40 40 H 1.09000 * 109.47611 * 300.00647 * 13 11 10 41 41 H 1.08996 * 109.47452 * 300.00000 * 14 13 11 42 42 H 1.09000 * 109.47054 * 180.02562 * 14 13 11 43 43 H 1.09002 * 109.47070 * 179.97438 * 15 14 13 44 44 H 1.08996 * 109.47407 * 59.99513 * 15 14 13 45 45 H 0.97007 * 119.99645 * 94.99637 * 18 16 15 46 46 H 0.97006 * 120.00314 * 180.02562 * 22 21 19 47 47 H 1.08993 * 109.47839 * 59.99891 * 27 11 10 48 48 H 1.09000 * 109.47160 * 299.99453 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2691 1.1135 0.0000 4 7 3.5066 0.7352 -0.0005 5 7 3.5344 -0.6663 -0.0003 6 6 4.7312 -1.5111 -0.0003 7 6 5.1484 -1.8047 -1.4427 8 6 6.3792 -2.6742 -1.4426 9 8 6.8743 -3.0242 -0.3921 10 7 6.9298 -3.0630 -2.6098 11 6 8.1267 -3.9079 -2.6096 12 1 8.0836 -4.5988 -1.7677 13 6 9.3720 -3.0280 -2.4840 14 6 10.6220 -3.9102 -2.4845 15 6 10.6868 -4.7020 -3.7921 16 6 9.4415 -5.5820 -3.9176 17 1 9.4878 -6.1464 -4.8489 18 7 9.3839 -6.5111 -2.7864 19 6 10.0664 -7.6969 -2.8390 20 1 10.6470 -7.9476 -3.7146 21 6 10.0123 -8.5771 -1.7670 22 7 9.3052 -8.2715 -0.6997 23 14 10.9429 -10.1952 -1.8390 24 1 12.3933 -9.9250 -2.0084 25 1 10.7243 -10.9485 -0.5781 26 1 10.4515 -10.9982 -2.9875 27 6 8.1917 -4.7001 -3.9169 28 6 2.2542 -1.0931 -0.0062 29 8 1.8805 -2.2524 -0.0132 30 1 -0.3633 1.0276 0.0005 31 1 -0.3633 -0.5135 -0.8901 32 1 -0.3634 -0.5141 0.8898 33 1 1.9250 2.1373 -0.0004 34 1 4.5148 -2.4478 0.5133 35 1 5.5411 -0.9936 0.5139 36 1 5.3648 -0.8680 -1.9562 37 1 4.3385 -2.3222 -1.9569 38 1 6.5336 -2.7834 -3.4498 39 1 9.3256 -2.4634 -1.5528 40 1 9.4151 -2.3369 -3.3259 41 1 10.5792 -4.6014 -1.6428 42 1 11.5091 -3.2834 -2.3946 43 1 11.5776 -5.3303 -3.7926 44 1 10.7296 -4.0108 -4.6337 45 1 8.8622 -6.2861 -2.0001 46 1 9.2677 -8.8864 0.0496 47 1 8.2348 -4.0093 -4.7588 48 1 7.3045 -5.3270 -4.0064 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752974390.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:58 Heat of formation + Delta-G solvation = -14.441581 kcal Electronic energy + Delta-G solvation = -29202.279133 eV Core-core repulsion = 25100.180438 eV Total energy + Delta-G solvation = -4102.098695 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.40562 -41.17520 -39.48594 -38.43551 -36.71139 -35.99950 -34.72838 -33.80665 -32.69897 -31.35014 -30.35219 -29.57135 -28.25685 -25.91887 -25.62222 -23.54008 -23.29587 -22.89249 -22.10807 -21.44448 -20.04960 -19.22643 -18.81893 -18.00963 -17.68012 -17.23315 -17.13655 -16.70540 -16.52677 -16.34579 -15.92909 -15.45763 -15.36652 -15.29890 -15.07333 -14.80597 -14.50836 -14.25490 -13.90128 -13.69559 -13.47094 -13.43157 -13.40627 -13.22791 -12.89575 -12.85994 -12.79169 -12.61296 -12.40477 -12.19323 -12.16322 -11.80867 -11.57537 -11.47012 -11.37888 -11.20589 -11.10657 -10.82553 -10.75594 -10.02042 -9.67239 -8.95572 -7.90319 -5.18206 0.70929 1.10164 1.44998 1.48497 1.54208 1.54522 1.59089 2.09172 2.36092 2.57695 3.42456 3.44572 3.59991 3.75740 3.84078 3.95304 3.98580 4.09176 4.13953 4.20569 4.30761 4.33729 4.37561 4.46588 4.49955 4.58778 4.64809 4.68951 4.71043 4.77541 4.81867 4.82892 4.96221 5.02785 5.08778 5.11231 5.22267 5.31666 5.44362 5.47222 5.53361 5.64693 5.68515 5.70839 6.31099 6.55355 6.63596 6.93331 7.26811 7.36429 8.16564 8.36842 9.33042 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017479 B = 0.002194 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.573098 B =12760.278125 C =13706.104545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.558 5.558 3 C 0.281 3.719 4 N -0.315 5.315 5 N -0.457 5.457 6 C 0.178 3.822 7 C -0.138 4.138 8 C 0.514 3.486 9 O -0.584 6.584 10 N -0.708 5.708 11 C 0.151 3.849 12 H 0.042 0.958 13 C -0.108 4.108 14 C -0.107 4.107 15 C -0.125 4.125 16 C 0.166 3.834 17 H 0.054 0.946 18 N -0.734 5.734 19 C -0.231 4.231 20 H 0.079 0.921 21 C -0.084 4.084 22 N -0.974 5.974 23 Si 0.971 3.029 24 H -0.278 1.278 25 H -0.302 1.302 26 H -0.277 1.277 27 C -0.115 4.115 28 C 0.622 3.378 29 O -0.602 6.602 30 H 0.145 0.855 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.293 0.707 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.130 0.870 37 H 0.102 0.898 38 H 0.417 0.583 39 H 0.044 0.956 40 H 0.093 0.907 41 H 0.026 0.974 42 H 0.068 0.932 43 H 0.039 0.961 44 H 0.087 0.913 45 H 0.370 0.630 46 H 0.247 0.753 47 H 0.110 0.890 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.028 28.409 -6.272 33.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.285 5.285 3 C -0.017 4.017 4 N -0.136 5.136 5 N -0.277 5.277 6 C 0.056 3.944 7 C -0.178 4.178 8 C 0.300 3.700 9 O -0.464 6.464 10 N -0.359 5.359 11 C 0.046 3.954 12 H 0.060 0.940 13 C -0.147 4.147 14 C -0.145 4.145 15 C -0.165 4.165 16 C 0.057 3.943 17 H 0.072 0.928 18 N -0.375 5.375 19 C -0.363 4.363 20 H 0.096 0.904 21 C -0.275 4.275 22 N -0.625 5.625 23 Si 0.801 3.199 24 H -0.204 1.204 25 H -0.228 1.228 26 H -0.203 1.203 27 C -0.154 4.154 28 C 0.321 3.679 29 O -0.480 6.480 30 H 0.163 0.837 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.308 0.692 34 H 0.094 0.906 35 H 0.122 0.878 36 H 0.148 0.852 37 H 0.120 0.880 38 H 0.254 0.746 39 H 0.063 0.937 40 H 0.111 0.889 41 H 0.045 0.955 42 H 0.087 0.913 43 H 0.058 0.942 44 H 0.105 0.895 45 H 0.202 0.798 46 H 0.056 0.944 47 H 0.128 0.872 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.842 27.461 -5.619 32.197 hybrid contribution -0.457 -1.758 0.627 1.921 sum -16.300 25.704 -4.991 30.843 Atomic orbital electron populations 1.22170 0.71795 1.07309 1.03466 1.46189 1.10198 1.05922 1.66218 1.27240 0.84340 0.96072 0.94001 1.77050 1.20412 0.90158 1.25962 1.48997 1.05658 1.04309 1.68701 1.20997 0.83672 0.92926 0.96815 1.21878 0.95457 1.01696 0.98817 1.20834 0.85180 0.80272 0.83685 1.90769 1.64971 1.57690 1.32958 1.45916 1.29301 1.51863 1.08839 1.20757 0.84509 0.91439 0.98690 0.93993 1.21736 0.93342 0.97649 1.01934 1.21296 0.97436 0.97568 0.98239 1.22048 0.98863 0.98297 0.97319 1.20507 0.93333 0.89822 0.90599 0.92843 1.42747 1.58518 1.18509 1.17761 1.19623 1.21372 0.95060 1.00288 0.90360 1.25570 1.02633 1.02609 0.96702 1.69858 1.47134 1.38270 1.07278 0.85239 0.78546 0.79946 0.76219 1.20426 1.22822 1.20262 1.21946 0.98254 0.98407 0.96765 1.17196 0.82979 0.85548 0.82165 1.91068 1.78603 1.17625 1.60665 0.83688 0.90931 0.91259 0.69221 0.90608 0.87793 0.85176 0.87980 0.74554 0.93706 0.88870 0.95496 0.91313 0.94180 0.89497 0.79763 0.94442 0.87191 0.92436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.44 11.08 127.77 1.42 1.86 16 2 N -0.56 -7.27 3.14 -683.69 -2.15 -9.41 16 3 C 0.28 2.00 12.61 179.82 2.27 4.27 16 4 N -0.31 -5.14 12.53 -59.42 -0.74 -5.89 16 5 N -0.46 -10.54 3.63 -478.03 -1.73 -12.28 16 6 C 0.18 4.52 5.68 86.38 0.49 5.01 16 7 C -0.14 -2.96 6.02 29.85 0.18 -2.78 16 8 C 0.51 15.18 7.79 87.65 0.68 15.86 16 9 O -0.58 -23.71 15.64 -3.05 -0.05 -23.76 16 10 N -0.71 -18.10 5.08 -442.52 -2.25 -20.35 16 11 C 0.15 4.96 2.28 44.99 0.10 5.06 16 12 H 0.04 1.91 5.94 -2.39 -0.01 1.89 16 13 C -0.11 -3.26 5.49 30.59 0.17 -3.09 16 14 C -0.11 -3.73 5.77 30.59 0.18 -3.56 16 15 C -0.13 -4.19 5.61 30.59 0.17 -4.02 16 16 C 0.17 6.30 3.10 44.98 0.14 6.44 16 17 H 0.05 2.01 8.08 -2.39 -0.02 1.99 16 18 N -0.73 -37.68 4.28 -323.02 -1.38 -39.06 16 19 C -0.23 -13.12 9.93 84.03 0.83 -12.28 16 20 H 0.08 4.20 7.83 -2.91 -0.02 4.17 16 21 C -0.08 -5.01 5.50 84.86 0.47 -4.54 16 22 N -0.97 -63.53 13.06 21.65 0.28 -63.25 16 23 Si 0.97 48.24 29.55 68.60 2.03 50.26 16 24 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 25 H -0.30 -15.32 7.11 99.48 0.71 -14.61 16 26 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 27 C -0.12 -3.46 5.07 30.58 0.16 -3.30 16 28 C 0.62 15.58 8.61 178.99 1.54 17.12 16 29 O -0.60 -20.78 17.77 -4.69 -0.08 -20.86 16 30 H 0.14 -0.83 8.07 -2.39 -0.02 -0.84 16 31 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 33 H 0.29 -2.08 8.06 -2.91 -0.02 -2.10 16 34 H 0.08 2.35 8.07 -2.39 -0.02 2.33 16 35 H 0.10 2.59 8.10 -2.39 -0.02 2.57 16 36 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.42 7.04 8.60 -92.71 -0.80 6.24 16 39 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.03 1.20 7.60 -2.39 -0.02 1.18 16 42 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.37 21.19 6.06 -92.70 -0.56 20.63 16 46 H 0.25 15.79 8.31 -92.70 -0.77 15.02 16 47 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 48 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -92.95 394.82 2.34 -90.61 By element: Atomic # 1 Polarization: 32.32 SS G_CDS: -0.38 Total: 31.94 kcal Atomic # 6 Polarization: 13.24 SS G_CDS: 8.79 Total: 22.04 kcal Atomic # 7 Polarization: -142.26 SS G_CDS: -7.97 Total: -150.23 kcal Atomic # 8 Polarization: -44.49 SS G_CDS: -0.13 Total: -44.62 kcal Atomic # 14 Polarization: 48.24 SS G_CDS: 2.03 Total: 50.26 kcal Total: -92.95 2.34 -90.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752974390.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.166 kcal (2) G-P(sol) polarization free energy of solvation -92.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds