Wall clock time and date at job start Tue Mar 31 2020 21:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36939 * 120.00051 * 2 1 4 4 H 1.08000 * 120.00424 * 203.32072 * 3 2 1 5 5 C 1.38810 * 119.99861 * 23.31803 * 3 2 1 6 6 N 1.31623 * 120.00112 * 14.43038 * 5 3 2 7 7 Si 1.86794 * 120.00095 * 194.42964 * 5 3 2 8 8 H 1.48500 * 109.47078 * 359.97438 * 7 5 3 9 9 H 1.48498 * 109.47439 * 120.00089 * 7 5 3 10 10 H 1.48502 * 109.47015 * 240.00012 * 7 5 3 11 11 C 1.46500 * 120.00237 * 180.02562 * 2 1 3 12 12 C 1.52993 * 109.47379 * 89.99386 * 11 2 1 13 13 H 1.09003 * 110.88736 * 57.43347 * 12 11 2 14 14 C 1.55158 * 111.00771 * 181.34930 * 12 11 2 15 15 C 1.54333 * 103.02368 * 153.38230 * 14 12 11 16 16 N 1.47025 * 107.26393 * 338.14381 * 15 14 12 17 17 C 1.34772 * 125.64715 * 178.84293 * 16 15 14 18 18 O 1.21280 * 120.00043 * 179.69234 * 17 16 15 19 19 C 1.50698 * 120.00004 * 359.69881 * 17 16 15 20 20 O 1.42905 * 109.47114 * 179.97438 * 19 17 16 21 21 C 1.42906 * 113.99849 * 180.02562 * 20 19 17 22 22 C 1.50701 * 109.46849 * 180.02562 * 21 20 19 23 23 N 1.30513 * 126.35315 * 90.02187 * 22 21 20 24 24 N 1.28591 * 109.67691 * 179.73265 * 23 22 21 25 25 C 1.30519 * 109.67125 * 359.97438 * 24 23 22 26 26 N 1.35488 * 107.30786 * 0.02562 * 25 24 23 27 27 C 1.46507 * 126.98074 * 180.02562 * 26 25 24 28 28 C 1.47421 * 108.70223 * 358.58748 * 16 15 14 29 29 H 1.09000 * 109.46832 * 275.18285 * 1 2 3 30 30 H 1.09001 * 109.47177 * 35.18429 * 1 2 3 31 31 H 1.09003 * 109.46836 * 155.18282 * 1 2 3 32 32 H 0.96997 * 120.00062 * 180.02562 * 6 5 3 33 33 H 1.09005 * 109.46791 * 329.99782 * 11 2 1 34 34 H 1.09004 * 109.47429 * 210.00170 * 11 2 1 35 35 H 1.08997 * 110.72404 * 271.94629 * 14 12 11 36 36 H 1.09005 * 110.71409 * 35.04052 * 14 12 11 37 37 H 1.08998 * 109.99279 * 218.67153 * 15 14 12 38 38 H 1.09004 * 109.77537 * 97.49823 * 15 14 12 39 39 H 1.09001 * 109.47543 * 59.99538 * 19 17 16 40 40 H 1.09005 * 109.47550 * 299.99364 * 19 17 16 41 41 H 1.08992 * 109.47692 * 59.99494 * 21 20 19 42 42 H 1.09002 * 109.46463 * 299.99423 * 21 20 19 43 43 H 1.08003 * 126.34574 * 179.97438 * 25 24 23 44 44 H 1.08999 * 109.46582 * 269.97293 * 27 26 25 45 45 H 1.09000 * 109.47000 * 29.97244 * 27 26 25 46 46 H 1.08998 * 109.47172 * 149.97534 * 27 26 25 47 47 H 1.09001 * 110.37090 * 143.19750 * 28 16 15 48 48 H 1.09000 * 110.36147 * 265.40332 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1635 1.2242 -0.3703 5 6 1.5407 2.3389 0.4759 6 7 0.4323 2.2549 1.1808 7 14 2.2940 4.0099 0.1158 8 1 3.5293 3.8328 -0.6891 9 1 1.3225 4.8378 -0.6431 10 1 2.6295 4.6874 1.3940 11 6 2.1975 -1.2687 -0.0006 12 6 2.4524 -1.7098 -1.4432 13 1 3.0020 -0.9451 -1.9921 14 6 3.1983 -3.0697 -1.4854 15 6 2.7665 -3.6611 -2.8440 16 7 1.5089 -3.0026 -3.2266 17 6 0.8187 -3.2269 -4.3623 18 8 -0.2146 -2.6277 -4.5724 19 6 1.3309 -4.2223 -5.3712 20 8 0.4315 -4.2825 -6.4800 21 6 0.8265 -5.2026 -7.4996 22 6 -0.1881 -5.1837 -8.6138 23 7 -0.1680 -4.4109 -9.6653 24 7 -1.1842 -4.6672 -10.4104 25 6 -1.8985 -5.6156 -9.8683 26 7 -1.2869 -5.9703 -8.7126 27 6 -1.7243 -6.9967 -7.7629 28 6 1.1246 -2.0610 -2.1594 29 1 -0.3633 0.0928 1.0235 30 1 -0.3633 0.8399 -0.5921 31 1 -0.3633 -0.9328 -0.4314 32 1 0.0065 3.0606 1.5130 33 1 1.6084 -2.0286 0.5130 34 1 3.1500 -1.1386 0.5134 35 1 4.2773 -2.9190 -1.4532 36 1 2.8754 -3.7122 -0.6662 37 1 2.6086 -4.7355 -2.7495 38 1 3.5325 -3.4613 -3.5934 39 1 1.4016 -5.2062 -4.9074 40 1 2.3166 -3.9129 -5.7189 41 1 0.8868 -6.2065 -7.0796 42 1 1.8016 -4.9136 -7.8917 43 1 -2.8089 -6.0386 -10.2667 44 1 -2.3828 -6.5470 -7.0199 45 1 -2.2609 -7.7808 -8.2971 46 1 -0.8545 -7.4257 -7.2655 47 1 0.6759 -1.1647 -2.5877 48 1 0.4316 -2.5366 -1.4654 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753360207.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:16 Heat of formation + Delta-G solvation = 40.866120 kcal Electronic energy + Delta-G solvation = -28868.819909 eV Core-core repulsion = 24769.119535 eV Total energy + Delta-G solvation = -4099.700374 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.47177 -40.09026 -38.41928 -37.24698 -35.45372 -35.34652 -32.47689 -31.98840 -30.72779 -29.23220 -28.47876 -28.08036 -26.78506 -26.00748 -25.03929 -23.07486 -22.77039 -21.40633 -21.17257 -19.85489 -19.42560 -17.86328 -17.43866 -17.05113 -16.81069 -16.56669 -16.33083 -15.84884 -15.55656 -15.28828 -14.82109 -14.73095 -14.16932 -13.90693 -13.71296 -13.54532 -13.47625 -13.08820 -12.90780 -12.80535 -12.43186 -12.24494 -12.22523 -11.85813 -11.83887 -11.47124 -11.02225 -10.94116 -10.74317 -10.73168 -10.60229 -10.49250 -10.37626 -10.23409 -10.05773 -9.91195 -9.82796 -9.80189 -9.62212 -8.57007 -8.51368 -6.72314 -5.70197 -3.17657 1.25374 2.01862 2.38806 2.60444 2.77538 3.39955 3.47631 3.49042 3.51147 3.99959 4.08527 4.15107 4.33192 4.41636 4.50610 4.52548 4.67487 4.68496 4.73429 4.81457 4.84400 4.95800 5.04772 5.12714 5.35183 5.42217 5.43090 5.47973 5.64967 5.70867 5.89093 5.91217 6.00941 6.10601 6.22844 6.34776 6.38160 6.43352 6.59218 6.67257 6.78487 6.85478 7.39675 7.55082 7.75085 7.83122 8.19167 8.36792 8.41963 9.25264 9.89166 10.37783 11.34191 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017564 B = 0.002035 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.764893 B =13755.924087 C =14412.370594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.601 5.601 3 C -0.255 4.255 4 H 0.068 0.932 5 C 0.002 3.998 6 N -0.905 5.905 7 Si 0.902 3.098 8 H -0.278 1.278 9 H -0.289 1.289 10 H -0.291 1.291 11 C 0.163 3.837 12 C -0.118 4.118 13 H 0.083 0.917 14 C -0.128 4.128 15 C 0.098 3.902 16 N -0.618 5.618 17 C 0.525 3.475 18 O -0.518 6.518 19 C 0.051 3.949 20 O -0.356 6.356 21 C 0.150 3.850 22 C 0.174 3.826 23 N -0.270 5.270 24 N -0.296 5.296 25 C 0.155 3.845 26 N -0.469 5.469 27 C 0.071 3.929 28 C 0.122 3.878 29 H 0.031 0.969 30 H 0.038 0.962 31 H 0.001 0.999 32 H 0.252 0.748 33 H 0.038 0.962 34 H 0.053 0.947 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.071 0.929 42 H 0.091 0.909 43 H 0.222 0.778 44 H 0.088 0.912 45 H 0.094 0.906 46 H 0.090 0.910 47 H 0.081 0.919 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.674 -26.017 -14.017 29.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.323 5.323 3 C -0.385 4.385 4 H 0.085 0.915 5 C -0.197 4.197 6 N -0.550 5.550 7 Si 0.732 3.268 8 H -0.203 1.203 9 H -0.216 1.216 10 H -0.218 1.218 11 C 0.035 3.965 12 C -0.141 4.141 13 H 0.101 0.899 14 C -0.167 4.167 15 C -0.025 4.025 16 N -0.355 5.355 17 C 0.311 3.689 18 O -0.392 6.392 19 C -0.029 4.029 20 O -0.273 6.273 21 C 0.071 3.929 22 C -0.093 4.093 23 N -0.112 5.112 24 N -0.136 5.136 25 C -0.132 4.132 26 N -0.160 5.160 27 C -0.072 4.072 28 C 0.001 3.999 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.020 0.980 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.099 0.901 40 H 0.103 0.897 41 H 0.089 0.911 42 H 0.109 0.891 43 H 0.238 0.762 44 H 0.107 0.893 45 H 0.113 0.887 46 H 0.109 0.891 47 H 0.100 0.900 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.203 -24.406 -15.086 28.717 hybrid contribution -0.006 -0.277 0.755 0.804 sum 1.197 -24.682 -14.331 28.566 Atomic orbital electron populations 1.20850 0.82672 0.95590 0.99449 1.43893 1.01791 1.00635 1.86006 1.19177 0.98460 0.85629 1.35226 0.91458 1.25024 0.98051 0.98552 0.98023 1.70079 1.20582 1.27139 1.37186 0.86227 0.78521 0.84519 0.77512 1.20331 1.21607 1.21796 1.20648 0.96454 0.88614 0.90815 1.23240 0.94250 0.95255 1.01310 0.89865 1.22675 1.00989 0.97677 0.95327 1.22092 0.85892 0.96581 0.97903 1.48602 1.24623 1.42919 1.19317 1.19682 0.84377 0.83607 0.81200 1.90774 1.23274 1.49217 1.75978 1.22237 0.93882 0.99164 0.87602 1.88105 1.47801 1.62086 1.29281 1.20490 0.93878 0.93832 0.84680 1.24250 0.91654 0.94095 0.99274 1.74283 1.15780 1.19136 1.02013 1.74307 1.02017 1.13174 1.24059 1.26521 1.01775 0.98577 0.86311 1.46188 1.20014 1.30270 1.19528 1.22180 1.02486 0.89868 0.92677 1.22378 0.97686 0.92332 0.87504 0.95090 0.94276 0.98047 0.93814 0.94378 0.92829 0.90137 0.90611 0.91757 0.91602 0.90149 0.89716 0.91096 0.89054 0.76190 0.89298 0.88684 0.89088 0.90011 0.91651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.92 8.61 59.85 0.52 4.44 16 2 N -0.60 -14.68 2.84 -181.12 -0.51 -15.20 16 3 C -0.26 -6.92 9.64 -15.06 -0.15 -7.07 16 4 H 0.07 1.78 7.87 -52.49 -0.41 1.36 16 5 C 0.00 0.06 5.07 -17.43 -0.09 -0.03 16 6 N -0.91 -26.66 10.81 55.49 0.60 -26.06 16 7 Si 0.90 22.09 29.58 -169.99 -5.03 17.06 16 8 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 9 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 10 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 11 C 0.16 3.07 5.17 -4.05 -0.02 3.05 16 12 C -0.12 -1.86 3.29 -88.48 -0.29 -2.15 16 13 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 14 C -0.13 -1.37 6.42 -24.89 -0.16 -1.53 16 15 C 0.10 0.94 6.49 -3.06 -0.02 0.92 16 16 N -0.62 -8.56 3.33 -170.52 -0.57 -9.13 16 17 C 0.52 7.88 7.93 -10.99 -0.09 7.79 16 18 O -0.52 -10.56 16.76 -14.35 -0.24 -10.80 16 19 C 0.05 0.50 5.61 36.00 0.20 0.70 16 20 O -0.36 -4.33 9.86 -55.14 -0.54 -4.87 16 21 C 0.15 1.23 6.29 36.01 0.23 1.46 16 22 C 0.17 1.91 7.66 -154.99 -1.19 0.72 16 23 N -0.27 -3.88 12.21 32.80 0.40 -3.48 16 24 N -0.30 -3.94 12.21 29.69 0.36 -3.58 16 25 C 0.16 1.34 12.74 -89.95 -1.15 0.19 16 26 N -0.47 -3.76 3.15 -122.69 -0.39 -4.14 16 27 C 0.07 0.22 11.05 59.85 0.66 0.89 16 28 C 0.12 2.04 4.95 -2.53 -0.01 2.02 16 29 H 0.03 0.83 7.32 -51.93 -0.38 0.45 16 30 H 0.04 1.05 7.40 -51.93 -0.38 0.67 16 31 H 0.00 0.02 6.19 -51.93 -0.32 -0.30 16 32 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 33 H 0.04 0.67 8.03 -51.93 -0.42 0.26 16 34 H 0.05 1.00 8.04 -51.93 -0.42 0.59 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.75 8.04 -51.93 -0.42 0.33 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.30 7.21 -51.93 -0.37 -0.07 16 42 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.22 0.79 8.06 -52.48 -0.42 0.37 16 44 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 45 H 0.09 0.04 8.14 -51.93 -0.42 -0.38 16 46 H 0.09 0.15 7.19 -51.93 -0.37 -0.22 16 47 H 0.08 1.66 8.04 -51.93 -0.42 1.24 16 48 H 0.07 1.10 7.20 -51.93 -0.37 0.73 16 LS Contribution 395.17 15.07 5.96 5.96 Total: -1.00 -39.68 395.17 -9.17 -48.84 By element: Atomic # 1 Polarization: 1.65 SS G_CDS: -7.65 Total: -6.00 kcal Atomic # 6 Polarization: 12.95 SS G_CDS: -1.55 Total: 11.39 kcal Atomic # 7 Polarization: -61.48 SS G_CDS: -0.10 Total: -61.58 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -0.78 Total: -15.67 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.03 Total: 17.06 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -39.68 -9.17 -48.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753360207.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.711 kcal (2) G-P(sol) polarization free energy of solvation -39.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds