Wall clock time and date at job start Tue Mar 31 2020 21:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36939 * 120.00051 * 2 1 4 4 H 1.08000 * 120.00424 * 203.32072 * 3 2 1 5 5 C 1.38810 * 119.99861 * 23.31803 * 3 2 1 6 6 N 1.31623 * 120.00112 * 14.43038 * 5 3 2 7 7 Si 1.86794 * 120.00095 * 194.42964 * 5 3 2 8 8 H 1.48500 * 109.47078 * 359.97438 * 7 5 3 9 9 H 1.48498 * 109.47439 * 120.00089 * 7 5 3 10 10 H 1.48502 * 109.47015 * 240.00012 * 7 5 3 11 11 C 1.46500 * 120.00237 * 180.02562 * 2 1 3 12 12 C 1.52993 * 109.47379 * 89.99386 * 11 2 1 13 13 H 1.09003 * 110.88736 * 57.43347 * 12 11 2 14 14 C 1.55158 * 111.00771 * 181.34930 * 12 11 2 15 15 C 1.54333 * 103.02368 * 153.38230 * 14 12 11 16 16 N 1.47025 * 107.26393 * 338.14381 * 15 14 12 17 17 C 1.34772 * 125.64715 * 178.84293 * 16 15 14 18 18 O 1.21280 * 120.00043 * 179.69234 * 17 16 15 19 19 C 1.50698 * 120.00004 * 359.69881 * 17 16 15 20 20 O 1.42905 * 109.47114 * 179.97438 * 19 17 16 21 21 C 1.42906 * 113.99849 * 180.02562 * 20 19 17 22 22 C 1.50701 * 109.46849 * 180.02562 * 21 20 19 23 23 N 1.30513 * 126.35315 * 90.02187 * 22 21 20 24 24 N 1.28591 * 109.67691 * 179.73265 * 23 22 21 25 25 C 1.30519 * 109.67125 * 359.97438 * 24 23 22 26 26 N 1.35488 * 107.30786 * 0.02562 * 25 24 23 27 27 C 1.46507 * 126.98074 * 180.02562 * 26 25 24 28 28 C 1.47421 * 108.70223 * 358.58748 * 16 15 14 29 29 H 1.09000 * 109.46832 * 275.18285 * 1 2 3 30 30 H 1.09001 * 109.47177 * 35.18429 * 1 2 3 31 31 H 1.09003 * 109.46836 * 155.18282 * 1 2 3 32 32 H 0.96997 * 120.00062 * 180.02562 * 6 5 3 33 33 H 1.09005 * 109.46791 * 329.99782 * 11 2 1 34 34 H 1.09004 * 109.47429 * 210.00170 * 11 2 1 35 35 H 1.08997 * 110.72404 * 271.94629 * 14 12 11 36 36 H 1.09005 * 110.71409 * 35.04052 * 14 12 11 37 37 H 1.08998 * 109.99279 * 218.67153 * 15 14 12 38 38 H 1.09004 * 109.77537 * 97.49823 * 15 14 12 39 39 H 1.09001 * 109.47543 * 59.99538 * 19 17 16 40 40 H 1.09005 * 109.47550 * 299.99364 * 19 17 16 41 41 H 1.08992 * 109.47692 * 59.99494 * 21 20 19 42 42 H 1.09002 * 109.46463 * 299.99423 * 21 20 19 43 43 H 1.08003 * 126.34574 * 179.97438 * 25 24 23 44 44 H 1.08999 * 109.46582 * 269.97293 * 27 26 25 45 45 H 1.09000 * 109.47000 * 29.97244 * 27 26 25 46 46 H 1.08998 * 109.47172 * 149.97534 * 27 26 25 47 47 H 1.09001 * 110.37090 * 143.19750 * 28 16 15 48 48 H 1.09000 * 110.36147 * 265.40332 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1635 1.2242 -0.3703 5 6 1.5407 2.3389 0.4759 6 7 0.4323 2.2549 1.1808 7 14 2.2940 4.0099 0.1158 8 1 3.5293 3.8328 -0.6891 9 1 1.3225 4.8378 -0.6431 10 1 2.6295 4.6874 1.3940 11 6 2.1975 -1.2687 -0.0006 12 6 2.4524 -1.7098 -1.4432 13 1 3.0020 -0.9451 -1.9921 14 6 3.1983 -3.0697 -1.4854 15 6 2.7665 -3.6611 -2.8440 16 7 1.5089 -3.0026 -3.2266 17 6 0.8187 -3.2269 -4.3623 18 8 -0.2146 -2.6277 -4.5724 19 6 1.3309 -4.2223 -5.3712 20 8 0.4315 -4.2825 -6.4800 21 6 0.8265 -5.2026 -7.4996 22 6 -0.1881 -5.1837 -8.6138 23 7 -0.1680 -4.4109 -9.6653 24 7 -1.1842 -4.6672 -10.4104 25 6 -1.8985 -5.6156 -9.8683 26 7 -1.2869 -5.9703 -8.7126 27 6 -1.7243 -6.9967 -7.7629 28 6 1.1246 -2.0610 -2.1594 29 1 -0.3633 0.0928 1.0235 30 1 -0.3633 0.8399 -0.5921 31 1 -0.3633 -0.9328 -0.4314 32 1 0.0065 3.0606 1.5130 33 1 1.6084 -2.0286 0.5130 34 1 3.1500 -1.1386 0.5134 35 1 4.2773 -2.9190 -1.4532 36 1 2.8754 -3.7122 -0.6662 37 1 2.6086 -4.7355 -2.7495 38 1 3.5325 -3.4613 -3.5934 39 1 1.4016 -5.2062 -4.9074 40 1 2.3166 -3.9129 -5.7189 41 1 0.8868 -6.2065 -7.0796 42 1 1.8016 -4.9136 -7.8917 43 1 -2.8089 -6.0386 -10.2667 44 1 -2.3828 -6.5470 -7.0199 45 1 -2.2609 -7.7808 -8.2971 46 1 -0.8545 -7.4257 -7.2655 47 1 0.6759 -1.1647 -2.5877 48 1 0.4316 -2.5366 -1.4654 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753360207.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:15 Heat of formation + Delta-G solvation = 13.744270 kcal Electronic energy + Delta-G solvation = -28869.996001 eV Core-core repulsion = 24769.119535 eV Total energy + Delta-G solvation = -4100.876465 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -44.15885 -41.17619 -39.35665 -38.39140 -37.08353 -36.03408 -34.01986 -32.78882 -32.32700 -30.21170 -29.53117 -28.56779 -28.11040 -27.47831 -26.48172 -24.22853 -23.42938 -22.81814 -22.05273 -21.20867 -20.44341 -18.68938 -18.57842 -18.09281 -17.90527 -17.55265 -17.12085 -16.88302 -16.65478 -16.44480 -16.01329 -15.65039 -15.42224 -15.26139 -14.87061 -14.54137 -14.32114 -14.31400 -13.96954 -13.83616 -13.55253 -13.32100 -13.19653 -13.00325 -12.94337 -12.85354 -12.60413 -12.59259 -12.38569 -12.16762 -12.01260 -11.78104 -11.60637 -11.46469 -11.41064 -11.16876 -10.95473 -10.86650 -10.63440 -10.46220 -9.67374 -8.76172 -7.82642 -5.31566 0.60241 1.42976 1.45986 1.48636 1.53264 1.55002 1.65068 1.88459 2.49836 2.82198 3.28929 3.32966 3.52315 3.65089 3.71080 3.79530 3.84060 3.91868 3.94480 4.08328 4.13005 4.19570 4.26234 4.38227 4.39266 4.54743 4.57283 4.67595 4.68717 4.72451 4.79489 4.86485 4.92875 4.94429 5.03516 5.07684 5.09855 5.20539 5.31347 5.38881 5.52835 5.63291 5.67581 5.83199 5.92084 6.33570 6.52773 7.10988 7.14833 7.63110 7.88288 8.32190 9.20287 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017564 B = 0.002035 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.764893 B =13755.924087 C =14412.370594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.619 5.619 3 C -0.254 4.254 4 H 0.074 0.926 5 C -0.059 4.059 6 N -0.940 5.940 7 Si 0.964 3.036 8 H -0.264 1.264 9 H -0.298 1.298 10 H -0.290 1.290 11 C 0.160 3.840 12 C -0.110 4.110 13 H 0.061 0.939 14 C -0.116 4.116 15 C 0.095 3.905 16 N -0.617 5.617 17 C 0.512 3.488 18 O -0.590 6.590 19 C 0.061 3.939 20 O -0.399 6.399 21 C 0.150 3.850 22 C 0.164 3.836 23 N -0.328 5.328 24 N -0.353 5.353 25 C 0.167 3.833 26 N -0.466 5.466 27 C 0.062 3.938 28 C 0.125 3.875 29 H 0.006 0.994 30 H 0.002 0.998 31 H 0.028 0.972 32 H 0.246 0.754 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.104 0.896 36 H 0.091 0.909 37 H 0.107 0.893 38 H 0.092 0.908 39 H 0.131 0.869 40 H 0.114 0.886 41 H 0.119 0.881 42 H 0.101 0.899 43 H 0.265 0.735 44 H 0.083 0.917 45 H 0.126 0.874 46 H 0.112 0.888 47 H 0.030 0.970 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.999 -30.158 -14.265 33.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.342 5.342 3 C -0.385 4.385 4 H 0.091 0.909 5 C -0.254 4.254 6 N -0.587 5.587 7 Si 0.792 3.208 8 H -0.188 1.188 9 H -0.226 1.226 10 H -0.216 1.216 11 C 0.034 3.966 12 C -0.132 4.132 13 H 0.079 0.921 14 C -0.154 4.154 15 C -0.026 4.026 16 N -0.351 5.351 17 C 0.302 3.698 18 O -0.470 6.470 19 C -0.017 4.017 20 O -0.317 6.317 21 C 0.072 3.928 22 C -0.105 4.105 23 N -0.170 5.170 24 N -0.192 5.192 25 C -0.121 4.121 26 N -0.156 5.156 27 C -0.079 4.079 28 C 0.003 3.997 29 H 0.024 0.976 30 H 0.021 0.979 31 H 0.047 0.953 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.122 0.878 36 H 0.110 0.890 37 H 0.125 0.875 38 H 0.110 0.890 39 H 0.149 0.851 40 H 0.132 0.868 41 H 0.137 0.863 42 H 0.119 0.881 43 H 0.281 0.719 44 H 0.102 0.898 45 H 0.145 0.855 46 H 0.130 0.870 47 H 0.048 0.952 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.611 -28.624 -15.329 32.670 hybrid contribution -0.762 0.895 0.844 1.447 sum 2.850 -27.729 -14.485 31.414 Atomic orbital electron populations 1.20509 0.83497 0.95385 0.97322 1.44143 1.01727 1.02136 1.86161 1.19532 0.98602 0.86814 1.33535 0.90856 1.25799 0.98921 1.01941 0.98732 1.70234 1.22163 1.27430 1.38907 0.85248 0.77926 0.80384 0.77196 1.18812 1.22581 1.21649 1.20886 0.96128 0.86492 0.93131 1.22904 0.94287 0.97876 0.98155 0.92095 1.22690 1.01720 0.94066 0.96917 1.22465 0.84166 0.98408 0.97582 1.48685 1.25913 1.42133 1.18418 1.20839 0.83445 0.83689 0.81853 1.90739 1.26621 1.52161 1.77522 1.22334 0.93774 0.99619 0.86017 1.88040 1.49268 1.63785 1.30571 1.20806 0.93189 0.95454 0.83374 1.24800 0.92842 0.93749 0.99137 1.74139 1.17351 1.21519 1.04011 1.74160 1.03238 1.15893 1.25949 1.27339 1.01945 0.96846 0.85977 1.46483 1.18947 1.30393 1.19769 1.22579 1.03688 0.89330 0.92274 1.22068 0.98008 0.91305 0.88347 0.97594 0.97885 0.95321 0.94462 0.92829 0.92322 0.87792 0.89005 0.87468 0.89005 0.85146 0.86829 0.86339 0.88090 0.71931 0.89803 0.85520 0.86972 0.95151 0.92090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.19 8.61 127.77 1.10 10.29 16 2 N -0.62 -30.83 2.84 -726.94 -2.06 -32.89 16 3 C -0.25 -14.01 9.64 84.03 0.81 -13.20 16 4 H 0.07 3.87 7.87 -2.91 -0.02 3.85 16 5 C -0.06 -3.41 5.07 84.86 0.43 -2.98 16 6 N -0.94 -57.53 10.81 21.65 0.23 -57.29 16 7 Si 0.96 46.47 29.58 68.60 2.03 48.49 16 8 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 9 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 10 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 11 C 0.16 5.87 5.17 86.38 0.45 6.32 16 12 C -0.11 -3.31 3.29 -9.41 -0.03 -3.34 16 13 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 14 C -0.12 -1.96 6.42 31.79 0.20 -1.75 16 15 C 0.09 1.30 6.49 86.73 0.56 1.87 16 16 N -0.62 -15.79 3.33 -811.79 -2.70 -18.49 16 17 C 0.51 14.77 7.93 87.66 0.69 15.46 16 18 O -0.59 -25.06 16.76 16.01 0.27 -24.79 16 19 C 0.06 0.96 5.61 71.24 0.40 1.36 16 20 O -0.40 -8.91 9.86 -129.94 -1.28 -10.19 16 21 C 0.15 2.03 6.29 71.24 0.45 2.47 16 22 C 0.16 3.42 7.66 137.98 1.06 4.48 16 23 N -0.33 -9.70 12.21 -50.16 -0.61 -10.31 16 24 N -0.35 -9.65 12.21 -59.99 -0.73 -10.39 16 25 C 0.17 2.70 12.74 180.11 2.30 4.99 16 26 N -0.47 -6.57 3.15 -542.06 -1.71 -8.28 16 27 C 0.06 0.18 11.05 127.77 1.41 1.59 16 28 C 0.13 4.20 4.95 86.85 0.43 4.63 16 29 H 0.01 0.33 7.32 -2.39 -0.02 0.31 16 30 H 0.00 0.13 7.40 -2.39 -0.02 0.12 16 31 H 0.03 1.28 6.19 -2.39 -0.01 1.26 16 32 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 33 H 0.05 1.81 8.03 -2.38 -0.02 1.79 16 34 H 0.06 2.10 8.04 -2.39 -0.02 2.08 16 35 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.09 1.33 8.04 -2.38 -0.02 1.31 16 37 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 39 H 0.13 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.11 1.14 8.14 -2.38 -0.02 1.12 16 41 H 0.12 0.40 7.21 -2.39 -0.02 0.38 16 42 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.27 1.25 8.06 -2.91 -0.02 1.22 16 44 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 45 H 0.13 -0.43 8.14 -2.39 -0.02 -0.45 16 46 H 0.11 -0.14 7.19 -2.39 -0.02 -0.15 16 47 H 0.03 1.31 8.04 -2.39 -0.02 1.29 16 48 H 0.06 2.06 7.20 -2.39 -0.02 2.04 16 Total: -1.00 -97.70 395.17 4.65 -93.06 By element: Atomic # 1 Polarization: -2.06 SS G_CDS: 0.95 Total: -1.11 kcal Atomic # 6 Polarization: 21.93 SS G_CDS: 10.26 Total: 32.19 kcal Atomic # 7 Polarization: -130.07 SS G_CDS: -7.58 Total: -137.65 kcal Atomic # 8 Polarization: -33.97 SS G_CDS: -1.01 Total: -34.98 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.49 kcal Total: -97.70 4.65 -93.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753360207.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.804 kcal (2) G-P(sol) polarization free energy of solvation -97.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds